Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0022
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    82   4e-16
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            81   5e-16
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    28   6.1  
At3g55580.1 68416.m06171 regulator of chromosome condensation (R...    28   6.1  
At3g09210.1 68416.m01095 KOW domain-containing transcription fac...    27   8.1  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 36/55 (65%), Positives = 45/55 (81%)
 Frame = +2

Query: 242 LVQILRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 406
           L + ++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK  A  LFKIL KYRPE
Sbjct: 42  LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE 96



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 50/158 (31%), Positives = 69/158 (43%), Gaps = 1/158 (0%)
 Frame = +3

Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRF*DGP-SISASSARRLYFSVV*KCPLRSTNLPRHW 353
           NPLFE+RPK F IG  + P +DLSR+   P SI     +R+    + K P       +  
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRL-KVPPALNQFTKTL 78

Query: 354 TRLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLTKEAQHHPIRQNTVTKLVE 533
            +    +  +                             + +K+        N VT L+E
Sbjct: 79  DKNLATSLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIE 138

Query: 534 KKKAQLVVIAHDVDPIELVLFLPRYAVKWVYHTALSKG 647
           + KAQLVVIAHDVDPIELV++LP    K      + KG
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKG 176



 Score = 35.1 bits (77), Expect = 0.041
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 602 ALCRKMGVPYCIVKGQ 649
           ALCRKM VPYCIVKG+
Sbjct: 162 ALCRKMEVPYCIVKGK 177


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 35/55 (63%), Positives = 45/55 (81%)
 Frame = +2

Query: 242 LVQILRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 406
           L + ++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK  A  LFK+L KYRPE
Sbjct: 43  LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE 97



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 51/158 (32%), Positives = 69/158 (43%), Gaps = 1/158 (0%)
 Frame = +3

Query: 177 NPLFEKRPKNFAIGQGIQPTRDLSRF*DGP-SISASSARRLYFSVV*KCPLRSTNLPRHW 353
           NPLFE+RPK F IG  + P +DLSR+   P SI     +R+    + K P       +  
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRL-KVPPALNQFTKTL 79

Query: 354 TRLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLTKEAQHHPIRQNTVTKLVE 533
            +    +  +                             S +K+        N VT L+E
Sbjct: 80  DKNLATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESKKPIVVKYGLNHVTYLIE 139

Query: 534 KKKAQLVVIAHDVDPIELVLFLPRYAVKWVYHTALSKG 647
           + KAQLVVIAHDVDPIELV++LP    K      + KG
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKG 177



 Score = 35.1 bits (77), Expect = 0.041
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 602 ALCRKMGVPYCIVKGQ 649
           ALCRKM VPYCIVKG+
Sbjct: 163 ALCRKMEVPYCIVKGK 178


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 433  QPLFPGCFSLRPVFLQNLEKALSCSLVQCL 344
            QP  P CF L P  L  LE + +CS++  +
Sbjct: 992  QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021


>At3g55580.1 68416.m06171 regulator of chromosome condensation
           (RCC1) family protein UVB-resistance protein UVR8,
           Arabidopsis thaliana, EMBL:AF130441; contains Pfam
           PF00415: Regulator of chromosome condensation (RCC1)
           domain
          Length = 488

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 290 SGAGCGYTWAILKSGQVTSW 231
           SG GCG+  A  +SG++ +W
Sbjct: 69  SGGGCGFAMATAESGKLITW 88


>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
           family protein ; est match
          Length = 333

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 463 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 368
           L N S S  P+P+FPGC  +R +  + +  ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,525,149
Number of Sequences: 28952
Number of extensions: 225298
Number of successful extensions: 634
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)