SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0023
         (585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13950.1 68414.m01639 eukaryotic translation initiation facto...   201   3e-52
At1g69410.1 68414.m07972 eukaryotic translation initiation facto...   194   4e-50
At1g26630.1 68414.m03243 eukaryotic translation initiation facto...   190   8e-49
At5g14230.1 68418.m01663 ankyrin repeat family protein contains ...    29   2.3  
At5g03140.1 68418.m00262 lectin protein kinase family protein co...    29   3.0  
At3g05830.1 68416.m00654 expressed protein                             29   3.0  
At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putat...    28   4.0  
At5g64280.1 68418.m08075 oxoglutarate/malate translocator, putat...    28   4.0  
At5g42765.1 68418.m05208 expressed protein                             28   4.0  
At3g51290.1 68416.m05614 proline-rich family protein                   28   4.0  
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea...    28   5.3  
At3g06490.1 68416.m00753 myb family transcription factor (MYB108...    28   5.3  
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-...    27   7.0  
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila...    27   7.0  
At2g28550.1 68415.m03468 AP2 domain-containing transcription fac...    27   7.0  
At1g56345.1 68414.m06477 pseudouridine synthase family protein l...    27   7.0  
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein...    27   7.0  
At1g35830.1 68414.m04452 VQ motif-containing protein contains PF...    27   7.0  
At3g58930.1 68416.m06567 F-box family protein contains F-box dom...    27   9.2  
At2g27680.1 68415.m03354 aldo/keto reductase family protein cont...    27   9.2  

>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
           5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Arabidopsis thaliana}
          Length = 158

 Score =  201 bits (490), Expect = 3e-52
 Identities = 87/150 (58%), Positives = 117/150 (78%), Gaps = 1/150 (0%)
 Frame = +3

Query: 51  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 230
           E+ HFE+ D+GAS T+P Q   +RKNG++++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4   EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 231 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD-LG 407
           IF  KK EDI PS+HN DVPHV R DYQL DIS+DGY++L+ DNG  ++DLK+P+ D L 
Sbjct: 64  IFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLL 123

Query: 408 TQLRTDFDSGKELLCTVLKSCGEECVIAVK 497
            Q+++ FD GK+L+ +V+ + GEE + A+K
Sbjct: 124 QQIKSGFDDGKDLVVSVMSAMGEEQINALK 153


>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similarity to
           eukaryotic initiation factor 5A (2) (Nicotiana
           plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Lycopersicon esculentum}
          Length = 158

 Score =  194 bits (473), Expect = 4e-50
 Identities = 85/150 (56%), Positives = 115/150 (76%), Gaps = 1/150 (0%)
 Frame = +3

Query: 51  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 230
           ++ HFE+ D+GAS T+P Q   +RK G +++KGRPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4   DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 231 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLG 407
           IF  KK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ DNG  ++DLK+P D  L 
Sbjct: 64  IFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALL 123

Query: 408 TQLRTDFDSGKELLCTVLKSCGEECVIAVK 497
           TQL+  F+ GK+++ +V+ + GEE + A+K
Sbjct: 124 TQLKNGFEEGKDIVVSVMSAMGEEQMCALK 153


>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similariy to
           SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
           (eIF-5A 1) {Lycopersicon esculentum}
          Length = 159

 Score =  190 bits (462), Expect = 8e-49
 Identities = 83/150 (55%), Positives = 111/150 (74%), Gaps = 1/150 (0%)
 Frame = +3

Query: 51  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 230
           ++ HFE  +SGAS T+P     +RK G +++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4   DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63

Query: 231 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLG 407
           IF  KK EDI PS+HN DVPHV R DYQL DI++DG+++L+ D+G  ++DLK+P D  L 
Sbjct: 64  IFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLT 123

Query: 408 TQLRTDFDSGKELLCTVLKSCGEECVIAVK 497
            Q+R  FD GK+++ +V+ S GEE + AVK
Sbjct: 124 AQMRLGFDEGKDIVVSVMSSMGEEQICAVK 153


>At5g14230.1 68418.m01663 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 591

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +3

Query: 381 LKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEEC 482
           L IPDGD  T L      G   +C  L SCG  C
Sbjct: 412 LDIPDGDGYTPLMLAAREGHGHMCEYLISCGANC 445


>At5g03140.1 68418.m00262 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain and PF00069:
           Protein kinase domain
          Length = 711

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 151 RPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSSMS 44
           +P  +T+P +R     +   A+ PE P++K  SSMS
Sbjct: 631 QPDPVTRPTMRSVVQILVGEADVPEVPIAKPSSSMS 666


>At3g05830.1 68416.m00654 expressed protein
          Length = 336

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 24/82 (29%), Positives = 39/82 (47%)
 Frame = +3

Query: 204 AKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDL 383
           AK  + G+D    K  ED+ P         V+ +D ++T + D+  + LM  +G  +   
Sbjct: 186 AKAGIGGMDSELQKLLEDVSPMKFERMNRLVEVKDEEITKLKDE--IRLM--SGQWKHKT 241

Query: 384 KIPDGDLGTQLRTDFDSGKELL 449
           K  +  L  Q RTD D  K++L
Sbjct: 242 KELESQLEKQRRTDQDLKKKVL 263


>At5g64290.1 68418.m08076 oxoglutarate/malate translocator, putative
           similar to SWISS-PROT:Q41364 2-oxoglutarate/malate
           translocator, chloroplast precursor. [Spinach]{Spinacia
           oleracea}
          Length = 563

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/71 (22%), Positives = 28/71 (39%)
 Frame = +1

Query: 79  PGPQPPSPCNVRPCVKMVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKSMKI 258
           P P  PSP       K++ L   +    +L+   P PE      +  L +  S +  + +
Sbjct: 80  PPPPSPSPSPSPQGAKLIPLILSISVGLILRFAVPVPEGVTPQGWQLLSIFLSTIAGLVL 139

Query: 259 SVPPHTTWTYL 291
           S  P   W ++
Sbjct: 140 SPLPVGAWAFI 150


>At5g64280.1 68418.m08075 oxoglutarate/malate translocator, putative
           similar to SWISS-PROT:Q41364 2-oxoglutarate/malate
           translocator, chloroplast precursor [Spinach]{Spinacia
           oleracea}
          Length = 549

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/75 (20%), Positives = 31/75 (41%)
 Frame = +1

Query: 67  RPETPGPQPPSPCNVRPCVKMVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMVK 246
           +P+ P P PP P       K++ L   V    +++   P+PE   +  +  L +    + 
Sbjct: 66  KPQPPPPSPPQPQG----AKLIPLAISVSIGLIVRFLIPRPEQVTSQGWQLLSIFLFTIS 121

Query: 247 SMKISVPPHTTWTYL 291
            + +   P   W ++
Sbjct: 122 GLVLGPLPVGAWAFI 136


>At5g42765.1 68418.m05208 expressed protein
          Length = 229

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -3

Query: 565 KKIKKFV-NPINAELVYLSRAVFALTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPSG 389
           KK  +F+  PI+A    L  A  +LT+ +  + +D   + N       S R+CVP+  S 
Sbjct: 81  KKSSRFLLAPIDATRQALQSAYLSLTSESDYTEKDLENLQNL---FKSSARDCVPKERSS 137

Query: 388 ILRSSRRS 365
           ++    +S
Sbjct: 138 LVDFQSKS 145


>At3g51290.1 68416.m05614 proline-rich family protein 
          Length = 602

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 28  KTQQWVTSKTHTLRPETPGPQPPSP 102
           +T  W T+ T ++ P  P P PP P
Sbjct: 91  ETTTWTTTTTSSVLPPPPPPPPPPP 115


>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           GTP-binding protein beta chain homolog, Nicotiana
           tabacum, PIR:T16970
          Length = 438

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 509 SCVCFDGDDALLTAGFQHGA 450
           +C+ F GDD+LL +G Q G+
Sbjct: 124 TCLVFSGDDSLLVSGSQDGS 143


>At3g06490.1 68416.m00753 myb family transcription factor (MYB108)
           identical to transcription factor MYB108 GI:15375290
           from [Arabidopsis thaliana]
          Length = 323

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 154 HARLLKCPHPKPESTATLKFTWLGLISSMVKSMKIS--VPPHTTWTYLT*SAKTTN 315
           HA+ LKC     +   T+K+ W+  +   ++S   S      TT T  T SA T++
Sbjct: 122 HAKQLKCDVNSQQFKDTMKYLWMPRLVERIQSASASSAAAATTTTTTTTGSAGTSS 177


>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
           RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1226

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 294 VKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDL-GTQLRTDFDSGKE 443
           V+R+  +++      Y  L ADN    +   +  G + GT+++T+FDS +E
Sbjct: 350 VRRDGSKMSLAQSKKYSQLNADNAQWEDRQLLRSGAVRGTEVQTEFDSEEE 400


>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar to
            SP|P35207 Antiviral protein SKI2 {Saccharomyces
            cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
            box helicase, PF00271: Helicase conserved C-terminal
            domain
          Length = 1347

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
 Frame = +3

Query: 324  ISDDGYLTLMADNG--DLREDLKIPDGDLGTQLR----TDFDSGKELLCTV 458
            +SD+  L + A  G  D+ +++   D DL  Q++     + +SG+EL+CTV
Sbjct: 1141 MSDEALLQMPAFQGRIDVLKNIGCIDDDLVVQIKGRVACEMNSGEELICTV 1191


>At2g28550.1 68415.m03468 AP2 domain-containing transcription factor
           RAP2.7 (RAP2.7) nearly identical to AP2 domain
           transcription factor RAP2.7 (GI:2281639) [Arabidopsis
           thaliana]
          Length = 449

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 52  KTHTLRPETPGPQPP 96
           +T  +RP+ PGPQPP
Sbjct: 402 QTSAVRPQPPGPQPP 416


>At1g56345.1 68414.m06477 pseudouridine synthase family protein low
           similarity to SP|P23851 Ribosomal large subunit
           pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 322

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = -2

Query: 461 QHGAQQFLAAVEVSTQLCAEVTIRDFEVLTQ-VTVVSHQGQVAIIRDISQLVVFALHVRY 285
           +HGA +  AA++V   L     +RD E   + V+V S + +   + D++ ++V A   R 
Sbjct: 176 KHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVNSVKNESCELEDVNHVIV-AEGER- 233

Query: 284 VHVVCGGTD 258
             + CGG D
Sbjct: 234 -ELSCGGDD 241


>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
           contains INTERPRO domain, IPR001878: Zn-finger CCHC type
          Length = 353

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
 Frame = +1

Query: 52  KTHTLRPETPGPQPPS---PCNVRPCVKMVSLC*RVVHARLLKCP 177
           KT T       P PP    PCN  PC  + S   +  + R   CP
Sbjct: 22  KTTTKPTAAAAPSPPDIHCPCNAGPCNTVTSKTEKNPNRRFYTCP 66


>At1g35830.1 68414.m04452 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 302

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 4   SFLTVVKFKTQQWVTSKTHTLRPETPGPQPPSP 102
           ++L  V       + ++TH L P+ P P PP P
Sbjct: 60  TYLNFVNNLISDDILNQTHLLPPQPPPPPPPPP 92


>At3g58930.1 68416.m06567 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 482

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
 Frame = -3

Query: 271 VEGQISSYFLPLK----ISIPTK*TL-AWPCFPVLDVDISTILH-----GRPFSITKPFL 122
           V G I S FLP K     S+ +K  L  W   P+LD+D S  LH          I + F+
Sbjct: 11  VRGHILS-FLPAKHIALTSVLSKSWLNLWKLIPILDIDDSEFLHPEEGKAERLEIRQSFV 69

Query: 121 RRAEHCMGKVAEAPESPVS-KCVSSMSP 41
              +  +    ++P    S KC++ + P
Sbjct: 70  DFVDRVLALQDDSPIDRFSLKCITGIHP 97


>At2g27680.1 68415.m03354 aldo/keto reductase family protein
           contains Pfam profile PF00248: oxidoreductase, aldo/keto
           reductase family
          Length = 384

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 252 EDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKI 389
           ++I  S   MDV  +    +   D ++DGYL  +    DL+E+ KI
Sbjct: 147 QNIDISRKRMDVAALDMLQFHWWDYANDGYLDALKHLTDLKEEGKI 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,156,285
Number of Sequences: 28952
Number of extensions: 297521
Number of successful extensions: 985
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -