Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0001
(677 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 52 5e-07
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 52 5e-07
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 50 1e-06
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 50 1e-06
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 46 2e-05
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 44 7e-05
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 42 4e-04
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 42 4e-04
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 42 4e-04
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 39 0.003
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 39 0.003
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 39 0.003
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 39 0.003
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 38 0.005
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 38 0.005
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 37 0.011
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 37 0.014
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 37 0.014
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 36 0.019
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 36 0.019
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 36 0.033
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 35 0.043
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 35 0.043
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 34 0.099
At2g47310.1 68415.m05906 flowering time control protein-related ... 34 0.099
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 33 0.23
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 32 0.30
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 32 0.40
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 31 0.53
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 31 0.53
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 31 0.53
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 31 0.53
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 31 0.70
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 31 0.70
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 31 0.70
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 31 0.70
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 31 0.70
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 30 1.2
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 30 1.2
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 30 1.2
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 30 1.2
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 30 1.2
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 30 1.2
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 30 1.6
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 29 2.1
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 29 2.1
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 29 2.1
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 29 2.8
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 29 2.8
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 29 2.8
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 29 3.7
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 29 3.7
At3g49170.1 68416.m05374 pentatricopeptide (PPR) repeat-containi... 29 3.7
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 29 3.7
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 29 3.7
At5g60410.2 68418.m07579 DNA-binding family protein contains Pfa... 28 4.9
At5g60410.1 68418.m07578 DNA-binding family protein contains Pfa... 28 4.9
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 28 4.9
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 28 4.9
At5g07350.1 68418.m00839 tudor domain-containing protein / nucle... 28 6.5
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 28 6.5
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 28 6.5
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 28 6.5
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 28 6.5
At3g01570.1 68416.m00087 glycine-rich protein / oleosin similar ... 27 8.6
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 27 8.6
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA 254
+VYVGNL ++ E+E F +G +RNVWVAR PPG+A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYA 41
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 51.6 bits (118), Expect = 5e-07
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA 254
+VYVGNL ++ E+E F +G +RNVWVAR PPG+A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYA 41
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAL*NSKTP 275
+VYVGNL ++ E+E F +G +R+VWVAR PPG+A + + P
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDP 48
Score = 33.9 bits (74), Expect = 0.099
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
++FEDPRDA D++R LDG G R+ + G
Sbjct: 43 LDFEDPRDARDAIRALDGKN--GWRVEQSHNRG 73
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA 254
+VYVGNL ++ E+E F +G IR+VWVAR PPG+A
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYA 41
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
++FED RDA D++R +DG G R+ + G
Sbjct: 43 LDFEDSRDARDAIREVDGKN--GWRVEQSHNRG 73
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +2
Query: 251 CIVEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
C VEFE RDAED+++G DG G R+RVE+++G
Sbjct: 48 CFVEFEHSRDAEDAIKGRDGYNLDGCRLRVELAHG 82
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 132 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNV 224
S +YVGNL + ++EIE IF KYG I ++
Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRIVDI 36
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
VEFEDPRDA+D++ G DG G R+RVE+++G
Sbjct: 50 VEFEDPRDADDAIYGRDGYDFDGCRLRVEIAHG 82
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAL*NSKTP 275
+YVGNL + K E+E +F KYG I ++ + PPG+A + P
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDP 55
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
VEF+D RDAED++ G DG G R+RVE+++G
Sbjct: 50 VEFDDARDAEDAIHGRDGYDFDGHRLRVELAHG 82
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFA 254
VYVGNL + + E+E +FSKYG + + V PPG+A
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYA 48
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
VEF+D RDAED++ G DG G R+RVE+++G
Sbjct: 50 VEFDDARDAEDAIHGRDGYDFDGHRLRVELAHG 82
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFA 254
VYVGNL + + E+E +FSKYG + + V PPG+A
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYA 48
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
VEF+D RDAED++ G DG G R+RVE+++G
Sbjct: 50 VEFDDARDAEDAIHGRDGYDFDGHRLRVELAHG 82
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFA 254
VYVGNL + + E+E +FSKYG + + V PPG+A
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYA 48
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
VEFED RDA+D++ G DG G +RVE+++G
Sbjct: 50 VEFEDARDADDAIYGRDGYDFDGHHLRVELAHG 82
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFA 254
+YVGNL + + E+E +FSKYG + + + PPG+A
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYA 48
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
VEFED RDA+D++ G DG G +RVE+++G
Sbjct: 50 VEFEDARDADDAIYGRDGYDFDGHHLRVELAHG 82
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFA 254
+YVGNL + + E+E +FSKYG + + + PPG+A
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYA 48
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
VEF DPRDA+D+ LDG G+RI VE S G
Sbjct: 8 VEFGDPRDADDARHYLDGRDFDGSRITVEFSRG 40
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
VEF DPRDA+D+ LDG G+RI VE S G
Sbjct: 49 VEFGDPRDADDARHYLDGRDFDGSRITVEFSRG 81
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/45 (33%), Positives = 29/45 (64%)
Frame = +3
Query: 105 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 239
M RY + + ++YVG L + ++E++FS+YG +R+V + R+
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
VEF DPRDA+D+ LDG G+RI VE S G
Sbjct: 49 VEFSDPRDADDARYYLDGRDFDGSRITVEASRG 81
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/45 (33%), Positives = 29/45 (64%)
Frame = +3
Query: 105 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 239
M RY + + ++YVG L + ++E++FS+YG +R+V + R+
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
VEF DPRDA+D+ LDG G+RI VE S G
Sbjct: 8 VEFSDPRDADDARYYLDGRDFDGSRITVEASRG 40
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +2
Query: 260 EFEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 355
EF DPRDA+D+ LDG G+RI VE S G
Sbjct: 20 EFGDPRDADDARHYLDGRDFDGSRITVEFSRG 51
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +3
Query: 129 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR 236
L K++VG L N S+ E++ +FSKYG I+++ + R
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +3
Query: 129 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR 236
L K++VG L N S+ E++ +FSKYG I+++ + R
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILR 139
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/43 (34%), Positives = 30/43 (69%)
Frame = +3
Query: 111 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 239
R R L K++VG+L A++ E+E+IF ++G++ +V++ R+
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/43 (34%), Positives = 30/43 (69%)
Frame = +3
Query: 111 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 239
R R L K++VG+L A++ E+E+IF ++G++ +V++ R+
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Frame = +3
Query: 102 KMSRYREWDLSC----KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR 236
++ R D SC K++VG L N S+ E++ +FS+YG I+++ + R
Sbjct: 94 ELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 142
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 248
++YVGNL N S+ ++ K+F +G++ V V R+ G
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETG 322
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +3
Query: 129 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR 236
L K++VG L N S+ E++ +FS+YG I+++ + R
Sbjct: 98 LEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 133
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 33.9 bits (74), Expect = 0.099
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 126 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 242
D KVYVGNL +K +E +FS+ G + + V+R P
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVP 212
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 33.9 bits (74), Expect = 0.099
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNV 224
K+YV + A++Y+I ++F KYGN+ +
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEI 139
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA 233
K+YV L +K E+ ++FS+YG I ++++A
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMA 239
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +3
Query: 135 CK-VYVGNLGTNASKYEIEKIFSKYGNIRN 221
CK ++VG +G N SK ++E+ FSK+G I +
Sbjct: 249 CKSLWVGGIGPNVSKDDLEEEFSKFGKIED 278
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 32.3 bits (70), Expect = 0.30
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 242
+++VG+L AS+ +++K+F G + V + +NP
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNP 249
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +3
Query: 126 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 239
D C ++VG L + ++ + ++ SKYG I+N+ + R+
Sbjct: 61 DPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRH 98
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 147 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAL 257
VGN+ +N YE++ +F ++G+I+ + A GF +
Sbjct: 221 VGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIM 257
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 31.5 bits (68), Expect = 0.53
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +3
Query: 117 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNI 215
R +D + ++YVGNL + +E++FS++G +
Sbjct: 201 RVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKV 233
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 239
+Y+G + + EIE FS++G ++ V VARN
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARN 94
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +3
Query: 102 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA 254
+++R+ E +Y+ NL + +++++FS+YGN+ + V NP G +
Sbjct: 322 RINRF-EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMS 371
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 248
VYV NL + E+ K F K+G I + V R+ G
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSG 266
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAL*NSKTPVMLKTL 293
V+VGNL K I K FSK+G + +V + P + K +MLK +
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLKQI 223
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 242
K+YVGNL N S+ ++ +IF +G + V + +P
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDP 300
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +3
Query: 132 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 248
S +YV NL + S ++++IFS +G + + V R+P G
Sbjct: 131 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNG 169
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 31.1 bits (67), Expect = 0.70
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV 224
VYVGN + ++E++FSK+G ++ V
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRV 31
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLDGT 313
V FED RDAED++R D T
Sbjct: 40 VYFEDERDAEDAIRRTDNT 58
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 135 CKVYVGNLGTNA-SKYEIEKIFSKYGNIRNVWVARNPPGFAL 257
C V V NL ++ + ++ +FS YGNI + + RN P AL
Sbjct: 245 CTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHAL 286
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 242 ARICIVEFEDPRDAEDSVRGLDGTRC--CGTRIRVE 343
A V ED RDAED++R LD G R+RVE
Sbjct: 35 AGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVE 70
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV 224
V+ GN +A + ++E++F KYG + V
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERV 31
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 242 ARICIVEFEDPRDAEDSVRGLDGTRC--CGTRIRVE 343
A V ED RDAED++R LD G R+RVE
Sbjct: 35 AGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVE 70
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV 224
V+ GN +A + ++E++F KYG + V
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERV 31
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 129 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 239
++ +VYVGNL + + + FS YGN+ + V R+
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRD 37
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = +3
Query: 102 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA 254
++SR+ + S +Y+ NL + + +++++FS+YGN+ + V N G +
Sbjct: 318 RISRFEKLQGS-NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS 367
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 248
VYV NL + E++K F KYG+I + V ++ G
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSG 262
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAL 257
++V N+ +N E+ +F +YG+IR ++ GF +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVM 208
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAL 257
++V N+ +N E+ +F +YG+IR ++ GF +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVM 208
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV 224
++V NL ++ S E+ IFS YG IR V
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREV 324
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 242 ARICIVEFEDPRDAEDSVRGLDGTRC--CGTRIRVE 343
A V ED RDAED++R LD G R+RVE
Sbjct: 35 AGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVE 70
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV 224
V+ GN +A + ++E++F KYG + V
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERV 31
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 239
K++VG + + ++ E++ F+KYGN+ V R+
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRD 143
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 239
K++VG + + ++ E++ F+KYGN+ V R+
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRD 143
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +3
Query: 117 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNI 215
R ++ + +VYVGNL + +E++FS++G +
Sbjct: 238 RVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 270
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -2
Query: 322 TAACSIKSTNRVFSITGVFEFYNANPGGFRATHTLRMLPYLENIFSISYLD 170
+A ++K+ NR + ++ PGG R L+M P LE S SYL+
Sbjct: 270 SADAALKALNRTEIAGKRIKLEHSRPGGARRNMMLQMNPELEQDDSYSYLN 320
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 242 ARICIVEFEDPRDAEDSVRGLDGT 313
A V FED RDAED++R D T
Sbjct: 9 AGYAFVYFEDERDAEDAIRRTDNT 32
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV 224
+YV NL N + E+ IF KYG IR +
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQI 48
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 257 VEFEDPRDAEDSVRGLD 307
V FED RDAED++R LD
Sbjct: 40 VYFEDERDAEDAIRKLD 56
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNV 224
V+VGN + ++E++F KYG + V
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRV 31
>At3g49170.1 68416.m05374 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 850
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 368 LSLCDHLTFRHESWCHSSVFHQVH--EQSLQHHGGLRILQCKSGRIS 234
LS C H+ E W H + ++ H + ++H+ + L C++G ++
Sbjct: 582 LSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLT 628
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 111 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNI 215
R + +L +++VG L + ++ ++E F +YG I
Sbjct: 4 RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKI 38
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 111 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNI 215
R + +L +++VG L + ++ ++E F +YG I
Sbjct: 4 RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKI 38
>At5g60410.2 68418.m07579 DNA-binding family protein contains Pfam
profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
PF00628 PHD-finger
Length = 885
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +3
Query: 387 VVPAADHTLAAGQCLHDGRLQFGRRSPSXPPFTITRPVAS 506
VVP + A L D L FGR PS F T+P AS
Sbjct: 727 VVPGSTGRSEANDGLVDNPLAFGRDDPSLQIFLPTKPDAS 766
>At5g60410.1 68418.m07578 DNA-binding family protein contains Pfam
profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
PF00628 PHD-finger
Length = 873
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +3
Query: 387 VVPAADHTLAAGQCLHDGRLQFGRRSPSXPPFTITRPVAS 506
VVP + A L D L FGR PS F T+P AS
Sbjct: 727 VVPGSTGRSEANDGLVDNPLAFGRDDPSLQIFLPTKPDAS 766
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 141 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 248
+YV NL + ++ ++F+++G I + V R+P G
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSG 365
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 75 FYPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 248
F PF K + + VYV NL + E++ F +YG+I + V R+ G
Sbjct: 205 FVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDG 262
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 132 SCKVYVGNLGTNASKYEIEKIFSKYGNI 215
S K++VG + + ++ + + FSKYG +
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEV 60
>At5g07350.1 68418.m00839 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 991
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 477 PFTITRPVASRLTAKPGIEKLCRFRKNNVKDL 572
P++ RP+ ++A PG+ +LCR V L
Sbjct: 833 PYSAIRPIDPSVSAAPGLAQLCRLAYIKVPSL 864
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +2
Query: 266 EDPRDAEDSVRGLDGTRC--CGTRIRVE 343
ED RDAED++R LD G R+RVE
Sbjct: 2 EDERDAEDAIRALDRFEFGRKGRRLRVE 29
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV 230
K++VGNL N ++ ++F GN+ V V
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEV 130
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 138 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV 230
K++VGNL N ++ ++F GN+ V V
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEV 130
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +3
Query: 93 IKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 239
I + S + ++ S VYVG + + ++ ++ +FS+YG I +V + R+
Sbjct: 22 ISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRD 70
>At3g01570.1 68416.m00087 glycine-rich protein / oleosin similar to
oleosin GB:AAB58402 [Sesamum indicum]
Length = 183
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 305 QVHEQSLQHHGGLRILQCKSGRISSYPYVTYVTV 204
QVH Q QH GG+++L +SG S+ +V V
Sbjct: 12 QVHPQR-QHEGGIKVLYPQSGPSSTQVLAVFVGV 44
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 135 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 242
C++YV N+ + ++ +F +G + +V V+RNP
Sbjct: 108 CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNP 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,195,668
Number of Sequences: 28952
Number of extensions: 245258
Number of successful extensions: 923
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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