Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10a04
(708 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g36170.2 68418.m04359 peptide chain release factor, putative ... 49 3e-06
At5g36170.1 68418.m04358 peptide chain release factor, putative ... 49 3e-06
At1g56350.1 68414.m06479 peptide chain release factor, putative ... 48 5e-06
At5g36170.3 68418.m04360 peptide chain release factor, putative ... 43 2e-04
At2g47020.2 68415.m05874 peptide chain release factor, putative ... 42 3e-04
At2g47020.1 68415.m05875 peptide chain release factor, putative ... 42 3e-04
At1g33330.1 68414.m04123 peptide chain release factor, putative ... 42 4e-04
At3g62910.1 68416.m07067 peptide chain release factor, putative ... 38 0.005
At1g60070.1 68414.m06767 gamma-adaptin, putative similar to gamm... 32 0.32
At1g03830.1 68414.m00364 guanylate-binding family protein contai... 31 0.57
At5g61220.1 68418.m07679 complex 1 family protein / LVR family p... 30 1.7
At2g26780.1 68415.m03212 expressed protein contains Pfam profile... 29 2.3
At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP tra... 29 3.0
At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP tra... 29 3.0
At2g39725.2 68415.m04876 complex 1 family protein / LVR family p... 29 3.0
At2g39725.1 68415.m04875 complex 1 family protein / LVR family p... 29 3.0
At5g67170.2 68418.m08468 SEC-C motif-containing protein / OTU-li... 29 4.0
At5g67170.1 68418.m08467 SEC-C motif-containing protein / OTU-li... 29 4.0
At2g42250.1 68415.m05230 cytochrome P450 family protein similar ... 29 4.0
At2g22740.2 68415.m02696 SET domain-containing protein (SUVH6) i... 27 9.2
At2g22740.1 68415.m02695 SET domain-containing protein (SUVH6) i... 27 9.2
>At5g36170.2 68418.m04359 peptide chain release factor, putative
similar to SP|P28367 Peptide chain release factor 2
(RF-2) {Bacillus subtilis}; contains Pfam profiles
PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
domain
Length = 455
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/63 (41%), Positives = 33/63 (52%)
Frame = +2
Query: 428 KINECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLI 607
+I E +L F R G GG VNK V +THIPTG ++C R Q N+ +A L
Sbjct: 312 EIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTEERSQLANKTRALIRLK 371
Query: 608 EKL 616
KL
Sbjct: 372 AKL 374
>At5g36170.1 68418.m04358 peptide chain release factor, putative
similar to SP|P28367 Peptide chain release factor 2
(RF-2) {Bacillus subtilis}; contains Pfam profiles
PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
domain
Length = 456
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/63 (41%), Positives = 33/63 (52%)
Frame = +2
Query: 428 KINECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLI 607
+I E +L F R G GG VNK V +THIPTG ++C R Q N+ +A L
Sbjct: 313 EIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRCTEERSQLANKTRALIRLK 372
Query: 608 EKL 616
KL
Sbjct: 373 AKL 375
>At1g56350.1 68414.m06479 peptide chain release factor, putative
similar to SP|P28353 Peptide chain release factor 2
(RF-2). {Salmonella typhi}; contains Pfam profiles
PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
domain
Length = 482
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/72 (33%), Positives = 34/72 (47%)
Frame = +2
Query: 410 DYSKVPKINECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKK 589
D S +IN+ +L + R G GG N + V + HIPTG C R Q N+
Sbjct: 336 DGSTRVEINDSDLRIERFRSGGAGGQHANTTDSAVRIVHIPTGITATCQNERSQHSNKAS 395
Query: 590 ARELLIEKLDDM 625
A +L +LD +
Sbjct: 396 AMAVLQSRLDQL 407
>At5g36170.3 68418.m04360 peptide chain release factor, putative
similar to SP|P28367 Peptide chain release factor 2
(RF-2) {Bacillus subtilis}; contains Pfam profiles
PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
domain
Length = 391
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +2
Query: 428 KINECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKC 553
+I E +L F R G GG VNK V +THIPTG ++C
Sbjct: 313 EIPEEDLDISFTRAGGKGGQNVNKVETAVRITHIPTGVAVRC 354
>At2g47020.2 68415.m05874 peptide chain release factor, putative
similar to peptide chain release factor 1 [Escherichia
coli] GI:147567; contains Pfam profiles PF00472:
Peptidyl-tRNA hydrolase domain, PF03462: PCRF domain
Length = 348
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/90 (30%), Positives = 41/90 (45%)
Frame = +2
Query: 347 LTSKYFRNFSPRLAAAFKHTIDYSKVPKINECELSEKFVRGSGPGGSAVNKNSNCVVLTH 526
+T K R + ++ A D V NE +L R G GG N ++ V + H
Sbjct: 177 ITEKSGRIHTSAISVAILPQADEVDVQLRNE-DLRIDTYRSGGSGGQHANTTNSAVRIIH 235
Query: 527 IPTGTVIKCHTSRCQDDNRKKARELLIEKL 616
+PTG ++ R Q NR KA ++L +L
Sbjct: 236 LPTGMMVSIQDERSQHMNRAKALKVLCARL 265
>At2g47020.1 68415.m05875 peptide chain release factor, putative
similar to peptide chain release factor 1 [Escherichia
coli] GI:147567; contains Pfam profiles PF00472:
Peptidyl-tRNA hydrolase domain, PF03462: PCRF domain
Length = 413
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/90 (30%), Positives = 41/90 (45%)
Frame = +2
Query: 347 LTSKYFRNFSPRLAAAFKHTIDYSKVPKINECELSEKFVRGSGPGGSAVNKNSNCVVLTH 526
+T K R + ++ A D V NE +L R G GG N ++ V + H
Sbjct: 242 ITEKSGRIHTSAISVAILPQADEVDVQLRNE-DLRIDTYRSGGSGGQHANTTNSAVRIIH 300
Query: 527 IPTGTVIKCHTSRCQDDNRKKARELLIEKL 616
+PTG ++ R Q NR KA ++L +L
Sbjct: 301 LPTGMMVSIQDERSQHMNRAKALKVLCARL 330
>At1g33330.1 68414.m04123 peptide chain release factor, putative
similar to peptide chain release factor 2 [Campylobacter
jejuni] GI:6469929; contains Pfam profile PF00472:
Peptidyl-tRNA hydrolase domain
Length = 257
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/54 (44%), Positives = 29/54 (53%)
Frame = +2
Query: 431 INECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKA 592
+ +C L E F R SGPGG NK + V L H+PTG V + R Q NR A
Sbjct: 95 MKQCRL-ETF-RVSGPGGQHRNKRDSAVRLKHLPTGIVAQAVEDRSQHKNRASA 146
>At3g62910.1 68416.m07067 peptide chain release factor, putative
similar to peptide chain release factor 1 [Escherichia
coli] GI:147567; contains Pfam profiles PF00472:
Peptidyl-tRNA hydrolase domain, PF03462: PCRF domain
Length = 422
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/51 (41%), Positives = 26/51 (50%)
Frame = +2
Query: 464 RGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLIEKL 616
R G GG VNK + L H P+G I C R Q N+ +A +LL KL
Sbjct: 283 RSGGAGGQNVNKVETAIDLFHKPSGIRIFCTEERTQIRNKARAFQLLRAKL 333
>At1g60070.1 68414.m06767 gamma-adaptin, putative similar to
gamma-adaptin GI:2765190 from [Homo sapiens]; contains
Pfam profiles PF01602: Adaptin N terminal region,
PF02883: Adaptin C-terminal domain
Length = 867
Score = 32.3 bits (70), Expect = 0.32
Identities = 21/67 (31%), Positives = 35/67 (52%)
Frame = +2
Query: 443 ELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLIEKLDD 622
+LSE F+ PG + + + + V++T + T I +S + RKK E L++ L D
Sbjct: 173 DLSENFIN---PGAALLKEKHHGVLITGVHLCTEICKVSSEALEYFRKKCTEGLVKTLRD 229
Query: 623 MINGPES 643
+ N P S
Sbjct: 230 IANSPYS 236
>At1g03830.1 68414.m00364 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 991
Score = 31.5 bits (68), Expect = 0.57
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +2
Query: 563 RCQDDNRKKARELLIEKLDDMINGPESVSAQRKLIEEKKYKRNATKK 703
RC + +R K+R +EK+ + +G SA +KL++ K + A++K
Sbjct: 701 RCIEIDRAKSRIEELEKVCTLNSGEGEASASKKLVDSMKMEAEASRK 747
>At5g61220.1 68418.m07679 complex 1 family protein / LVR family
protein contains Pfam PF05347: Complex 1 protein (LYR
family)
Length = 87
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 139 ITRKEVLRLYRNLLMYSKSLK-LTDPDYFRRSIKIEFKNNQNLTDLEKISFAYQKGQALL 315
++ EVL L R LL + +Y +R F+ N+NLTD K++ AY + + L
Sbjct: 2 VSSSEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFRMNKNLTDPSKVTEAYAEAKKQL 61
>At2g26780.1 68415.m03212 expressed protein contains Pfam profile TBP
(TATA-binding protein) -interacting protein 120 (TIP120);
contains TIGRFAM profile TIGR01612: reticulocyte binding
protein
Length = 1866
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 323 GQLCDMF-LLTSKYFRNFSPRLAAAFKHTIDYSKVPKINEC 442
G+LC F L + + SP A F H + +S VPK+ EC
Sbjct: 1755 GKLCSRFPSLWTDSMDDLSPSDATKFVHELFHSLVPKLLEC 1795
>At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP
transferase 9 (IPT9) identical to tRNA
isopentenyltransferase (IPT9) [Arabidopsis thaliana]
GI:14279070
Length = 459
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -1
Query: 705 CFFVAF-RLYFFSSISFLCADTLSGP 631
CFF++ R+ + SI F C D LSGP
Sbjct: 272 CFFLSSPRVALYRSIDFRCEDMLSGP 297
>At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP
transferase 9 (IPT9) identical to tRNA
isopentenyltransferase (IPT9) [Arabidopsis thaliana]
GI:14279070
Length = 463
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -1
Query: 705 CFFVAF-RLYFFSSISFLCADTLSGP 631
CFF++ R+ + SI F C D LSGP
Sbjct: 272 CFFLSSPRVALYRSIDFRCEDMLSGP 297
>At2g39725.2 68415.m04876 complex 1 family protein / LVR family
protein contains Pfam PF05347: Complex 1 protein (LYR
family)
Length = 90
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 145 RKEVLRLYRNLLMYSKSLKLTDPDYFRRSIKIEFKNNQNLTDLEKISF 288
+K+VL LYR L ++S + D + EF++N D + +
Sbjct: 10 QKQVLSLYRGFLRAARSRPIEDRKRIEMIVSTEFRHNSKEVDRKNFQY 57
>At2g39725.1 68415.m04875 complex 1 family protein / LVR family
protein contains Pfam PF05347: Complex 1 protein (LYR
family)
Length = 90
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 145 RKEVLRLYRNLLMYSKSLKLTDPDYFRRSIKIEFKNNQNLTDLEKISF 288
+K+VL LYR L ++S + D + EF++N D + +
Sbjct: 10 QKQVLSLYRGFLRAARSRPIEDRKRIEMIVSTEFRHNSKEVDRKNFQY 57
>At5g67170.2 68418.m08468 SEC-C motif-containing protein / OTU-like
cysteine protease family protein contains Pfam profiles
PF02338: OTU-like cysteine protease, PF02810: SEC-C
motif
Length = 374
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 539 TVIKCHTSRCQDDNRKKARELLIEKLDDMINGPESVSAQ-RKLIEEKKYKRNAT 697
T+ H S +N ++ARE LIE+ N E+V A+ ++KK RN T
Sbjct: 262 TINPKHASDSPMENTEQAREELIEEESASGNNSETVQAKCTTQTDDKKIPRNKT 315
>At5g67170.1 68418.m08467 SEC-C motif-containing protein / OTU-like
cysteine protease family protein contains Pfam profiles
PF02338: OTU-like cysteine protease, PF02810: SEC-C
motif
Length = 375
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 539 TVIKCHTSRCQDDNRKKARELLIEKLDDMINGPESVSAQ-RKLIEEKKYKRNAT 697
T+ H S +N ++ARE LIE+ N E+V A+ ++KK RN T
Sbjct: 263 TINPKHASDSPMENTEQAREELIEEESASGNNSETVQAKCTTQTDDKKIPRNKT 316
>At2g42250.1 68415.m05230 cytochrome P450 family protein similar to
cytochrome P450 93A1 (SP:Q42798) [Glycine max]
Length = 514
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 293 IRKVRPCCREGQLCDMFLLTSKYFRNFSPRLAAAFKHTIDYSKVPKINE 439
+ V CCREG CD+ KY N R+A + + + ++ +I E
Sbjct: 165 VDSVAKCCREGLPCDLSSQFIKYTNNVICRMAMSTRCSGTDNEAEEIRE 213
>At2g22740.2 68415.m02696 SET domain-containing protein (SUVH6)
identical to SUVH6 [Arabidopsis thaliana] GI:13517753;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain
Length = 790
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = +2
Query: 434 NECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLIEK 613
+EC SE+ V GSG S+ +N I V+ S DN + + L IE
Sbjct: 140 DECSNSEQIVAGSGVSSSSGTEN--------IVRDIVVYADESSLGMDNLDQTQPLEIEM 191
Query: 614 LDDMINGPESVSAQRK 661
D + P V+ ++K
Sbjct: 192 SDVAVAKPRLVAGRKK 207
>At2g22740.1 68415.m02695 SET domain-containing protein (SUVH6)
identical to SUVH6 [Arabidopsis thaliana] GI:13517753;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain
Length = 790
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = +2
Query: 434 NECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLIEK 613
+EC SE+ V GSG S+ +N I V+ S DN + + L IE
Sbjct: 140 DECSNSEQIVAGSGVSSSSGTEN--------IVRDIVVYADESSLGMDNLDQTQPLEIEM 191
Query: 614 LDDMINGPESVSAQRK 661
D + P V+ ++K
Sbjct: 192 SDVAVAKPRLVAGRKK 207
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,605,024
Number of Sequences: 28952
Number of extensions: 293769
Number of successful extensions: 787
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -