Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0044
         (475 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39770.1 68417.m05632 trehalose-6-phosphate phosphatase, puta...    27   4.9  
At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR...    27   4.9  
At4g31570.1 68417.m04483 expressed protein                             27   6.5  
At3g19870.1 68416.m02516 expressed protein                             27   6.5  
At3g01580.1 68416.m00088 pentatricopeptide (PPR) repeat-containi...    27   8.6  

>At4g39770.1 68417.m05632 trehalose-6-phosphate phosphatase,
           putative similar to trehalose-6-phosphate phosphatase
           (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains
           Pfam profile PF02358: Trehalose-phosphatase
          Length = 349

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -1

Query: 364 NDWNCYQKQIHNIGLQDIPKITVTEIRKVL 275
           N+W+    Q+ ++ ++D PK+ +T+ RKVL
Sbjct: 227 NNWSDLANQVRSV-MKDYPKLRLTQGRKVL 255


>At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1607

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 316 DIPKITVTEIRKVLRQKGF 260
           D+PK  ++ IRK LR+KGF
Sbjct: 60  DVPKSFLSRIRKELRRKGF 78


>At4g31570.1 68417.m04483 expressed protein
          Length = 2712

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 115  ILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWENV 8
            +LE + K     + ++  IDKLQ+D +S  N+ E +
Sbjct: 1205 LLEAVRKILSERLELQSVIDKLQSDLSSKSNDMEEM 1240


>At3g19870.1 68416.m02516 expressed protein 
          Length = 1117

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 93  FLTILSNIVQSPCKLHFGHKK*PVVLLI*TLLSSQFCSVEHIEHFVVIDVNPSCTAKP 266
           F+ +L  IVQSP     G K+  +V     L+S    SV H+E   V+D+  +   +P
Sbjct: 89  FIDVLRTIVQSPTDGSSGLKEQAMVSFTSVLVSIDSFSVGHVE--AVVDLLLALVNRP 144


>At3g01580.1 68416.m00088 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 641

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 139 CNLHGDWTILERIVKKA-KVEVSIKDYIDKLQNDTASFKNEWENVIK 2
           C +H +  + E + KK  ++E +   Y   L ++    K EWENV K
Sbjct: 527 CRIHQNGEMAETVAKKLFELESNHAGYY-MLMSNVYGVKGEWENVEK 572


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,232,123
Number of Sequences: 28952
Number of extensions: 165467
Number of successful extensions: 455
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)