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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a17
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ...   241   4e-64
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ...   233   5e-62
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)           232   1e-61
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote...    34   0.090
At4g31260.1 68417.m04437 hypothetical protein                          30   1.5  
At2g31890.1 68415.m03896 expressed protein                             28   4.5  
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p...    28   4.5  
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ...    27   7.8  
At3g14840.2 68416.m01875 leucine-rich repeat family protein / pr...    27   7.8  

>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
           RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
           PIR:T45883
          Length = 166

 Score =  241 bits (589), Expect = 4e-64
 Identities = 116/163 (71%), Positives = 140/163 (85%), Gaps = 1/163 (0%)
 Frame = +1

Query: 121 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 297
           MPPK DP++I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 298 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 477
           V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DVI IAKIMR R
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 478 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 606
           S+A+ LSG+VKEILGT  SVGCTV+G+ P DL ++INSG + I
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDI 163


>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
           RIBOSOMAL PROTEIN L12, Prunus armeniaca,
           SWISSPROT:RL12_PRUAR
          Length = 166

 Score =  233 bits (571), Expect = 5e-62
 Identities = 112/165 (67%), Positives = 137/165 (83%), Gaps = 1/165 (0%)
 Frame = +1

Query: 121 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 297
           MPPK DP++I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 298 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 477
           V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV  IA+IMR R
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 478 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 612
           S+A+ LSG+V+EILGT  SVGCTV+G+ P DL  +I  G + I E
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPE 165


>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
          Length = 166

 Score =  232 bits (568), Expect = 1e-61
 Identities = 111/165 (67%), Positives = 137/165 (83%), Gaps = 1/165 (0%)
 Frame = +1

Query: 121 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 297
           MPPK DP++I  V +R  GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 298 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 477
           V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV  IA+IMR R
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 478 SMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTIDE 612
           S+A+ LSG+V+EILGT  SVGCTV+G+ P D+  +I  G + I E
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPE 165


>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 receptor type
           precursor, Oryza sativa, PIR:A57676
          Length = 1025

 Score = 33.9 bits (74), Expect = 0.090
 Identities = 19/73 (26%), Positives = 38/73 (52%)
 Frame = -2

Query: 587 LMSSIRSCGGLPSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAMPITSSREMLPLCLIF 408
           +  +I  CGG+PS +    C+V       P R+ ++   + I    + ++  +L LC+++
Sbjct: 622 VFGNINLCGGIPS-LQLQPCSVEL-----PRRHSSVRKIITICVSAVMAALLLLCLCVVY 675

Query: 407 FCFLRSRGGSLRA 369
            C+ + R  S+RA
Sbjct: 676 LCWYKLRVKSVRA 688


>At4g31260.1 68417.m04437 hypothetical protein 
          Length = 63

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 626 IRNIYSSMVKAPLLMSSIRSCGGLPSTV 543
           IR++Y   VK+ + +  IRSCGG+ ++V
Sbjct: 28  IRSLYPDKVKSEIPIQDIRSCGGVLASV 55


>At2g31890.1 68415.m03896 expressed protein
          Length = 671

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 379 EPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMA 486
           +PP+ RKKQKN K     +LED  G+   +R R +A
Sbjct: 112 QPPKKRKKQKNSK-----ALEDTEGMDWCVRARKIA 142


>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
           putative / ADP, ATP translocase, putative / adenine
           nucleotide translocase, putative strong similarity to
           SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
           chloroplast precursor (ADP/ATP translocase 1) (Adenine
           nucleotide translocase 1) {Arabidopsis thaliana};
           contains Pfam profile PF03219: TLC ATP/ADP transporter
          Length = 618

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -2

Query: 464 IFAMPITSSREMLPLCLIFFCFL 396
           IF + +T+ ++++PL L+FFC L
Sbjct: 102 IFGVEVTTLKKIVPLGLMFFCIL 124


>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
           subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
           protein GI:497629, SP:P42762 from [Arabidopsis
           thaliana]; contains Pfam profile PF02861: Clp amino
           terminal domain
          Length = 945

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 178 GEVGATSSLAPKIGPLGLSPKKVG-DDIAKATSDWKGLKITVQLTVQNR 321
           GE+   SSL P  G     P  VG DDIA   S W G+ +  Q+T   R
Sbjct: 570 GELVEESSLPPAAGDD--EPILVGPDDIAAVASVWSGIPVQ-QITADER 615


>At3g14840.2 68416.m01875 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain; contains 2 predicted transmembrane domains
          Length = 988

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
 Frame = +1

Query: 94  IKLN*VINKMPPKFD--PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKA 267
           ++ N +  K+PP+    PN  ++ N   + GE+ +T +    +  L +S  +    I   
Sbjct: 165 LEYNQLSGKIPPELGNLPNLKRLSNN--LSGEIPSTFAKLTTLTDLRISDNQFTGAIPDF 222

Query: 268 TSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 363
             +WKGL+   +L +Q     +  +PSA  L+
Sbjct: 223 IQNWKGLE---KLVIQ-ASGLVGPIPSAIGLL 250


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,423,712
Number of Sequences: 28952
Number of extensions: 302901
Number of successful extensions: 802
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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