Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0015
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03510.1 68415.m00311 band 7 family protein contains Pfam pro...   158   3e-39
At2g10975.1 68415.m01173 hypothetical protein                          31   0.73 
At1g13600.1 68414.m01595 bZIP transcription factor family protei...    29   3.9  
At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ...    27   9.0  

>At2g03510.1 68415.m00311 band 7 family protein contains Pfam
           profile PF01145: SPFH domain / Band 7 family
          Length = 356

 Score =  158 bits (384), Expect = 3e-39
 Identities = 81/200 (40%), Positives = 121/200 (60%), Gaps = 5/200 (2%)
 Frame = +2

Query: 113 DQSSILAI--VILAVGVTVHFS---LHKVEEGHVGVYYRGGALLPVTSQAGFHMMIPLLT 277
           D SSIL    V  A+   V F    +H+V EGHVG Y+RGGALL + ++ GFH+ +P +T
Sbjct: 22  DISSILIAFGVFAAIAALVMFPSSLVHQVPEGHVGAYWRGGALLNIITEPGFHLKLPFIT 81

Query: 278 SYKAIQTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKQDPQSVLXMVRNFTXEYDRTXIF 457
           +Y+ +Q TLQTD+V+++PCGT GGVLI FE+IEVVN+     V   + N+   YD T I+
Sbjct: 82  NYEPVQVTLQTDQVRDIPCGTKGGVLITFEKIEVVNRLRKDFVYDTLLNYGVNYDNTWIY 141

Query: 458 NKVHHELNQXCSAHTHARGIHXFV*SNXREFTDQXXKRILMKWLQGLRVEAVXVAKPXIX 637
           +K+HHE+NQ CS+H+  + ++  +     E      +    ++  G+ + +V V KP I 
Sbjct: 142 DKIHHEINQFCSSHS-LQQVYIDIFDQIDERMKDALQADCTRYAPGIEILSVRVTKPKIP 200

Query: 638 TXNXENXELMGXXQSKLLIA 697
                N E M   ++K+LIA
Sbjct: 201 ESVRRNFEQMEEERTKVLIA 220


>At2g10975.1 68415.m01173 hypothetical protein
          Length = 133

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 434 EYDRTXIFNKVHHELNQXCSAHTHARGIHXFV*SNXREFTDQXXKRILMK 583
           E DR      +H E NQ     THA+ +  F+    +E  D   K++L +
Sbjct: 76  ELDRLEKITMMHSETNQLIKEKTHAKKMKMFIELTEKENLDDKSKKLLQQ 125


>At1g13600.1 68414.m01595 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 196

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 214 PIINTNMSFFYFMKGKMNRDPYSQNHNGQN 125
           P   T+ S FY + G +N + YS + NGQ+
Sbjct: 35  PSSPTSCSSFYHLNGLINNNNYSSSSNGQD 64


>At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 437

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 151 RGHGSFFPS*SRRRTCWCLLSGWSFITSYKSSWFSHDDTTSNIIQSHSDNF 303
           RG      +  +R  CW +LS  S+      +W  +D+ T N   S  DN+
Sbjct: 307 RGEEEKVENEKKRPPCWNMLSSKSYSEEESGAW--NDEDTINRSSSKEDNW 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,061,917
Number of Sequences: 28952
Number of extensions: 251860
Number of successful extensions: 461
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)