Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0044
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g06210.2 68415.m00683 phosphoprotein-related low similarity t...    28   4.8  
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t...    28   4.8  

>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
           phosphoprotein from Mus musculus GI:1236239; contains
           Pfam profile PF00515 TPR Domain
          Length = 852

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -2

Query: 303 LFFAMG*YQLTQKYFGE*LKKF---PDRWLIAYLAYEHY 196
           ++FA G + LT K +   L+KF    D  ++ YLA  HY
Sbjct: 483 VYFAQGNFALTVKMYQNCLRKFFYNTDSQILLYLARTHY 521


>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
           phosphoprotein from Mus musculus GI:1236239; contains
           Pfam profile PF00515 TPR Domain
          Length = 1064

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -2

Query: 303 LFFAMG*YQLTQKYFGE*LKKF---PDRWLIAYLAYEHY 196
           ++FA G + LT K +   L+KF    D  ++ YLA  HY
Sbjct: 695 VYFAQGNFALTVKMYQNCLRKFFYNTDSQILLYLARTHY 733


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,900,613
Number of Sequences: 28952
Number of extensions: 331592
Number of successful extensions: 601
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)