Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0024
         (455 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14690.1 68415.m01652 glycosyl hydrolase family 10 protein si...    28   2.6  
At5g19760.1 68418.m02349 dicarboxylate/tricarboxylate carrier (D...    27   4.5  
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea...    27   6.0  
At4g24330.1 68417.m03492 expressed protein hypothetical protein ...    27   7.9  

>At2g14690.1 68415.m01652 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 529

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 150 LNRLNGISRYKYIGRLILWDMM 85
           LNR+N + + +Y GRLI WD+M
Sbjct: 262 LNRMNSVMK-RYKGRLIGWDVM 282


>At5g19760.1 68418.m02349 dicarboxylate/tricarboxylate carrier (DTC)
           identical to dicarboxylate/tricarboxylate carrier
           [Arabidopsis thaliana] GI:19913113
          Length = 298

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
 Frame = +1

Query: 220 GVLSACTGTPLPLYLAR--SSNTFQF-QRSNRRYTIQLKLRSHVSRWVTALCWGKCG 381
           G + AC G+P  L L R  + NT    QR N         R      V AL W  CG
Sbjct: 116 GAIGACVGSPADLALIRMQADNTLPLAQRRNYTNAFHALTRISADEGVLAL-WKGCG 171


>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
          family protein HIRA protein, Drosophila melanogaster,
          PID:e1250847
          Length = 318

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 52 TLTRSWICKRGHHI 93
          +LTRSW CK GH +
Sbjct: 52 SLTRSWTCKLGHRL 65


>At4g24330.1 68417.m03492 expressed protein hypothetical protein -
           Caenorhabditis elegans,PID:e1350884
          Length = 478

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 223 VLSACTGTPLPLYLARSSNTFQFQRSNRRY 312
           +L    G   PL L  ++N F+F  S RRY
Sbjct: 199 LLGVGEGEDSPLLLKEATNVFKFYASGRRY 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,464,498
Number of Sequences: 28952
Number of extensions: 218777
Number of successful extensions: 424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)