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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10a21
         (795 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10070.1 68416.m01207 transcription initiation factor IID (TF...   108   4e-24
At1g17440.2 68414.m02133 transcription initiation factor IID (TF...   105   3e-23
At1g17440.1 68414.m02132 transcription initiation factor IID (TF...   105   3e-23
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui...    29   2.7  
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote...    29   2.7  
At1g67140.1 68414.m07638 expressed protein                             29   2.7  
At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol...    29   4.7  
At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein ...    28   8.2  

>At3g10070.1 68416.m01207 transcription initiation factor IID
           (TFIID) subunit A family protein similar to hypothetical
           protein GB:CAB10099 [Schizosaccharomyces pombe];
           contains Pfam profile PF03847: Transcription initiation
           factor TFIID subunit A
          Length = 539

 Score =  108 bits (260), Expect = 4e-24
 Identities = 50/156 (32%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
 Frame = +2

Query: 197 QGAIQYVNNPMQSPQLQNTSIQGS--PSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRL 370
           Q  + + + P +   L N  +     PSQ  P+      AK           ++L +  +
Sbjct: 347 QQPLAHPHQPTRVQGLVNQKVTSPVMPSQ-PPVAQPGNHAKTVSAETEPSDDRILGKRSI 405

Query: 371 QELVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQ 550
            EL++++DP+ +LD EVE++L  +A+DF+++     C+LAKHR +  +E +D+ LH+ER 
Sbjct: 406 HELLQQIDPSEKLDPEVEDILSDIAEDFVESITTFGCSLAKHRKSDILEAKDILLHVERN 465

Query: 551 WNMWIPGFGNDELRPYKRAAVTEAHRQRMALIRKSI 658
           WN+  PGF +DE + +++   T+ H++R+A I+KS+
Sbjct: 466 WNIRPPGFSSDEFKTFRKPLTTDIHKERLAAIKKSV 501


>At1g17440.2 68414.m02133 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score =  105 bits (252), Expect = 3e-23
 Identities = 54/151 (35%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
 Frame = +2

Query: 215 VNNPMQSPQL------QNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQE 376
           +N    SP++      ++ S+ GS  + +  GT +      QG   + ++QLL + ++Q+
Sbjct: 478 INQQQPSPRMLSHAGQKSVSLTGSQPEATQSGTTTPGGSSSQG--TEATNQLLGKRKIQD 535

Query: 377 LVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWN 556
           LV +VD   +LD +VE++LL++ADDFID+  + AC+LAKHR +  +E +D+ LHLE+  +
Sbjct: 536 LVSQVDVHAKLDPDVEDLLLEVADDFIDSVTSFACSLAKHRKSSVLEPKDILLHLEKNLH 595

Query: 557 MWIPGFGNDELRPYKRAAVTEAHRQRMALIR 649
           + IPGF +++ R  K    T+ H++R+A++R
Sbjct: 596 LTIPGFSSEDKRQTK-TVPTDLHKKRLAMVR 625


>At1g17440.1 68414.m02132 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score =  105 bits (252), Expect = 3e-23
 Identities = 54/151 (35%), Positives = 96/151 (63%), Gaps = 6/151 (3%)
 Frame = +2

Query: 215 VNNPMQSPQL------QNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQE 376
           +N    SP++      ++ S+ GS  + +  GT +      QG   + ++QLL + ++Q+
Sbjct: 478 INQQQPSPRMLSHAGQKSVSLTGSQPEATQSGTTTPGGSSSQG--TEATNQLLGKRKIQD 535

Query: 377 LVREVDPTVQLDEEVEEMLLQLADDFIDTTLNSACALAKHRHAPNVELRDVQLHLERQWN 556
           LV +VD   +LD +VE++LL++ADDFID+  + AC+LAKHR +  +E +D+ LHLE+  +
Sbjct: 536 LVSQVDVHAKLDPDVEDLLLEVADDFIDSVTSFACSLAKHRKSSVLEPKDILLHLEKNLH 595

Query: 557 MWIPGFGNDELRPYKRAAVTEAHRQRMALIR 649
           + IPGF +++ R  K    T+ H++R+A++R
Sbjct: 596 LTIPGFSSEDKRQTK-TVPTDLHKKRLAMVR 625


>At5g02880.1 68418.m00231 HECT-domain-containing protein /
            ubiquitin-transferase family protein /
            armadillo/beta-catenin-like repeat-containing protein
            similar to SP|Q14669 Thyroid receptor interacting protein
            12 (TRIP12) {Homo sapiens}; contains Pfam profiles
            PF00632: HECT-domain (ubiquitin-transferase), PF00514:
            Armadillo/beta-catenin-like repeat
          Length = 1502

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
 Frame = +2

Query: 230  QSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRL--QELVREVDPTV 403
            QS QLQ+TSI       SPM   S+ +   Q     Q SQ+  + +L  Q+     + + 
Sbjct: 822  QSSQLQSTSISCQAESSSPMEIDSESSDASQ----LQGSQVEDQTQLPGQQNASSSETSS 877

Query: 404  QLDEEVEEMLLQLADDFIDTTLNSACALAKHR 499
            + ++ V  +L +L    +D +L    A+  H+
Sbjct: 878  EKEDAVPRLLFRLEGLELDRSLTVYQAILLHK 909


>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase (RKL1),
           Arabidopsis thaliana, EMBL:AF084034
          Length = 660

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +2

Query: 242 LQNTSIQGSPSQHSPMGTQSQVAKVGQGGAGDQSSQLLSRPRLQEL 379
           L+N SI GS    SP+     +     G +G  SS +LS  RL EL
Sbjct: 106 LENNSISGSIPDLSPLVNLKTLTLSKNGFSGTLSSSILSLRRLTEL 151


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 353  LSRPRLQELVREVDPTVQLDEEVEEMLLQLADDFIDTTLNS 475
            LS   L+ LV E DP   +DE++E+ L Q+ D+  D+ + +
Sbjct: 982  LSVSTLRHLV-EKDPVSVIDEQIEDNLFQMLDEETDSEIGN 1021


>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
           oligopeptidase family protein low similarity to
           SP|Q99797 Mitochondrial intermediate peptidase,
           mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
           contains Pfam profile PF01432: Peptidase family M3
          Length = 860

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/64 (25%), Positives = 25/64 (39%)
 Frame = +2

Query: 155 LAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVAKVGQGGAG 334
           L   A    I   G+G +    NP  + + QN+ I+   ++       S  + VG G   
Sbjct: 677 LTDLAGKEIISVHGEGIVPATTNPRFAIKCQNSQIESDTTEDPSRSKNSSSSGVGFGSPA 736

Query: 335 DQSS 346
             SS
Sbjct: 737 SSSS 740


>At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein /
           GYF domain-containing protein contains Pfam domains
           PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
           similar), PF02213: GYF domain
          Length = 659

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +2

Query: 143 SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPM---GTQSQVA- 310
           S  S     ++P +     GA+Q    P+ +P   N S+  S + HSP    G QS  + 
Sbjct: 350 SGQSQTSRIDIPVVVN-SAGALQPQTYPIPTPDPINVSVNHSATLHSPTPAGGKQSWGSM 408

Query: 311 KVGQGGAGDQSSQ 349
           +   GG+   SSQ
Sbjct: 409 QTDHGGSNTPSSQ 421


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,772,146
Number of Sequences: 28952
Number of extensions: 279509
Number of successful extensions: 760
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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