Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0012
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28760.2 68415.m03498 NAD-dependent epimerase/dehydratase fam...    27   1.2  
At2g28760.1 68415.m03497 NAD-dependent epimerase/dehydratase fam...    27   1.2  
At3g56200.1 68416.m06246 amino acid transporter family protein l...    28   5.0  
At1g15510.1 68414.m01866 pentatricopeptide (PPR) repeat-containi...    27   8.7  

>At2g28760.2 68415.m03498 NAD-dependent epimerase/dehydratase family
           protein similar to UDP-glucuronic acid decarboxylase
           Uxs1p from Filobasidiella neoformans GI:14318327;
           contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family
          Length = 343

 Score = 27.1 bits (57), Expect(2) = 1.2
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 202 NPKKKIVYYTSNNENLRLNAAYLIGSYQVCSLLRMIYDRVIILSWIFTGVRSSIE 366
           +P +   ++ SN   L    A  IGS+ V  L++   + VI+    FTG + +++
Sbjct: 19  SPLRNSKFFQSNMRILVTGGAGFIGSHLVDKLMQNEKNEVIVADNYFTGSKDNLK 73



 Score = 21.8 bits (44), Expect(2) = 1.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 43 TLKTGYKPKPTRNSKYF 93
          T K    P P RNSK+F
Sbjct: 11 TTKPPPMPSPLRNSKFF 27


>At2g28760.1 68415.m03497 NAD-dependent epimerase/dehydratase family
           protein similar to UDP-glucuronic acid decarboxylase
           Uxs1p from Filobasidiella neoformans GI:14318327;
           contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family
          Length = 343

 Score = 27.1 bits (57), Expect(2) = 1.2
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 202 NPKKKIVYYTSNNENLRLNAAYLIGSYQVCSLLRMIYDRVIILSWIFTGVRSSIE 366
           +P +   ++ SN   L    A  IGS+ V  L++   + VI+    FTG + +++
Sbjct: 19  SPLRNSKFFQSNMRILVTGGAGFIGSHLVDKLMQNEKNEVIVADNYFTGSKDNLK 73



 Score = 21.8 bits (44), Expect(2) = 1.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 43 TLKTGYKPKPTRNSKYF 93
          T K    P P RNSK+F
Sbjct: 11 TTKPPPMPSPLRNSKFF 27


>At3g56200.1 68416.m06246 amino acid transporter family protein low
           similarity to N system amino acids transporter NAT-1
           [Mus musculus] GI:7406950; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 435

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -1

Query: 518 LNSGEINNKLQFPKRSEGGSLVKNKTIHAI*FV*INFHQNVHII 387
           L +G+  N   FP+ S GGS  +  T   +      FH NVH I
Sbjct: 201 LVNGQTKNPRLFPELSNGGSFWQLFTASPVIVTAFTFHFNVHPI 244


>At1g15510.1 68414.m01866 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 866

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +1

Query: 148 HLCHLYQFCKKLNEELD---RNPKKKIVYYTSNNENLRLN 258
           +L ++Y  CK +++ LD     P+K ++ +TS    LRLN
Sbjct: 438 NLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLN 477


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,411,812
Number of Sequences: 28952
Number of extensions: 230985
Number of successful extensions: 511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)