Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0029
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55130.1 68416.m06122 ABC transporter family protein breast c...    30   1.3  
At5g20690.1 68418.m02457 leucine-rich repeat transmembrane prote...    29   2.9  
At3g55100.1 68416.m06119 ABC transporter family protein ATP-bind...    28   5.1  
At3g55110.1 68416.m06120 ABC transporter family protein ATP-bind...    28   6.8  

>At3g55130.1 68416.m06122 ABC transporter family protein breast
           cancer resistance protein 1 BCRP1, Mus musculus,
           EMBL:NP_036050
          Length = 725

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/68 (23%), Positives = 29/68 (42%)
 Frame = +3

Query: 480 YDSFWDPTVASTTVGNVLRSFTNWIFLTSLYIQDLT*SVGIHINQKNIHILKTIFHSITF 659
           Y SFW  +   T +  V+ +      ++  Y+       G ++N+  I    T FH I+ 
Sbjct: 557 YASFWSGSSVVTFISGVVPNIMLCYMVSITYLAYCLLLSGFYVNRDRIPFYWTWFHYISI 616

Query: 660 HNYDYKKI 683
             Y Y+ +
Sbjct: 617 LKYPYEAV 624


>At5g20690.1 68418.m02457 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase PRK1,
           tomato, PIR:T07865
          Length = 659

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
 Frame = +2

Query: 122 IDEYNPAPSVFY--HPETSL-RDPTFWKMIEYYLNVMKYFRHFMDPFLMEEYTTEDF--- 283
           + EY P  S+ Y  H +  +      W      L +++   H M  FL EE+ + D    
Sbjct: 456 VSEYMPKSSLLYVLHGDRGIYHSELTWAT---RLKIIQGVAHGMK-FLHEEFASYDLPHG 511

Query: 284 NITGANFTKMETF----FEYYRIPLNKILSAETGYISRKWPMFARQRRINH 424
           N+  +N    ET+     +Y  +PL +  +A     + K P FA+ ++++H
Sbjct: 512 NLKSSNVLLSETYEPLISDYAFLPLLQPSNASQALFAFKTPEFAQTQQVSH 562


>At3g55100.1 68416.m06119 ABC transporter family protein ATP-binding
           cassette-sub-family G-member 2, Mus musculus,
           EMBL:AF140218
          Length = 662

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/68 (23%), Positives = 28/68 (41%)
 Frame = +3

Query: 480 YDSFWDPTVASTTVGNVLRSFTNWIFLTSLYIQDLT*SVGIHINQKNIHILKTIFHSITF 659
           + SFW      T V  V+ +      +T  Y+       G ++N+  IH+     H I+ 
Sbjct: 494 FASFWSGCSFVTFVSGVIPNVMMSYMVTFGYLSYCLLFSGFYVNRDRIHLYWIWIHYISL 553

Query: 660 HNYDYKKI 683
             Y Y+ +
Sbjct: 554 LKYPYEAV 561


>At3g55110.1 68416.m06120 ABC transporter family protein ATP-binding
           cassette-sub-family G-member 2, Mus musculus,
           EMBL:AF140218
          Length = 708

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/68 (22%), Positives = 29/68 (42%)
 Frame = +3

Query: 480 YDSFWDPTVASTTVGNVLRSFTNWIFLTSLYIQDLT*SVGIHINQKNIHILKTIFHSITF 659
           Y +FW  +   T +  ++ +      +T  Y+       G +IN+  I +    FH I+ 
Sbjct: 540 YAAFWSGSSIVTFISGLIPNVMMSYMVTIAYLSYCLLLGGFYINRDRIPLYWIWFHYISL 599

Query: 660 HNYDYKKI 683
             Y Y+ +
Sbjct: 600 LKYPYEAV 607


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,656,483
Number of Sequences: 28952
Number of extensions: 270023
Number of successful extensions: 672
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)