Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0020
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19060.1 68415.m02226 GDSL-motif lipase/hydrolase family prot...    28   6.3  
At5g29020.1 68418.m03592 hypothetical protein                          28   8.3  
At3g28770.1 68416.m03591 expressed protein                             28   8.3  

>At2g19060.1 68415.m02226 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL6 GI:15054390, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 349

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 460 PPANLNKVAYNTNIGXNAPANNY 528
           PP  L K  Y  NIG N   NNY
Sbjct: 145 PPEKLKKCLYTINIGSNDYLNNY 167


>At5g29020.1 68418.m03592 hypothetical protein
          Length = 847

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +1

Query: 457 EPPAN--LNKVAYNTNIGXNAPANNY--DESGEDDGQYXPPQGEDDGLYRPEVXDRELLS 624
           +PP+N  +++   N+  G      +   DE  +DD    P + +DD    P++   ELL 
Sbjct: 74  QPPSNPSVSRTMNNSGGGGRRGGRSEEDDEETDDDDNNIPIEEDDDEEENPDLDYEELLD 133

Query: 625 GAHSLNIA 648
           G   LN+A
Sbjct: 134 GL--LNLA 139


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 31  KSTQITFPQTTAAPKVNKKQGLXELYNNEGQSTAGYNLXNDNRSFKVRNGFNVD 192
           +ST       T   + +KK+   E + N G+S  G NL N   + +   G N++
Sbjct: 399 ESTNDKMVNATTNDEDHKKENKEETHENNGESVKGENLENKAGNEESMKGENLE 452


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.133    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,116,817
Number of Sequences: 28952
Number of extensions: 214960
Number of successful extensions: 401
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)