Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10a12
(580 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin... 30 0.97
At5g62250.1 68418.m07816 microtubule associated protein (MAP65/A... 30 1.3
At4g02110.1 68417.m00282 BRCT domain-containing protein contains... 29 2.2
At2g02700.1 68415.m00210 DC1 domain-containing protein contains ... 29 2.2
At1g04050.1 68414.m00392 SET domain-containing protein / suppres... 29 2.2
At5g43240.1 68418.m05284 hypothetical protein contains Pfam prof... 29 3.0
At3g55110.1 68416.m06120 ABC transporter family protein ATP-bind... 29 3.0
At2g13950.1 68415.m01550 DC1 domain-containing protein contains ... 29 3.0
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ... 28 3.9
At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1... 28 3.9
At5g17410.2 68418.m02043 tubulin family protein similar to spind... 28 5.2
At5g17410.1 68418.m02042 tubulin family protein similar to spind... 28 5.2
At2g36720.1 68415.m04505 PHD finger transcription factor, putative 28 5.2
At2g32240.1 68415.m03940 expressed protein contains Pfam profile... 28 5.2
At1g61840.1 68414.m06978 DC1 domain-containing protein similar t... 28 5.2
At2g30395.1 68415.m03700 expressed protein 27 6.8
At2g02690.1 68415.m00208 hypothetical protein 27 6.8
At5g15170.1 68418.m01777 tyrosyl-DNA phosphodiesterase-related s... 27 9.0
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ... 27 9.0
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ... 27 9.0
At1g48840.1 68414.m05468 expressed protein contains Pfam profile... 27 9.0
At1g34060.1 68414.m04222 alliinase family protein contains Pfam ... 27 9.0
>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
protein-related contains Pfam profiles PF03107: DC1
domain, weak hit to PF00628: PHD-finger
Length = 513
Score = 30.3 bits (65), Expect = 0.97
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 168 KYHKNCTKDPNELEDPTRKQPDEQLTRKLKPLTTKPLCDCSNCTCK 305
+YHK C + P E+ P+ Q Q+ L+TKP C C+ K
Sbjct: 24 RYHKECVESPLEITYPSHPQHSLQIY-----LSTKPFEHCILCSRK 64
>At5g62250.1 68418.m07816 microtubule associated protein
(MAP65/ASE1) family protein low similarity to protein
regulating cytokinesis 1 (PRC1) [Homo sapiens]
GI:2865521; contains Pfam profile PF03999: Microtubule
associated protein (MAP65/ASE1 family)
Length = 549
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = -1
Query: 478 IISHVQFRVLFNTSSKLWQSFMDTSCELSSICSTFFVPKSQESSVTLIEKV 326
+ + ++F L +T ++ Q FMD SC +++ S P S S+ L+E+V
Sbjct: 253 VTTMLEFWNLMDTPAEEQQKFMDVSCNIAATVSEITKPNS--LSIDLLEEV 301
>At4g02110.1 68417.m00282 BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 1293
Score = 29.1 bits (62), Expect = 2.2
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Frame = +3
Query: 192 DPNELEDPTRKQPDEQLTRKLKPLTTKPLCDC--------SNCTCKDCPD--VLKTFSIN 341
DP E E+ K P +L KL P+ D SNC + P+ + + + N
Sbjct: 418 DPTESEEAGHKSPTSELNTKLLSSNVVPMVDALSTAENIISNCAWDEIPEKSLTERMTEN 477
Query: 342 VTEDSCDFGTKK-----VEQIDESSHEVSIKDCQSLL 437
V G+ K V + E++HE+ + D + L
Sbjct: 478 VLLQEQRSGSPKQNLSVVPNLREAAHELDLSDSAARL 514
>At2g02700.1 68415.m00210 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 499
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 105 VLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQL 242
+ N +K+ Y+F + +YHK C + P E+ P+ + QL
Sbjct: 132 ICNTRKVGTCYYFCV--ECDQRYHKECVESPLEINYPSHVKHSLQL 175
>At1g04050.1 68414.m00392 SET domain-containing protein / suppressor
of variegation related 1 (SUVR1) identical to suppressor
of variegation related 1 [Arabidopsis thaliana]
GI:15004614; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA trithorax 3
(ATX3) partial cds GI:15217142
Length = 630
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/64 (23%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +3
Query: 384 QIDESSHEVSIKDCQSL--LDVLNNTRNCTCEIIAKVVRSNVYIHRGKHKVSDIIDETNV 557
++ E+S V + D ++ V+++T NC+ ++ ++ +SN+++ + DI+++T
Sbjct: 102 KVSEASALVILNDEPNIDHKPVISDTGNCSAPML-EMGKSNIHVQEWDWETKDILNDTTA 160
Query: 558 ANVS 569
+VS
Sbjct: 161 MDVS 164
>At5g43240.1 68418.m05284 hypothetical protein contains Pfam profile
PF05056: Protein of unknown function (DUF674)
Length = 512
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 360 DFGTKKVEQIDESSHEVSIKDCQSLLDVLNNTRN 461
D G E++DE H+V++++ +LL+ L+ + N
Sbjct: 199 DLGYVDCEKLDEKIHDVNLEEVPTLLECLSTSDN 232
>At3g55110.1 68416.m06120 ABC transporter family protein ATP-binding
cassette-sub-family G-member 2, Mus musculus,
EMBL:AF140218
Length = 708
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -1
Query: 559 ATLVSSMISETLCFPLCI*TFDRTTLAIISHV-QFRVLFNTSSKLWQSFMDTSC 401
A L++ + CF + FD T LA +SHV + ++L S L +++C
Sbjct: 606 AVLINEFDDPSRCFVKGVQVFDGTLLAEVSHVMKVKLLDTLSGSLGTKITESTC 659
>At2g13950.1 68415.m01550 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 517
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 123 LSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKPLTTKPLCDCS 290
L +Y+F A + K+HK C + P E++ P+ QL L CD S
Sbjct: 41 LGTAYYFCATCRK--KFHKECVESPLEIKHPSYPFQSLQLYSSPFALVNCICCDIS 94
>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 687
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 123 LSFSYHFLAISKMSTKYHKNCTKDPNELEDPT 218
LS SY+ A + K+HK C + P E++ PT
Sbjct: 140 LSASYY--ACLQCEKKFHKECVESPLEIKHPT 169
>At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 518
Score = 28.3 bits (60), Expect = 3.9
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +3
Query: 246 RKLKPLTTKPLCDCSNCT-CKDCPDVLKTFSINVTEDSCDFGTKKVEQI-DESSH--EVS 413
++LK + L D ++C D LK FS SCDFG K V+ + D S+ E+S
Sbjct: 133 KRLKLRACRELTDVGMAAFAENCKD-LKIFSCG----SCDFGAKGVKAVLDHCSNLEELS 187
Query: 414 IKDCQSLLDV 443
IK + D+
Sbjct: 188 IKRLRGFTDI 197
>At5g17410.2 68418.m02043 tubulin family protein similar to spindle
pole body protein [Homo
sapiens][GI:2801701][PMID:9566967], gamma-tubulin ring
protein Dgrip84 [Drosophila
melanogaster][GI:4689225][PMID: 10037793]
Length = 679
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +3
Query: 381 EQIDESSHEVSIKDCQSLLDVLNNTRNCTC-----EIIAKVVRSNVYIHRGKHKVSD 536
E++++ HE+S++ QSLLD+ T ++ V R+++ G HK +D
Sbjct: 391 EELNKKVHEISVEKLQSLLDLALRTTAAAADPRHEDLTCCVDRASLLTTLGMHKDTD 447
>At5g17410.1 68418.m02042 tubulin family protein similar to spindle
pole body protein [Homo
sapiens][GI:2801701][PMID:9566967], gamma-tubulin ring
protein Dgrip84 [Drosophila
melanogaster][GI:4689225][PMID: 10037793]
Length = 678
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +3
Query: 381 EQIDESSHEVSIKDCQSLLDVLNNTRNCTC-----EIIAKVVRSNVYIHRGKHKVSD 536
E++++ HE+S++ QSLLD+ T ++ V R+++ G HK +D
Sbjct: 390 EELNKKVHEISVEKLQSLLDLALRTTAAAADPRHEDLTCCVDRASLLTTLGMHKDTD 446
>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
Length = 1007
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +3
Query: 276 LCDCSNCTCKDCPDVLKTFSINVTEDSCDFGTKKVEQIDESSHEVSIKDCQSLLDVLNNT 455
LC CS+C D +V+ T + +C +Q +S + ++ +SLLDVLN +
Sbjct: 301 LCSCSSC---DWANVISTSKFEI--HAC-------KQYRRASQYICFENGKSLLDVLNIS 348
Query: 456 RN 461
RN
Sbjct: 349 RN 350
>At2g32240.1 68415.m03940 expressed protein contains Pfam profile:
PF04508 viral A-type inclusion protein repeat
Length = 775
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +3
Query: 69 IAKHSYYTATKDVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTR 248
+ +H + +DVLN+Q L A + + ++ +ELE +K E++
Sbjct: 611 LQEHEHIAGERDVLNEQVLQLQKELQAAQSSIDEQKQAHSQKQSELESALKKS-QEEIEA 669
Query: 249 KLKPLT 266
K K +T
Sbjct: 670 KKKAVT 675
>At1g61840.1 68414.m06978 DC1 domain-containing protein similar to
hypothetical protein GI:3184279 from [Arabidopsis
thaliana]; contains Pfam profile PF03107: DC1 domain
Length = 814
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +3
Query: 171 YHKNCTKDPNELEDPTRKQPDEQLTRKLKPLTTKPLCDCSNCTCKD 308
YHK C + P ++ P + QL+ +L P C C T D
Sbjct: 323 YHKECVQSPISIKHPYHPEHSLQLSYRL-PSAPDIECLCCGTTATD 367
>At2g30395.1 68415.m03700 expressed protein
Length = 195
Score = 27.5 bits (58), Expect = 6.8
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
Frame = +3
Query: 156 KMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKPLTTKPLCDCSNCTCKDCPDVLKTFS 335
KMS H++ + N+ +D ++ K L T P+ + + + TF
Sbjct: 72 KMSNAKHRSSSFSVND-DDYSKFMQSPLTPATAKKLFTSPITTPYSSRTRKSLNARDTFE 130
Query: 336 INVTEDSC-DFGTKKVEQIDESSHEVSIKDCQSLLDVLNNTRN 461
N ED+C F + I E + D + LL N ++
Sbjct: 131 DNAVEDACRSFENYLIHLIVEEGKIDDLMDIEELLFCWKNLKS 173
>At2g02690.1 68415.m00208 hypothetical protein
Length = 623
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 102 DVLNKQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQL 242
++ QK +Y++ + YHK C + P E+ PT + QL
Sbjct: 141 NICRVQKAGTNYYYCV--ECDVTYHKECIESPLEISYPTHAKHTLQL 185
>At5g15170.1 68418.m01777 tyrosyl-DNA phosphodiesterase-related
similar to Chain A, Crystal Structure Of Human
Tyrosyl-Dna Phosphodiesterase (Tdp1) [Homo sapiens]
GI:20150581
Length = 605
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 135 YHFLAISKMSTKYHKNCTKDPNELEDPTRK-QPDEQLTRKLKPLTTKPLCDCSNCTCKDC 311
+HF + ++ + K K +++E R P+E+L + L+ L D +N +C
Sbjct: 104 HHFFKLVLLNGRAAKKARKAEDDVEAIRRFCPPNEKLPSTFRLLSVDALPDWANTSCVSI 163
Query: 312 PDVLK 326
DV++
Sbjct: 164 NDVIE 168
>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 631
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +3
Query: 123 LSFSYHFLAISKMSTKYHKNCTKDPNELEDPTRKQPDEQLTRKLKPLTTKPLCDCS 290
L +Y+F + K+HK C + P E++ P+ QL L CD S
Sbjct: 119 LGTAYYFCTTCRK--KFHKECVESPLEIKHPSYPFQSLQLYSSPFALVNCICCDIS 172
>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 681
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 114 KQKLSFSYHFLAISKMSTKYHKNCTKDPNELEDPT 218
+ K S SY+ A + K+HK C + P E++ P+
Sbjct: 130 ESKTSRSYY--ACLECGNKFHKQCVESPLEIKHPS 162
>At1g48840.1 68414.m05468 expressed protein contains Pfam profile:
PF04842 plant protein of unknown function (DUF639)
Length = 691
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 218 GWIFEFIWVFRAIFMVFCRHFRNG*KVI*KTKLL 117
G++F +F A FMV R+F N KV+ + K++
Sbjct: 537 GYVFAIATLFIAGFMVLTRYFSNREKVMIELKVM 570
>At1g34060.1 68414.m04222 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 463
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +3
Query: 270 KPLCDCSNCTC-KDCPDVLK 326
KP C+C+NC KDC +LK
Sbjct: 68 KPPCECNNCYIGKDCSVLLK 87
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,318,956
Number of Sequences: 28952
Number of extensions: 219083
Number of successful extensions: 720
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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