Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0006
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catal...    83   2e-16
At5g63960.1 68418.m08031 DNA-directed DNA polymerase delta catal...    36   0.028
At4g28130.1 68417.m04033 diacylglycerol kinase accessory domain-...    27   7.4  
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s...    27   7.4  
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ...    27   9.7  

>At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catalytic
            subunit, putative similar to SP|O48653 DNA polymerase
            alpha catalytic subunit (EC 2.7.7.7) {Oryza sativa};
            contains Pfam profiles: PF03175 DNA polymerase type B,
            organellar and viral, PF00136 DNA polymerase family B,
            PF03104 DNA polymerase family B, exonuclease domain
          Length = 1492

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 45/95 (47%), Positives = 60/95 (63%), Gaps = 8/95 (8%)
 Frame = +3

Query: 255  VALRLNSKNSRR-FKKGDIVPYIIC-EDGTANSAT-----QRAYHIEELKNS-EHLKVDF 410
            VALR+  +  +  F   D VPYIIC E G A+SA+     +RA H +E+K+      VD 
Sbjct: 1200 VALRMRQRGYKEGFNAKDTVPYIICYEQGNASSASSAGIAERARHPDEVKSEGSRWLVDI 1259

Query: 411  KYYLAHQLHPVISRICEPIEGMDPARVADCLGLIP 515
             YYLA Q+HPV+SR+C  I+G  P R+A+CLGL P
Sbjct: 1260 DYYLAQQIHPVVSRLCAEIQGTSPERLAECLGLDP 1294



 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 35/82 (42%), Positives = 51/82 (62%)
 Frame = +1

Query: 10   RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
            +G+D+VR DWS L+ E G   LS+IL   + +D +E+I N L K+K+++   ++ L    
Sbjct: 1118 KGVDMVRRDWSLLSKEIGDLCLSKILYGGSCEDVVEAIHNELMKIKEEMRNGQVALEKYV 1177

Query: 190  ITKQLTKNPNEYADKHTQSHVQ 255
            ITK LTK P  Y D  +Q HVQ
Sbjct: 1178 ITKTLTKPPAAYPDSKSQPHVQ 1199


>At5g63960.1 68418.m08031 DNA-directed DNA polymerase delta catalytic
            subunit, putative (POLD1) similar to DNA polymerase delta
            [Glycine max] GI:2895198, OsPol delta large subunit
            [Oryza sativa (japonica cultivar-group) GI:9188570;
            contains Pfam profiles: PF03175 DNA polymerase type B,
            organellar and viral, PF00136 DNA polymerase family B,
            PF03104 DNA polymerase family B, exonuclease domain
          Length = 1081

 Score = 35.5 bits (78), Expect = 0.028
 Identities = 23/75 (30%), Positives = 41/75 (54%)
 Frame = +1

Query: 10   RGLDIVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKLKDDLIGNKMPLSVLA 189
            +G++ VR D   L        L++IL ++      E+++  ++    DL+ N++ LS+L 
Sbjct: 822  KGIETVRRDNCLLVKNLVTESLNKILIDRDVPGAAENVKKTIS----DLLMNRIDLSLLV 877

Query: 190  ITKQLTKNPNEYADK 234
            ITK LTK  ++Y  K
Sbjct: 878  ITKGLTKTGDDYEVK 892



 Score = 33.5 bits (73), Expect = 0.11
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 300  GDIVPYIICEDGTANSATQRAYH-IEELKNSEHLKVDFKYYLAHQLHPVISRICEPI 467
            GD VPY+I +      A +R+   I  L+N+  + +D  YYL +Q+   + RI EP+
Sbjct: 914  GDRVPYVIIKAAKGAKAYERSEDPIYVLQNN--IPIDPNYYLENQISKPLLRIFEPV 968


>At4g28130.1 68417.m04033 diacylglycerol kinase accessory
           domain-containing protein similar to diacylglycerol
           kinase [Lycopersicon esculentum] GI:10798892; contains
           Pfam profile PF00609: Diacylglycerol kinase accessory
           domain (presumed)
          Length = 466

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 85  LSEQTPDDRLESIQNHLNKLKDDLIGNKM 171
           L  +TPD  L+ I  +L +LKDD + +K+
Sbjct: 80  LEVETPDKVLQRIYLNLERLKDDSLASKI 108


>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
           similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
           (Replication factor C 36 kDa subunit, A1 36 kDa subunit,
           RF-C 36 kDa subunit, RFC36) [Homo sapiens]
          Length = 369

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 22  IVRLDWSXLAAEAGKFILSQILSEQTPDDRLESIQNHLNKL 144
           +V LD +    +  +F L +++ + T   R   I NH+NK+
Sbjct: 141 LVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKI 181


>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
           protein (ETT) identical to ETTIN GB:AF007788 from
           [Arabidopsis thaliana]
          Length = 608

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 419 SSTSATSCNIKNMRTNRRHGSSPRCRL 499
           SS   T+ N  N R    HG S RCRL
Sbjct: 526 SSVLLTNSNSPNGRLEDHHGGSGRCRL 552


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,739,988
Number of Sequences: 28952
Number of extensions: 255700
Number of successful extensions: 698
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)