Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0106
(646 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo... 56 2e-08
At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A) 56 2e-08
At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR... 29 2.6
At5g15890.1 68418.m01859 expressed protein 29 3.5
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 28 4.6
At1g09770.1 68414.m01096 myb family transcription factor contain... 28 4.6
At1g03470.1 68414.m00328 kinase interacting family protein simil... 28 4.6
At5g54830.1 68418.m06829 DOMON domain-containing protein / dopam... 28 6.1
At1g02230.1 68414.m00161 no apical meristem (NAM) family protein... 28 6.1
At4g09010.1 68417.m01488 L-ascorbate peroxidase, chloroplast, pu... 27 8.1
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 27 8.1
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 27 8.1
At1g64530.1 68414.m07315 RWP-RK domain-containing protein simila... 27 8.1
At1g47710.1 68414.m05302 serpin, putative / serine protease inhi... 27 8.1
>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
ribosomal protein L14 - Human,PIR3:JC5954
Length = 134
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/56 (57%), Positives = 37/56 (66%)
Frame = +2
Query: 38 FARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLT 205
F RYVE GRVALV G GKLV +VDV+DQ RALVD P + R Q+ +L LT
Sbjct: 3 FKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAP--DMERIQMNFKRLSLT 56
Score = 48.0 bits (109), Expect = 5e-06
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +1
Query: 253 EAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 387
EA A + KW +S W +KL +++RA + D+DRFK+ A++K+
Sbjct: 73 EAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKK 117
>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
Length = 134
Score = 56.0 bits (129), Expect = 2e-08
Identities = 32/56 (57%), Positives = 38/56 (67%)
Frame = +2
Query: 38 FARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLT 205
F R+VE GRVALV G GKLV +VDV+DQ RALVD P + R Q+ L +L LT
Sbjct: 3 FKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAP--DMERIQMNLKRLSLT 56
Score = 48.8 bits (111), Expect = 3e-06
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +1
Query: 253 EAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 387
EA A + KW +S W +KL +++RA + D+DRFK+ A++KR
Sbjct: 73 EAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKR 117
>At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1179
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +1
Query: 181 PLKPTPSHKIPPQIR-VHSPYSSCEEAWTDAKLNE--KWTESQWAQKLAN 321
PL P P + + PYS EE W AK + KW + ++KL N
Sbjct: 618 PLMKLPKDFNPKNLTDFNLPYSEIEELWEGAKDTQKLKWVDLSHSRKLCN 667
>At5g15890.1 68418.m01859 expressed protein
Length = 526
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 156 PGPSTSARVWSITSTTLTNFPFKGPSATRATRP 58
P P T +VW+ TS T P +AT+P
Sbjct: 286 PSPDTDFKVWNYTSYNFTLHVMWSPFLVKATKP 318
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 50 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 202
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g09770.1 68414.m01096 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 844
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 325 EKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKXKAERAGTFGKKNI 465
E+RA+ T + + + T + + FK+LK + E A +F KKN+
Sbjct: 726 ERRAE-TVWTQIEATLKQAEIGGTEVECFKALKRQEEMAASFRKKNL 771
>At1g03470.1 68414.m00328 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 269
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +1
Query: 178 DPLKPTPSHKIPPQIRVHSPYSSCEE-AWTDA-KLNEKWTESQ 300
D L+P+ HK H S+C+E +W++A + +E++ ES+
Sbjct: 81 DLLRPSSVHKHGSDSESHEKSSTCDESSWSEACETHEEYAESE 123
>At5g54830.1 68418.m06829 DOMON domain-containing protein / dopamine
beta-monooxygenase N-terminal domain-containing protein
contains Pfam PF03351: DOMON domain
Length = 907
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 175 TDPLKPTPSHKIPPQIR-VHSPYSSCEEAWTDAKLNEKWTESQWAQK 312
T PLKP+ SH+ P+ + + P + + W + KWT+ Q ++
Sbjct: 613 TRPLKPSCSHRDRPECKNMIDPTTPLKVIWA---MGAKWTDGQLTER 656
>At1g02230.1 68414.m00161 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) protein
Length = 579
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +2
Query: 107 SVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPTRLVRKRGQMLNS 277
S V ++ T+ + GPG ++ +L + + K R + + RLV+K Q ++S
Sbjct: 305 STVQLVSLTQEVSQGPGQVTVIREHKLGEESVKKKRASFVYRMIHRLVKKIHQCVDS 361
>At4g09010.1 68417.m01488 L-ascorbate peroxidase, chloroplast,
putative identical to SP|P82281|TL29_ARATH (EC
1.11.1.11) {Arabidopsis thaliana}; ascorbate peroxidase
- Spinacia oleracea, (gi:1669585); contains Pfam domain
PF00141: Peroxidase; contains TIGRfam domain TIGR01409:
Tat (twin-arginine translocation) pathway signal
sequence; identical to ascorbate peroxidase APX4
(AT4g09010) mRNA, partial cds GI:31980499
Length = 349
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 211 PPQIRVHSPYSSCEEAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTA 372
P Q+ V S + ++A T+ L + W QK + TDY+ +TA
Sbjct: 266 PRQLAVMSAFLGPDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITA 319
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 50 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 202
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 50 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 202
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g64530.1 68414.m07315 RWP-RK domain-containing protein similar
to nodule inception protein [Lotus japonicus]
GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
Length = 841
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +2
Query: 35 PFARYVEPGRVALVADGP--LKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTK 208
P+ + P + L + P L ++ DV + R D GS R ++N + T+
Sbjct: 634 PWPHQIPPIDIQLAKNCPPTSTSPLSNLQDVKIENRDAEDSAGSSTSRASCKVNPICETR 693
Query: 209 FRLKYAFTAPTRLV 250
FRL P+R V
Sbjct: 694 FRLPTHNQEPSRQV 707
>At1g47710.1 68414.m05302 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 391
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = +2
Query: 101 LVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPTRLVRKRGQMLNSM 280
L ++D I T +D + +PR+Q+++ + + KF+ + F A L +G L S
Sbjct: 247 LSDLLDKIVSTPGFLD---NHIPRRQVKVREFKIPKFKFSFGFDASNVL---KGLGLTSP 300
Query: 281 KNGQK 295
+G++
Sbjct: 301 FSGEE 305
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,592,833
Number of Sequences: 28952
Number of extensions: 231605
Number of successful extensions: 695
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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