Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0026
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31990.1 68414.m03934 expressed protein                             31   0.95 
At5g36740.1 68418.m04402 PHD finger family protein                     27   8.8  
At5g36670.1 68418.m04388 PHD finger family protein                     27   8.8  
At5g35560.1 68418.m04231 DENN (AEX-3) domain-containing protein ...    27   8.8  
At1g80130.1 68414.m09379 expressed protein                             27   8.8  
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t...    27   8.8  

>At1g31990.1 68414.m03934 expressed protein
          Length = 325

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 479 EGQISRRHPRQRDDIPSPYKNGTRPRRVYSRTTLSNAL 592
           +  + + HP + D +P  Y+N  +  R+ + TTLS+ +
Sbjct: 48  QSHVGKAHPLKMDQMPRRYRNRRKTLRLATNTTLSSII 85


>At5g36740.1 68418.m04402 PHD finger family protein
          Length = 1179

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 281 ESPMKQRHLPTRVVDSRVIGEER 213
           ESP++ RH    + D R+IGE+R
Sbjct: 352 ESPLESRHNNPLIDDERMIGEQR 374


>At5g36670.1 68418.m04388 PHD finger family protein
          Length = 1193

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 281 ESPMKQRHLPTRVVDSRVIGEER 213
           ESP++ RH    + D R+IGE+R
Sbjct: 352 ESPLESRHNNPLIDDERMIGEQR 374


>At5g35560.1 68418.m04231 DENN (AEX-3) domain-containing protein
           contains Pfam domain PF02141: DENN (AEX-3) domain; this
           cDNA may contain an anomalously spliced intron...will
           require further examination.
          Length = 765

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 303 PGWLLRSGVADEAATSSYTSSR*PCHRRRALDGSPET 193
           PG LLR    DE + SS +    PC RR +   + +T
Sbjct: 395 PGPLLRCPYLDEISDSSTSFQAAPCERRHSRTSADDT 431


>At1g80130.1 68414.m09379 expressed protein
          Length = 305

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
 Frame = -2

Query: 370 LLKSTAALFVGLMSIRHF-RNHCPRVATAIWSRR*SSDIFLHE**IAVSSAKSARWVSGD 194
           LL+ST+A  +     +H  R   P   + +W R  S  +F  +     +  +  + +S +
Sbjct: 2   LLRSTSAPILNSWLPQHCSRESSPEPESQLWRRSTSLSLFSSKSIDGHTGEQLHQALSDN 61

Query: 193 RGISLIYKLNNNGESAEPCGTPAVS*RGRERVPSTRYRNERFDKKS 56
           + I +I K  +N  S +   TP  S + R  +  TRY  +  D+ S
Sbjct: 62  KEI-IILKSKSNEHSYK---TPTSSRQRRSSLDETRYTKKTLDRSS 103


>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein low similarity to
           glucoamylase S1/S2 [Precursor] from Saccharomyces
           cerevisiae [SP|P08640], proteophosphoglycan from
           Leishmania major [GI:5420387]; contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 256

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +2

Query: 71  PFVSISSRGNSFSSPSTDRRSPARLRALPVI 163
           P VS SS   S SSP T R SPA   + PV+
Sbjct: 170 PPVSHSSPPVSHSSPPTSRSSPAVSHSSPVV 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,952,467
Number of Sequences: 28952
Number of extensions: 368592
Number of successful extensions: 1021
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)