Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0001
(400 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containi... 30 0.65
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)... 29 1.1
At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein (H... 29 1.5
At2g15630.1 68415.m01790 pentatricopeptide (PPR) repeat-containi... 29 1.5
At1g63230.1 68414.m07147 pentatricopeptide (PPR) repeat-containi... 28 2.0
At5g49580.1 68418.m06136 DNAJ heat shock N-terminal domain-conta... 27 3.5
At3g49060.1 68416.m05360 protein kinase family protein / U-box d... 27 6.1
At2g44430.1 68415.m05525 DNA-binding bromodomain-containing prot... 27 6.1
At5g47690.1 68418.m05887 expressed protein 26 8.0
At5g04750.1 68418.m00488 F1F0-ATPase inhibitor protein, putative... 26 8.0
At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transfera... 26 8.0
At3g14415.1 68416.m01824 (S)-2-hydroxy-acid oxidase, peroxisomal... 26 8.0
>At5g19020.1 68418.m02260 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 939
Score = 29.9 bits (64), Expect = 0.65
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +1
Query: 181 WRASLARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFI 360
W A ++ S + L F ++ Q PD IT+ + + + G EE + H ++
Sbjct: 659 WNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLEEGKRAHDYL 718
Query: 361 SRQFTPP 381
+ PP
Sbjct: 719 NFSTIPP 725
>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
family protein low similarity to Swift [Xenopus laevis]
GI:14164561; contains Pfam profiles PF00583:
acetyltransferase, GNAT family, PF00533: BRCA1 C
Terminus (BRCT) domain
Length = 991
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 102 SEEGRSVILHQFIPLDLALQKFILQTLEGELSQAGIFFDDQF 227
S R +L F+PL LA F+LQ G +FDD +
Sbjct: 580 SSYSRKFLLITFLPLSLACLAFLLQWRSGVNDSVTQWFDDNY 621
>At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein
(HSP22.0-ER) identical to endomembrane-localized small
heat shock protein GI:511795 from [Arabidopsis thaliana]
Length = 195
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 229 TKEKFEVILDVQQFTPDEITVKASNNTVV-VEGKHEEKQDEHG 354
T E E++LD+ DE+ ++ N V+ V G+ + ++++ G
Sbjct: 78 TAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKG 120
>At2g15630.1 68415.m01790 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 627
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 253 LDVQQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQFTPPVH 387
+D+ PD++T + EGK EE ++ G + R+ P H
Sbjct: 493 MDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDH 537
>At1g63230.1 68414.m07147 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 323
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 262 QQFTPDEITVKASNNTVVVEGKHEEKQDEHGFISRQ 369
+Q PD +T A N +V EGK E ++ +G + R+
Sbjct: 140 RQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRR 175
>At5g49580.1 68418.m06136 DNAJ heat shock N-terminal
domain-containing protein contains similarity to S-locus
protein 5 GI:6069485 from [Brassica rapa]; contains Pfam
profile PF00226 DnaJ domain
Length = 695
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 213 FDDQFDEREI*GYFRRSAIHSRRD-HGQGVEQHGCRRRQARGE 338
+DD+ E+ YFRR S++D G G G + GE
Sbjct: 471 YDDELKREELLNYFRRFQNSSQKDTRGHGFSGSGFGSSEGEGE 513
>At3g49060.1 68416.m05360 protein kinase family protein / U-box
domain-containing protein contains Pfam profile: PF00069
Eukaryotic protein kinase domain
Length = 805
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 219 DQFDER-EI*GYFRRSAIHSRRDHGQGVEQHGCRRRQARGETGRA 350
++FD E+ FR+ R DH V++ RR +GETG +
Sbjct: 396 EKFDTAMELLKSFRQKRDEIRIDHENAVKEVNALRRLVKGETGES 440
>At2g44430.1 68415.m05525 DNA-binding bromodomain-containing protein
contains Pfam domains, Pfam PF00439: Bromodomain and
PF00249: Myb-like DNA-binding domain
Length = 646
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 178 PWRASLARQESSSTINLTKEKFEVILDVQQFT-PDEITVKASNNTVVVEGKHEEKQDE 348
P +S ++++ + L++EK + V+ +++ +NNT +G++++KQ E
Sbjct: 462 PSSSSFSQKDDTKEETLSEEKDNIATGVRSSRRANKVAAVVANNTKTGKGRNKQKQTE 519
>At5g47690.1 68418.m05887 expressed protein
Length = 1638
Score = 26.2 bits (55), Expect = 8.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 223 NLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH 351
+L KE F LDV + EI + N ++V + E EH
Sbjct: 146 DLVKEVFTTFLDVARDDHPEIVFSSMQNIMIVLLEESEDVQEH 188
>At5g04750.1 68418.m00488 F1F0-ATPase inhibitor protein, putative
similar to F1F0-ATPase inhibitor protein [Oryza sativa
(japonica cultivar-group)] gi|5106371|dbj|BAA81661
Length = 94
Score = 26.2 bits (55), Expect = 8.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 48 LGAYRAPLQTTGPALRHGSEE-GRSVILHQFIPLDLALQKFILQTLE 185
+GA R+ + T GPA+R+ S++ GR + + + +QK + LE
Sbjct: 22 IGASRSVVSTRGPAIRYFSDDKGRVLSEEERAKESMYIQKMERERLE 68
>At3g53160.1 68416.m05858 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 490
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -3
Query: 260 TSKITSNFSFVKLIVEEDSCLAKLALQGLKYEFLKSEVEGNE 135
TS++ F KLI SC + +++Q ++ + +E N+
Sbjct: 131 TSRLAKKFKIPKLIFHGFSCFSLMSIQVVRESGILKMIESND 172
>At3g14415.1 68416.m01824 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative similar to
(S)-2-hydroxy-acid oxidase, peroxisomal (Glycolate
oxidase, GOX) (Short chain alpha-hydroxy acid oxidase)
[Spinacia oleracea] SWISS-PROT:P05414
Length = 367
Score = 26.2 bits (55), Expect = 8.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 218 VEEDSCLAKLALQGLKYEFLKSEVEGNELMEDNRSSFFR 102
V E +AK L + Y++ S E +++NR++F R
Sbjct: 6 VTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFAR 44
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,839,396
Number of Sequences: 28952
Number of extensions: 133058
Number of successful extensions: 465
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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