Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10a23
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identica... 115 4e-26
At5g22500.1 68418.m02626 acyl CoA reductase, putative / male-ste... 94 1e-19
At3g44560.1 68416.m04789 acyl CoA reductase, putative similar to... 93 2e-19
At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to... 91 7e-19
At3g56700.1 68416.m06307 male sterility protein, putative simila... 86 3e-17
At3g44540.1 68416.m04787 acyl CoA reductase, putative similar to... 82 4e-16
At4g33790.1 68417.m04796 acyl CoA reductase, putative similar to... 46 3e-05
At5g22420.1 68418.m02615 acyl CoA reductase, putative similar to... 44 8e-05
At3g60060.1 68416.m06707 hypothetical protein male sterility pro... 40 0.001
At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase fam... 38 0.005
At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase fam... 38 0.007
At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase fam... 33 0.15
At2g37320.1 68415.m04577 pentatricopeptide (PPR) repeat-containi... 32 0.35
At3g51180.1 68416.m05603 zinc finger (CCCH-type) family protein ... 30 1.9
At2g28760.2 68415.m03498 NAD-dependent epimerase/dehydratase fam... 29 2.5
At2g28760.1 68415.m03497 NAD-dependent epimerase/dehydratase fam... 29 2.5
At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N) f... 29 3.3
At1g32100.1 68414.m03950 pinoresinol-lariciresinol reductase, pu... 29 3.3
At2g40910.2 68415.m05048 F-box protein-related similar to F-box... 29 4.4
At2g40910.1 68415.m05049 F-box protein-related similar to F-box... 29 4.4
At2g33630.1 68415.m04123 3-beta hydroxysteroid dehydrogenase/iso... 28 5.8
At3g12060.1 68416.m01500 expressed protein similar to hypothetic... 28 7.6
At3g07140.2 68416.m00851 GPI transamidase component Gpi16 subuni... 28 7.6
At3g07140.1 68416.m00850 GPI transamidase component Gpi16 subuni... 28 7.6
At2g30710.1 68415.m03746 RabGAP/TBC domain-containing protein si... 28 7.6
>At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identical
to male sterility protein 2 (MS2) SP:Q08891 (Arabidopsis
thaliana)
Length = 616
Score = 115 bits (276), Expect = 4e-26
Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 5/166 (3%)
Frame = +2
Query: 104 MTEESLVRAFYSGKNFFITGGTGFVGLCLIEKILRCIPDVGKVYLLMRPKKGKEISQRLE 283
M E + +F GK F ITG TGF+ LIEK+LR PDV K+YLL++ K + +RL+
Sbjct: 118 MKEGLGIISFLQGKKFLITGSTGFLAKVLIEKVLRMAPDVSKIYLLIKAKSKEAAIERLK 177
Query: 284 -EFPKNLVFEKLLETNTTD----IFKKLVPISGDVGEANLGLSPQDRQLLIENVNVVIHS 448
E +F L ET+ + KL+P++G++ ++N+GL + + + V+V+I+S
Sbjct: 178 NEVLDAELFNTLKETHGASYMSFMLTKLIPVTGNICDSNIGLQADSAEEIAKEVDVIINS 237
Query: 449 AATLDFQENLRPTVRINLLGTRQVMGLCKEIKNLKVMIHVSSAYVN 586
AA F E + IN G +MG K+ K LK+ + VS+AYVN
Sbjct: 238 AANTTFNERYDVALDINTRGPGNLMGFAKKCKKLKLFLQVSTAYVN 283
>At5g22500.1 68418.m02626 acyl CoA reductase, putative /
male-sterility protein, putative similar to acyl CoA
reductase [Simmondsia chinensis] GI:5020215; contains
Pfam profile PF03015: Male sterility protein; identical
to cDNA male sterility 2-like protein GI:1491614
Length = 491
Score = 93.9 bits (223), Expect = 1e-19
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 7/165 (4%)
Frame = +2
Query: 113 ESLVRAFYSGKNFFITGGTGFVGLCLIEKILRCIPDVGKVYLLMRPKKGKEISQRLEEFP 292
ES F K ITG GF+ L+EKILR P+V K+YLL+R K QRL
Sbjct: 2 ESNCVQFLGNKTILITGAPGFLAKVLVEKILRLQPNVKKIYLLLRAPDEKSAMQRLRSEV 61
Query: 293 KNLVFEKLLETNTTD------IFKKLVPISGDVGEANLGLSPQDR-QLLIENVNVVIHSA 451
+ K+L N + + +K+VP+ GD+ NLGL D Q + ++++I+ A
Sbjct: 62 MEIDLFKVLRNNLGEDNLNALMREKIVPVPGDISIDNLGLKDTDLIQRMWSEIDIIINIA 121
Query: 452 ATLDFQENLRPTVRINLLGTRQVMGLCKEIKNLKVMIHVSSAYVN 586
AT +F E + IN G V+ K+ ++++HVS+AY++
Sbjct: 122 ATTNFDERYDIGLGINTFGALNVLNFAKKCVKGQLLLHVSTAYIS 166
>At3g44560.1 68416.m04789 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 449
Score = 93.1 bits (221), Expect = 2e-19
Identities = 53/160 (33%), Positives = 91/160 (56%), Gaps = 9/160 (5%)
Frame = +2
Query: 131 FYSGKNFFITGGTGFVGLCLIEKILRCIPDVGKVYLLMRPKKGKEISQRL--EEFPKNLV 304
F K +TG TGF+ +EKILR P+V K+YL++R + ++RL E F K+L
Sbjct: 8 FLQNKTILVTGATGFLAKVFVEKILRVQPNVNKLYLVVRASDNEAATKRLRTEAFEKDLF 67
Query: 305 FEKLLETNTTD------IFKKLVPISGDVGEANLGLSPQD-RQLLIENVNVVIHSAATLD 463
K+L N D + +K+VP++GD+ +LG+ + R+ + + +++V++ AAT +
Sbjct: 68 --KVLRDNLGDEKLNTLLSEKVVPVAGDIAMDHLGMKDSNLRERMQKEIDIVVNVAATTN 125
Query: 464 FQENLRPTVRINLLGTRQVMGLCKEIKNLKVMIHVSSAYV 583
F E + IN G V+ K+ ++++HVS+AYV
Sbjct: 126 FDERYDIGLGINTFGALNVLNFAKKCVKAQLLLHVSTAYV 165
>At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 402
Score = 91.1 bits (216), Expect = 7e-19
Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 9/160 (5%)
Frame = +2
Query: 131 FYSGKNFFITGGTGFVGLCLIEKILRCIPDVGKVYLLMRPKKGKEISQRL--EEFPKNLV 304
F K +TG TGF+ +EKILR P+V K+YLL+R + ++RL E F K L
Sbjct: 8 FLRNKTILVTGATGFLAKVFVEKILRVQPNVKKLYLLVRASDNEAATKRLRTEVFEKELF 67
Query: 305 FEKLLETNTTD------IFKKLVPISGDVGEANLGLSPQD-RQLLIENVNVVIHSAATLD 463
K+L N D +++K+V + GD+ LG++ R+ + + +++V++ AAT +
Sbjct: 68 --KVLRQNLGDEKLNTLLYEKVVSVPGDIATDQLGINDSHLRERMQKEIDIVVNVAATTN 125
Query: 464 FQENLRPTVRINLLGTRQVMGLCKEIKNLKVMIHVSSAYV 583
F E + IN G V+ K+ +++++HVS+AYV
Sbjct: 126 FDERYDVGLGINTFGALNVLNFAKKCVKVQLLLHVSTAYV 165
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 85.8 bits (203), Expect = 3e-17
Identities = 47/154 (30%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Frame = +2
Query: 83 TPEGRNKMTEESL-VRAFYSGKNFFITGGTGFVGLCLIEKILRCIPDVGKVYLLMRPKKG 259
TP+ + + + F GK++ +TG TGF+ LIEK+LR ++GK++LLMR K
Sbjct: 63 TPKTETSRNSDGIGIVRFLEGKSYLVTGATGFLAKVLIEKLLRESLEIGKIFLLMRSKDQ 122
Query: 260 KEISQRL-EEFPKNLVFE--KLLETNTTDIF--KKLVPISGDVGEANLGLSPQDRQLLIE 424
+ ++RL +E + +F+ K + ++ + F +KL+P+ GD+ E NLG+ + ++ E
Sbjct: 123 ESANKRLYDEIISSDLFKLLKQMHGSSYEAFMKRKLIPVIGDIEEDNLGIKSEIANMISE 182
Query: 425 NVNVVIHSAATLDFQENLRPTVRINLLGTRQVMG 526
++V+I F + + +N LG V G
Sbjct: 183 EIDVIISCGGRTTFDDRYDSALSVNALGPAYVTG 216
>At3g44540.1 68416.m04787 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 433
Score = 81.8 bits (193), Expect = 4e-16
Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 7/158 (4%)
Frame = +2
Query: 131 FYSGKNFFITGGTGFVGLCLIEKILRCIPDVGKVYLLMRPKKGKEISQRL--EEFPKNL- 301
F K +TG GF+ +EKILR P V K++LL+R + QR E K+L
Sbjct: 8 FLHDKTILVTGVPGFLAKVFVEKILRIQPKVKKLFLLLRAADNESAMQRFHSEVLEKDLF 67
Query: 302 -VFEKLL--ETNTTDIFKKLVPISGDVGEANLGLSPQD-RQLLIENVNVVIHSAATLDFQ 469
V + L E I +K+VPI GD+ NLG+ D Q + ++++++ AAT +F
Sbjct: 68 RVLKNALGDENLKAFITEKVVPIPGDISVDNLGVKGSDLLQHMWNEIDIIVNVAATTNFD 127
Query: 470 ENLRPTVRINLLGTRQVMGLCKEIKNLKVMIHVSSAYV 583
E + +N G V+ K+ ++++HVS+AYV
Sbjct: 128 ERYDVGLSVNTFGPLNVLNFAKKCVKGQLLLHVSTAYV 165
>At4g33790.1 68417.m04796 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein;
No start codon identified, may contain anomalous
splicing at 5' end.
Length = 380
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +2
Query: 416 LIENVNVVIHSAATLDFQENLRPTVRINLLGTRQVMGLCKEIKNLKVMIHVSSAYV 583
+I V+ +++ AAT F E + IN LG V+ K +K+++HVS+AYV
Sbjct: 1 MIHQVDAIVNLAATTKFDERYDVALGINTLGALNVLNFAKRCAKVKILVHVSTAYV 56
>At5g22420.1 68418.m02615 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 409
Score = 44.4 bits (100), Expect = 8e-05
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +2
Query: 131 FYSGKNFFITGGTGFVGLCLIEKILRCIPDVGKVYLLMRPKKGKEISQRLE 283
F + +TG +GF+ L+E+ILR P+V ++YLL+R K QR +
Sbjct: 8 FLENRTILVTGASGFLAKVLVERILRLQPNVKRLYLLVRASDKKSAEQRYD 58
>At3g60060.1 68416.m06707 hypothetical protein male sterility
protein 2 - Brassica napus, PIR:T08096
Length = 154
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +2
Query: 338 IFKKLVPISGDVGEANLGLSPQDRQLLIENVNVVIHSAATLDFQENL 478
I KL+P+ D+ E NLG+ + + E ++++I SAAT F ++L
Sbjct: 52 ILSKLLPVVEDIAEDNLGVDSETSLKISEEIDIIISSAATTTFDDSL 98
>At1g78570.1 68414.m09157 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 669
Score = 38.3 bits (85), Expect = 0.005
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 3/152 (1%)
Frame = +2
Query: 128 AFYSGKNFFITGGTGFVGLCLIEKILRCIPDVGKVYLLMRPKKGKEISQRLEEFPKNLVF 307
A Y+ KN ITG GF+ + +++R PD K+ +L +L ++ NL
Sbjct: 2 ASYTPKNILITGAAGFIASHVANRLIRSYPDY-KIVVL----------DKL-DYCSNL-- 47
Query: 308 EKLLETNTTDIFKKLVPISGDVGEANLGLSPQDRQLLIENVNVVIHSAATLDFQE---NL 478
+ L + + FK + GD+ A+L + L+ E ++ ++H AA N
Sbjct: 48 KNLNPSKHSPNFKF---VKGDIASADL----VNHLLITEGIDTIMHFAAQTHVDNSFGNS 100
Query: 479 RPTVRINLLGTRQVMGLCKEIKNLKVMIHVSS 574
+ N+ GT ++ CK ++ IHVS+
Sbjct: 101 FEFTKNNIYGTHVLLEACKVTGQIRRFIHVST 132
>At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461,
Saccharopolyspora spinosa GI:15077647, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 664
Score = 37.9 bits (84), Expect = 0.007
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 3/152 (1%)
Frame = +2
Query: 128 AFYSGKNFFITGGTGFVGLCLIEKILRCIPDVGKVYLLMRPKKGKEISQRLEEFPKNLVF 307
A Y KN ITG GF+ + +++R PD K+ +L +L ++ NL
Sbjct: 2 ATYKPKNILITGAAGFIASHVANRLVRSYPDY-KIVVL----------DKL-DYCSNL-- 47
Query: 308 EKLLETNTTDIFKKLVPISGDVGEANLGLSPQDRQLLIENVNVVIHSAATLDFQE---NL 478
+ L + ++ FK + GD+ A+L + L+ E ++ ++H AA N
Sbjct: 48 KNLNPSKSSPNFKF---VKGDIASADL----VNYLLITEEIDTIMHFAAQTHVDNSFGNS 100
Query: 479 RPTVRINLLGTRQVMGLCKEIKNLKVMIHVSS 574
+ N+ GT ++ CK ++ IHVS+
Sbjct: 101 FEFTKNNIYGTHVLLEACKVTGQIRRFIHVST 132
>At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase family
protein low similarity to dTDP-D-glucose-4,6-dehydratase
from Aneurinibacillus thermoaerophilus GI:16357461,
Sphingomonas sp. GI:1314581; contains Pfam profile
PF01370: NAD dependent epimerase/dehydratase family;
putative NDP-rhamnose synthase (rhm2 gene) GI:31559258
Length = 667
Score = 33.5 bits (73), Expect = 0.15
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 3/150 (2%)
Frame = +2
Query: 134 YSGKNFFITGGTGFVGLCLIEKILRCIPDVGKVYLLMRPKKGKEISQRLEEFPKNLVFEK 313
Y KN ITG GF+ + +++R PD K+ +L + ++ KNL
Sbjct: 6 YKPKNILITGAAGFIASHVANRLIRNYPDY-KIVVLDKLDYCSDL--------KNLD--- 53
Query: 314 LLETNTTDIFKKLVPISGDVGEANLGLSPQDRQLLIENVNVVIHSAATLDFQENLRPTVR 493
+ ++ FK + GD+ +L + L+ EN++ ++H AA + +
Sbjct: 54 --PSFSSPNFKF---VKGDIASDDL----VNYLLITENIDTIMHFAAQTHVDNSFGNSFE 104
Query: 494 I---NLLGTRQVMGLCKEIKNLKVMIHVSS 574
N+ GT ++ CK ++ IHVS+
Sbjct: 105 FTKNNIYGTHVLLEACKVTGQIRRFIHVST 134
>At2g37320.1 68415.m04577 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 500
Score = 32.3 bits (70), Expect = 0.35
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +1
Query: 163 RNRLCRFMSYRENIKMHS*CWQSLLINETQE---RKRNISTTRGVS*KPGL*EASRNEHN 333
RN CR Y+++ +S + NE+ E R R++ +S K G ++R +H
Sbjct: 5 RNYYCRAFGYKQSRSCYSRSLNREIANESSEVERRARSLRVLDIISSKSG-GVSNRQDHF 63
Query: 334 GYLQE-TSPDLWRCR 375
G++QE D WR R
Sbjct: 64 GFVQEFRQTDSWRFR 78
>At3g51180.1 68416.m05603 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 521
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -2
Query: 638 QPPPAQGTPSRELPLNKN*HRPMKRVSSP 552
QP PA+ PS LP+N N HRP S P
Sbjct: 343 QPQPAR-FPSSSLPMNLNFHRPPNVFSEP 370
>At2g28760.2 68415.m03498 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 343
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 131 FYSGKNFFITGGTGFVGLCLIEKILR 208
F S +TGG GF+G L++K+++
Sbjct: 27 FQSNMRILVTGGAGFIGSHLVDKLMQ 52
>At2g28760.1 68415.m03497 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 343
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 131 FYSGKNFFITGGTGFVGLCLIEKILR 208
F S +TGG GF+G L++K+++
Sbjct: 27 FQSNMRILVTGGAGFIGSHLVDKLMQ 52
>At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N)
family protein similar to SP|P36419 Aspartyl-tRNA
synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase)
(AspRS) {Thermus thermophilus}; contains Pfam profile
PF00152: tRNA synthetases class II (D, K and N)
Length = 664
Score = 29.1 bits (62), Expect = 3.3
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Frame = +2
Query: 191 IEKILRCIPDVGKVYLLMRPKKGKEISQRLEEFPKNLVFEKLLETNTTDIFKKLVPISGD 370
I K+L C+P K Y KKG ++ ++ K L F K+L+ + LV
Sbjct: 399 IIKVL-CVPLGAKKYSNSALKKGDIYNEAMKSGAKGLPFLKVLDNGEIEGIAALVSSLDS 457
Query: 371 VGEANL----GLSPQDRQLLIENVNVVIHSAATLD 463
G+ N G +P D L++ V V TLD
Sbjct: 458 AGKINFVKQCGAAPGD--LILFGVGPVTSVNKTLD 490
>At1g32100.1 68414.m03950 pinoresinol-lariciresinol reductase,
putative similar to pinoresinol-lariciresinol reductase
TH1 [Tsuga heterophylla][GI:7578915]; contains
isoflavone reductase domain PF02716
Length = 317
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +2
Query: 155 ITGGTGFVGLCLIEKILR-CIPDVGKVYLLMRPKKGKEISQRLEEFPKNLVFEKL 316
+ G TG++G ++I+R C+ + + Y+L RP+ G EI ++++ F L F+KL
Sbjct: 14 VVGATGYIG----KRIVRACLAEGHETYVLQRPEIGLEI-EKVQLF---LSFKKL 60
>At2g40910.2 68415.m05048 F-box protein-related similar to F-box
protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; similar to F-box protein family, AtFBX8
(GI:20197464) [Arabidopsis thaliana]
Length = 442
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 519 TCLVPRRLILTVGLKFS*KSKVAAECITTLTFSINSCR 406
TC +P L++ + ++ KS V +CI+ S+ SCR
Sbjct: 59 TCEIPPDLLMEIVMRLPAKSMVRFKCISKQWSSLISCR 96
>At2g40910.1 68415.m05049 F-box protein-related similar to F-box
protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; similar to F-box protein family, AtFBX8
(GI:20197464) [Arabidopsis thaliana]
Length = 449
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 519 TCLVPRRLILTVGLKFS*KSKVAAECITTLTFSINSCR 406
TC +P L++ + ++ KS V +CI+ S+ SCR
Sbjct: 66 TCEIPPDLLMEIVMRLPAKSMVRFKCISKQWSSLISCR 103
>At2g33630.1 68415.m04123 3-beta hydroxysteroid
dehydrogenase/isomerase family protein contains Pfam
profile PF01073 3-beta hydroxysteroid
dehydrogenase/isomerase domain; similar to
NAD(P)-dependent cholesterol dehydrogenase [Nocardia
sp.] [GI:216809]
Length = 480
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 140 GKNFFITGGTGFVGLCLIEKILR 208
G F +TGG GFVG L +++R
Sbjct: 11 GNTFVVTGGLGFVGAALCLELVR 33
>At3g12060.1 68416.m01500 expressed protein similar to hypothetical
protein GB:CAB82953 GI:7340710 from [Arabidopsis
thaliana]
Length = 556
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 272 QRLEEFPKNLVFEKLLETNTTDIFKKLVPISGDVGEANLGLSPQDRQ 412
+ L KNL FE + TTD K + I G A +S D +
Sbjct: 103 ENLTAVTKNLTFESPVANGTTDTNAKTITIQFQTGHAKENISCPDNK 149
>At3g07140.2 68416.m00851 GPI transamidase component Gpi16 subunit
family protein similar to phosphatidyl inositol glycan
class T (GI:14456615) [Homo sapiens]; contains Pfam
profile PF04113: Gpi16 subunit, GPI transamidase
component
Length = 643
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +2
Query: 413 LLIENVNVVIHSAATLDFQENLRPTVRINLLGTRQVMGLCKEIKNLKVMIHV 568
+++E V+ T + N++P+ ++ L RQV+G C K+ V + +
Sbjct: 234 IVLEQTLTVVLQPETTSVESNMQPSWSLSSLFGRQVVGRCVLAKSSNVYLQL 285
>At3g07140.1 68416.m00850 GPI transamidase component Gpi16 subunit
family protein similar to phosphatidyl inositol glycan
class T (GI:14456615) [Homo sapiens]; contains Pfam
profile PF04113: Gpi16 subunit, GPI transamidase
component
Length = 644
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +2
Query: 413 LLIENVNVVIHSAATLDFQENLRPTVRINLLGTRQVMGLCKEIKNLKVMIHV 568
+++E V+ T + N++P+ ++ L RQV+G C K+ V + +
Sbjct: 234 IVLEQTLTVVLQPETTSVESNMQPSWSLSSLFGRQVVGRCVLAKSSNVYLQL 285
>At2g30710.1 68415.m03746 RabGAP/TBC domain-containing protein
similar to SP|Q08484 GTPase-activating protein GYP1
{Saccharomyces cerevisiae}; contains Pfam profile
PF00566: TBC domain
Length = 440
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 331 NGYLQETSPDLWRCR*GESRPKSSRPAAVDRERQCGY 441
NG PD+WR G + P S R AV R ++ Y
Sbjct: 142 NGVPHYMRPDVWRLLLGYAPPNSDRREAVLRRKRLEY 178
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,566,223
Number of Sequences: 28952
Number of extensions: 283266
Number of successful extensions: 726
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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