Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0019
(688 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 164 4e-41
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 164 6e-41
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 163 1e-40
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 163 1e-40
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 163 1e-40
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 163 1e-40
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 2.9
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 3.8
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 5.0
At3g01450.1 68416.m00069 expressed protein 28 5.0
At3g63100.1 68416.m07087 glycine-rich protein 28 6.7
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 28 6.7
At2g18900.1 68415.m02205 transducin family protein / WD-40 repea... 28 6.7
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R... 27 8.8
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 164 bits (399), Expect = 4e-41
Identities = 72/85 (84%), Positives = 81/85 (95%)
Frame = +2
Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
+D +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRG
Sbjct: 79 IDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRG 138
Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
AIILAKLSV+P+RRGYWGNKIGKPH
Sbjct: 139 AIILAKLSVVPIRRGYWGNKIGKPH 163
Score = 103 bits (247), Expect = 1e-22
Identities = 46/63 (73%), Positives = 54/63 (85%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 678
K VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 220
Query: 679 FAK 687
F K
Sbjct: 221 FVK 223
Score = 64.9 bits (151), Expect = 5e-11
Identities = 26/39 (66%), Positives = 36/39 (92%)
Frame = +3
Query: 141 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++I+
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQII 79
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 164 bits (398), Expect = 6e-41
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +2
Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
+D +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRG
Sbjct: 88 IDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG 147
Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
AIILAKLSV+PVRRGYWGNKIGKPH
Sbjct: 148 AIILAKLSVVPVRRGYWGNKIGKPH 172
Score = 103 bits (247), Expect = 1e-22
Identities = 46/63 (73%), Positives = 54/63 (85%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 678
K VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 229
Query: 679 FAK 687
F K
Sbjct: 230 FVK 232
Score = 57.2 bits (132), Expect = 1e-08
Identities = 23/39 (58%), Positives = 33/39 (84%)
Frame = +3
Query: 141 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
++++WVPVTKLGRLV G I ++E IYL SLP+KE++I+
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQII 88
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 163 bits (396), Expect = 1e-40
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +2
Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
+D +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRG
Sbjct: 87 IDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG 146
Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
AIILAKLSV+PVRRGYWGNKIGKPH
Sbjct: 147 AIILAKLSVVPVRRGYWGNKIGKPH 171
Score = 103 bits (247), Expect = 1e-22
Identities = 46/63 (73%), Positives = 54/63 (85%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 678
K VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 679 FAK 687
F K
Sbjct: 229 FVK 231
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +3
Query: 141 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++I+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQII 87
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 163 bits (396), Expect = 1e-40
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +2
Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
+D +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRG
Sbjct: 87 IDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG 146
Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
AIILAKLSV+PVRRGYWGNKIGKPH
Sbjct: 147 AIILAKLSVVPVRRGYWGNKIGKPH 171
Score = 103 bits (247), Expect = 1e-22
Identities = 46/63 (73%), Positives = 54/63 (85%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 678
K VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 679 FAK 687
F K
Sbjct: 229 FVK 231
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +3
Query: 141 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++I+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQII 87
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 163 bits (396), Expect = 1e-40
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +2
Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
+D +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRG
Sbjct: 87 IDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG 146
Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
AIILAKLSV+PVRRGYWGNKIGKPH
Sbjct: 147 AIILAKLSVVPVRRGYWGNKIGKPH 171
Score = 103 bits (247), Expect = 1e-22
Identities = 46/63 (73%), Positives = 54/63 (85%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 678
K VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 679 FAK 687
F K
Sbjct: 229 FVK 231
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +3
Query: 141 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++I+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQII 87
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 163 bits (396), Expect = 1e-40
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +2
Query: 254 LDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 433
+D +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRG
Sbjct: 87 IDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG 146
Query: 434 AIILAKLSVLPVRRGYWGNKIGKPH 508
AIILAKLSV+PVRRGYWGNKIGKPH
Sbjct: 147 AIILAKLSVVPVRRGYWGNKIGKPH 171
Score = 103 bits (247), Expect = 1e-22
Identities = 46/63 (73%), Positives = 54/63 (85%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 678
K VPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 679 FAK 687
F K
Sbjct: 229 FVK 231
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/39 (64%), Positives = 33/39 (84%)
Frame = +3
Query: 141 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIL 257
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++I+
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQII 87
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +2
Query: 284 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 463
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 464 PV 469
V
Sbjct: 209 QV 210
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +1
Query: 499 KATPVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 678
K + P + G G+ V L PA GTG+++ + +L+MAGV++ GS L N
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNN 273
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 126 HDHGRDHDRVHEDRHGLYLH 67
HDH DHD H D H + H
Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 492 LLPQ*PLRTGRTDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 313
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 312 CTGMILRTSSFR 277
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 350 AFVAIGDNNGHIGLGVKCSKE 412
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 28.3 bits (60), Expect = 5.0
Identities = 28/100 (28%), Positives = 40/100 (40%)
Frame = -2
Query: 612 KLLRNWRRHNTSTTRCRNQPDCYGTTLAGDLARDGCGFPILLPQ*PLRTGRTDSLARIIA 433
K L+N R S T C D + + D D +LL Q L++ + A
Sbjct: 131 KSLKN-PRSAVSKTACMTSADIFSSY--NDHTIDQ--LDLLLTQLLLKSSQDKRFVCEAA 185
Query: 432 PRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 313
+ VA + H +P + P L P N R+R A CF
Sbjct: 186 EKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKASTCF 224
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -2
Query: 120 HGRDH----DRVHEDRHGLYLHRVIRIRRENRHVH 28
HGRDH DR H HG + HR R R H H
Sbjct: 109 HGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGH 143
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 126 HDHGRDHDRVHEDRHG-LYLHRVIRIRRENRHVHRL 22
HDHG HD H HG Y R ++ +++ + +
Sbjct: 158 HDHGHGHDHGHSHDHGHSYGERAEQLLEKSKEIRNI 193
>At2g18900.1 68415.m02205 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to LACK protective antigen (GI:13625467)
[Leishmania donovani]
Length = 804
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 555 ADSCTSWYWYCVCASS*EASSDG 623
A+SCT+W+W+ + SSDG
Sbjct: 273 AESCTTWHWHSAEVNVLNFSSDG 295
>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
helicase SDE3 [Arabidopsis thaliana] GI:13811296
Length = 1002
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = -3
Query: 674 PKVPVEPRADV*QSCTPAI*RSFLGTGADTIPVPRGAGISRTVTEPHLPVTLQGTGVAFL 495
P VP+ P + Q C+ + G I P G G + T+ E + + L
Sbjct: 389 PFVPISPALNAEQICSIEMVLGCKGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNARVL 448
Query: 494 SCYPSN 477
C PSN
Sbjct: 449 VCAPSN 454
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,208,811
Number of Sequences: 28952
Number of extensions: 343814
Number of successful extensions: 958
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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