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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a11
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR...   118   4e-27
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR...   118   4e-27
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR...   118   4e-27
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR...   116   1e-26
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR...   113   8e-26
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)...   113   8e-26
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...   107   7e-24
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein...    85   5e-17
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id...    79   2e-15
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p...    63   1e-10
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS...    62   4e-10
At2g24590.1 68415.m02936 splicing factor, putative similar to to...    61   6e-10
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l...    60   1e-09
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein              59   2e-09
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ...    59   3e-09
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat...    57   1e-08
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat...    57   1e-08
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative...    55   4e-08
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l...    55   4e-08
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l...    55   4e-08
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ...    54   7e-08
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP...    54   7e-08
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP...    54   7e-08
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP...    54   7e-08
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS...    54   1e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein...    53   2e-07
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS...    53   2e-07
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS...    53   2e-07
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)...    50   1e-06
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)...    50   1e-06
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    50   1e-06
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat...    48   4e-06
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat...    48   4e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ...    48   6e-06
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id...    48   6e-06
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ...    48   6e-06
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ...    48   8e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila...    48   8e-06
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p...    48   8e-06
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat...    47   1e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t...    46   2e-05
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)...    46   2e-05
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)...    46   2e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t...    46   3e-05
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ...    46   3e-05
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ...    45   4e-05
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ...    45   4e-05
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ...    45   4e-05
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ...    45   4e-05
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP...    45   5e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)...    45   5e-05
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ...    45   5e-05
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ...    45   5e-05
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ...    44   7e-05
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS...    44   7e-05
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33...    44   7e-05
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ...    44   9e-05
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ...    44   9e-05
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ...    44   9e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /...    44   9e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /...    44   9e-05
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ...    44   9e-05
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    44   9e-05
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ...    44   1e-04
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ...    43   2e-04
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria...    43   2e-04
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ...    43   2e-04
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ...    43   2e-04
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ...    43   2e-04
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ...    43   2e-04
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat...    43   2e-04
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein...    42   3e-04
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein...    42   3e-04
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein...    42   3e-04
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ...    42   3e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3...    42   3e-04
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to...    42   3e-04
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ...    42   5e-04
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ...    42   5e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative...    42   5e-04
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro...    42   5e-04
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative...    42   5e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ...    42   5e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ...    41   7e-04
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein...    41   7e-04
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ...    41   7e-04
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ...    41   7e-04
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t...    41   9e-04
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu...    41   9e-04
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ...    40   0.001
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ...    40   0.001
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ...    40   0.001
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein...    40   0.001
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein...    40   0.001
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat...    40   0.001
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ...    40   0.002
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t...    40   0.002
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ...    40   0.002
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ...    40   0.002
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t...    40   0.002
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id...    40   0.002
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative...    40   0.002
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t...    40   0.002
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ...    39   0.003
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ...    39   0.003
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ...    39   0.003
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ...    39   0.003
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ...    39   0.004
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t...    39   0.004
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t...    39   0.004
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ...    38   0.005
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi...    38   0.005
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)...    38   0.006
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ...    38   0.008
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ...    37   0.011
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ...    37   0.011
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ...    37   0.014
At5g51300.2 68418.m06360 splicing factor-related contains simila...    37   0.014
At5g51300.1 68418.m06359 splicing factor-related contains simila...    37   0.014
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative      37   0.014
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ...    37   0.014
At4g16280.3 68417.m02471 flowering time control protein / FCA ga...    37   0.014
At4g16280.2 68417.m02470 flowering time control protein / FCA ga...    37   0.014
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein...    37   0.014
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi...    37   0.014
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ...    36   0.019
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)       36   0.019
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil...    36   0.025
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil...    36   0.025
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil...    36   0.025
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit...    36   0.033
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit...    36   0.033
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit...    36   0.033
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ...    36   0.033
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ...    36   0.033
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ...    36   0.033
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t...    36   0.033
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit...    36   0.033
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ...    36   0.033
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ...    35   0.058
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ...    35   0.058
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ...    35   0.058
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (...    35   0.058
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ...    35   0.058
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ...    35   0.058
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t...    35   0.058
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t...    35   0.058
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ...    34   0.077
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ...    34   0.077
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    34   0.077
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil...    34   0.10 
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami...    34   0.10 
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ...    34   0.10 
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative...    34   0.10 
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ...    33   0.13 
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ...    33   0.13 
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil...    33   0.18 
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative...    33   0.18 
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ...    33   0.18 
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ...    33   0.18 
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ...    33   0.18 
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ...    33   0.18 
At3g11400.1 68416.m01390 eukaryotic translation initiation facto...    33   0.23 
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ...    33   0.23 
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    33   0.23 
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    33   0.23 
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ...    33   0.23 
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu...    32   0.41 
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu...    32   0.41 
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ...    32   0.41 
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ...    31   0.54 
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ...    31   0.54 
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative...    31   0.54 
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ...    31   0.54 
At1g47370.1 68414.m05244 Toll-Interleukin-Resistance (TIR) domai...    31   0.72 
At1g05510.1 68414.m00563 expressed protein                             31   0.72 
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu...    31   0.95 
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea...    31   0.95 
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea...    31   0.95 
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu...    31   0.95 
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu...    31   0.95 
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu...    31   0.95 
At2g31985.1 68415.m03909 expressed protein                             30   1.3  
At1g79975.2 68414.m09353 expressed protein                             30   1.3  
At1g79975.1 68414.m09352 expressed protein                             30   1.3  
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei...    30   1.7  
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei...    30   1.7  
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ...    30   1.7  
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ...    30   1.7  
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ...    30   1.7  
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s...    30   1.7  
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k...    30   1.7  
At5g45520.1 68418.m05591 hypothetical protein                          29   2.2  
At5g06000.1 68418.m00665 eukaryotic translation initiation facto...    29   2.2  
At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing ...    29   2.2  
At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein...    29   2.2  
At5g03480.1 68418.m00304 expressed protein  ; expression support...    29   2.9  
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ...    29   2.9  
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ...    29   2.9  
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t...    29   2.9  
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC...    29   3.8  
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC...    29   3.8  
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil...    29   3.8  
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ...    29   3.8  
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ...    28   5.0  
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t...    28   6.7  
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa...    27   8.8  
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa...    27   8.8  
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa...    27   8.8  
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa...    27   8.8  
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ...    27   8.8  

>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score =  118 bits (284), Expect = 4e-27
 Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 8/172 (4%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 331
           VYVG LP  +RER++E  F  +G +  I +K      GY FVEF+D RDA+DA++  +G 
Sbjct: 9   VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68

Query: 332 ELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXX--PPTRTEYRLIVENLSS 505
           +  G R+ VE A G  RS+D  R                     P  R+E+R++V  L S
Sbjct: 69  DFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPS 128

Query: 506 RISWQDLKDYMRQAGEVTYADAHKQHR-NEGVVEFATHSDMRAAIEKLDGTE 658
             SWQDLKD+MR+ G+V ++  ++  R   GVV++  + DM+ A++KLD TE
Sbjct: 129 SASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTE 180


>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 285

 Score =  118 bits (284), Expect = 4e-27
 Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 8/172 (4%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 331
           VYVG LP  +RER++E  F  +G +  I +K      GY FVEF+D RDA+DA++  +G 
Sbjct: 9   VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68

Query: 332 ELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXX--PPTRTEYRLIVENLSS 505
           +  G R+ VE A G  RS+D  R                     P  R+E+R++V  L S
Sbjct: 69  DFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPS 128

Query: 506 RISWQDLKDYMRQAGEVTYADAHKQHR-NEGVVEFATHSDMRAAIEKLDGTE 658
             SWQDLKD+MR+ G+V ++  ++  R   GVV++  + DM+ A++KLD TE
Sbjct: 129 SASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTE 180


>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score =  118 bits (284), Expect = 4e-27
 Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 8/172 (4%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 331
           VYVG LP  +RER++E  F  +G +  I +K      GY FVEF+D RDA+DA++  +G 
Sbjct: 9   VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68

Query: 332 ELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXX--PPTRTEYRLIVENLSS 505
           +  G R+ VE A G  RS+D  R                     P  R+E+R++V  L S
Sbjct: 69  DFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPS 128

Query: 506 RISWQDLKDYMRQAGEVTYADAHKQHR-NEGVVEFATHSDMRAAIEKLDGTE 658
             SWQDLKD+MR+ G+V ++  ++  R   GVV++  + DM+ A++KLD TE
Sbjct: 129 SASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTE 180


>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 178

 Score =  116 bits (279), Expect = 1e-26
 Identities = 66/168 (39%), Positives = 93/168 (55%), Gaps = 9/168 (5%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 331
           +YVG LP  +RER++E  F  +G +  I +K      GY FVEFED RDADDA+Y  +G 
Sbjct: 9   IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68

Query: 332 ELLGERVVVEPARGIDRSADRYR---RGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 502
           +  G  + VE A G  RS+   R    G                 P  R+EYR++V  L 
Sbjct: 69  DFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEYRVVVSGLP 128

Query: 503 SRISWQDLKDYMRQAGEVTYADAHKQHR-NEGVVEFATHSDMRAAIEK 643
           S  SWQDLKD+MR+ GEV ++   +  R   G+V++ ++ DM+ AI+K
Sbjct: 129 SSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYAIKK 176


>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 278

 Score =  113 bits (273), Expect = 8e-26
 Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 9/167 (5%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 331
           +YVG LP  +RER++E  F  +G +  I +K      GY FVEFED RDADDA+Y  +G 
Sbjct: 9   IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68

Query: 332 ELLGERVVVEPARGIDRSADRYR---RGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 502
           +  G  + VE A G  RS+   R    G                 P  R+EYR++V  L 
Sbjct: 69  DFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEYRVVVSGLP 128

Query: 503 SRISWQDLKDYMRQAGEVTYADAHKQHR-NEGVVEFATHSDMRAAIE 640
           S  SWQDLKD+MR+ GEV ++   +  R   G+V++ ++ DM+ A++
Sbjct: 129 SSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYALD 175


>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
           nearly identical to SF2/ASF-like splicing modulator
           Srp30 [Arabidopsis thaliana] GI:4775270
          Length = 268

 Score =  113 bits (273), Expect = 8e-26
 Identities = 70/173 (40%), Positives = 97/173 (56%), Gaps = 9/173 (5%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 331
           +YVG LP  +R+ ++E  F  +G I DI +K      GY FVEFED RDADDA+Y  +G 
Sbjct: 9   IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68

Query: 332 ELLGERVVVEPARGIDR---SADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 502
           +  G R+ VE A G  R   S DRY                    P  R++YR++V  L 
Sbjct: 69  DFDGCRLRVEIAHGGRRFSPSVDRYSSS-----------YSASRAPSRRSDYRVLVTGLP 117

Query: 503 SRISWQDLKDYMRQAGEVTYADAHKQHRN-EGVVEFATHSDMRAAIEKLDGTE 658
              SWQDLKD+MR+AG+V +++     +   GVV+++ + DM+ AI KLD TE
Sbjct: 118 PSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATE 170


>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score =  107 bits (257), Expect = 7e-24
 Identities = 70/175 (40%), Positives = 94/175 (53%), Gaps = 11/175 (6%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNG-----YGFVEFEDYRDADDAVYELNGK 331
           +YVG LP  +RE ++E  F  +GRI DI +K       Y FVEFE  RDA+DA+   +G 
Sbjct: 9   IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68

Query: 332 ELLGERVVVEPARGI--DRSADR---YRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVEN 496
            L G R+ VE A G     S+DR   Y  G                     +E+R+IV  
Sbjct: 69  NLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHSEFRVIVRG 128

Query: 497 LSSRISWQDLKDYMRQAGEVTYADAHKQHRNE-GVVEFATHSDMRAAIEKLDGTE 658
           L S  SWQDLKD+MR+AG+V +A+  +      GVV++  + DM+ AI KLD TE
Sbjct: 129 LPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLDDTE 183


>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 284

 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELL 340
           +R+YVG L    R RDLE+ F  +GR+RD+ +K  Y FVEF D RDADDA Y L+G++  
Sbjct: 11  TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFD 70

Query: 341 GERVVVEPARGIDR-SADRYRRG 406
           G R+ VE +RG  R S D   RG
Sbjct: 71  GSRITVEASRGAPRGSRDNGSRG 93



 Score = 32.3 bits (70), Expect = 0.31
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = +2

Query: 479 RLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTE 658
           RL V  LSSR   +DL+    + G V   D     R+   VEF+   D   A   LDG +
Sbjct: 12  RLYVGRLSSRTRTRDLERLFSRYGRVRDVD---MKRDYAFVEFSDPRDADDARYYLDGRD 68

Query: 659 LNGRRV 676
            +G R+
Sbjct: 69  FDGSRI 74


>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 290

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 41/83 (49%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELL 340
           +R+YVG L    R RDLE+ F  +GR+RD+ +K  Y FVEF D RDADDA + L+G++  
Sbjct: 11  TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFD 70

Query: 341 GERVVVEPARGIDR-SADRYRRG 406
           G R+ VE +RG  R S D   RG
Sbjct: 71  GSRITVEFSRGAPRGSRDFDSRG 93



 Score = 32.7 bits (71), Expect = 0.23
 Identities = 23/66 (34%), Positives = 30/66 (45%)
 Frame = +2

Query: 479 RLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTE 658
           RL V  LSSR   +DL+    + G V   D     R+   VEF    D   A   LDG +
Sbjct: 12  RLYVGRLSSRTRTRDLERLFSRYGRVRDVD---MKRDYAFVEFGDPRDADDARHYLDGRD 68

Query: 659 LNGRRV 676
            +G R+
Sbjct: 69  FDGSRI 74


>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
           putative similar to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 250

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 2/167 (1%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL-LG 343
           VYVG   +  R  DLE+ F  FGR++ + +K+GY FV FED RDA+DA+   +      G
Sbjct: 4   VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTFGYG 63

Query: 344 ER-VVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSRISWQ 520
            R + VE A+       + R G                  PT+T + +  + + +R   +
Sbjct: 64  RRKLSVEWAKDFQGERGKPRDG-----------KAVSNQRPTKTLFVINFDPIRTR--ER 110

Query: 521 DLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTEL 661
           D++ +    G+V      +  RN   V+FAT  D   A++    ++L
Sbjct: 111 DMERHFEPYGKVLNV---RMRRNFAFVQFATQEDATKALDSTHNSKL 154



 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +2

Query: 185 PFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 364
           P   RERD+E+ F+ +G++ ++ ++  + FV+F    DA  A+   +  +LL + V VE 
Sbjct: 104 PIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEY 163

Query: 365 A-RGIDRSADRY 397
           A R      DRY
Sbjct: 164 ALREAGEREDRY 175


>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
           (RSP31) identical to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 264

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 2/172 (1%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGE 346
           V+VG   +  R+ DLE+ F  +GR+  + +K+GY FV FED RDA+DA+ +L+      E
Sbjct: 4   VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYE 63

Query: 347 --RVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSRISWQ 520
             R+ VE A+G +R      RGD                 PT+T + +  + +  R    
Sbjct: 64  KRRLSVEWAKG-ERGRP---RGD---------AKAPSNLKPTKTLFVINFDPI--RTKEH 108

Query: 521 DLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRV 676
           D++ +    G+VT     +  RN   V+F T  D   A+E    +++  R V
Sbjct: 109 DIEKHFEPYGKVTNV---RIRRNFSFVQFETQEDATKALEATQRSKILDRVV 157



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 25/76 (32%), Positives = 39/76 (51%)
 Frame = +2

Query: 185 PFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 364
           P   +E D+EK F+ +G++ ++ I+  + FV+FE   DA  A+      ++L   V VE 
Sbjct: 102 PIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEY 161

Query: 365 ARGIDRSADRYRRGDR 412
           A   D   D  R G R
Sbjct: 162 ALKDDDERDD-RNGGR 176


>At2g24590.1 68415.m02936 splicing factor, putative similar to to
           RSZp22 protein [Arabidopsis thaliana]
           gi|2582645|emb|CAA05352
          Length = 196

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN---GYGFVEFEDYRDADDAVYELNGK 331
           SRVYVG L   V ER+LE  F+ FG IR + +     GY F++FED RDA DA+ E++GK
Sbjct: 2   SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGK 61

Query: 332 ELLGERVVVEPARG 373
              G RV     RG
Sbjct: 62  N--GWRVEQSHNRG 73


>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
           SR protein (SRZ22) identical to RSZp22 protein
           [Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
           SR protein [Arabidopsis thaliana] GI:3435094; contains
           Pfam profiles PF00076: RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
           identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
          Length = 200

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 40/87 (45%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN---GYGFVEFEDYRDADDAVYELNGK 331
           SRVYVG L   V ER+LE  F+ FG +R + +     GY F++FED RDA DA+  L+GK
Sbjct: 2   SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGK 61

Query: 332 ELLGERVVVEPARGIDRSADRYRRGDR 412
              G RV     RG +R     R GDR
Sbjct: 62  N--GWRVEQSHNRG-ERGGGG-RGGDR 84


>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
          Length = 310

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 12/97 (12%)
 Frame = +2

Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV 313
           GSR++VGGL   V +RDLE+ F  FG I D  I          G+GF+ F D R  D+++
Sbjct: 6   GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65

Query: 314 YELNGKELLGERVV----VEPARGIDRSADRYRRGDR 412
            E++G++  G+RV+     EP  G D       RG R
Sbjct: 66  REMHGRD-FGDRVISVNRAEPKLGRDDGESHGSRGGR 101


>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp29, putative similar to
           SP|Q43349 29 kDa ribonucleoprotein, chloroplast
           precursor (RNA-binding protein cp29) {Arabidopsis
           thaliana}
          Length = 289

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 13/186 (6%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           +++VG LPF V    L + F+  G +  + +          G+GFV      + + A  +
Sbjct: 92  KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151

Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
            NG EL G  + V       +  D + RG R                   +  R+ V NL
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211

Query: 500 SSRISWQDLKDYMRQAGEVT-----YADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELN 664
           S  +    L+    + G+V      Y     + +  G V + +  +++ AI+ LDG +L+
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271

Query: 665 GRRVRL 682
           GR++R+
Sbjct: 272 GRQIRV 277



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
 Frame = +2

Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAV 313
           G+RVYVG L +GV +  LE  F   G++        RD     G+GFV ++  ++  +A+
Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262

Query: 314 YELNGKELLGERVVVEPA 367
             L+G +L G ++ V  A
Sbjct: 263 KSLDGADLDGRQIRVSEA 280


>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 12/94 (12%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVY 316
           SR++VGGL + V ER LE  F  +G+I        RD     G+GF+ F D R ADDA+ 
Sbjct: 12  SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71

Query: 317 ELNGKELLGERVV----VEPARGIDRSADRYRRG 406
            ++G+E LG +V+     EP  G     D+ ++G
Sbjct: 72  HMHGRE-LGNKVISVNKAEPKVG-GEDVDQLKKG 103


>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
           similar to RNA binding protein(RZ-1) GI:1435061 from
           [Nicotiana sylvestris]; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 292

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 12/94 (12%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVY 316
           SR++VGGL + V ER LE  F  +G+I        RD     G+GF+ F D R ADDA+ 
Sbjct: 12  SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71

Query: 317 ELNGKELLGERVV----VEPARGIDRSADRYRRG 406
            ++G+E LG +V+     EP  G     D+ ++G
Sbjct: 72  HMHGRE-LGNKVISVNKAEPKVG-GEDVDQLKKG 103


>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GI:7673355 from [Nicotiana tabacum]; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 620

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 16/186 (8%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI-RDILIKN------GYGFVEFEDYRDADDAVYELN 325
           ++V  LP+  +  ++  FFK  G + R  LI N      G GFVEF    +A++A+ + N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188

Query: 326 GKELLGERVVVEPA-RGIDRSADRY----RRGDRHXXXXXXXXXXXXXXPPTRTEYRLIV 490
           G+ L   ++ ++ A +       +Y    +  D+               PP   E  L V
Sbjct: 189 GECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLESHPIEEDERPPNSVEEVLFV 248

Query: 491 ENLSSRISWQDLKDYMRQAGEVT----YADAHKQHRNEGVVEFATHSDMRAAIEKLDGTE 658
            NLS +    D+ D+    GEV       +   +H   G VEFA+  + + A+E  +G  
Sbjct: 249 ANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKNGEY 308

Query: 659 LNGRRV 676
           L+  ++
Sbjct: 309 LHDHKI 314



 Score = 36.7 bits (81), Expect = 0.014
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = +2

Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNE----GVVEFATHSDMRAAIEKLD 649
           L V NLS R     +  + +   EV        HR E    G VEFA+ ++ + A++K++
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550

Query: 650 GTELNGRRVRL 682
           G  L  R + L
Sbjct: 551 GENLRSREIFL 561



 Score = 31.5 bits (68), Expect = 0.54
 Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 17/189 (8%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN------GYGFVEFEDYRDADDAVYELN 325
           ++V  L    +  D+  FF   G +  I L+ N      GYGFVEF    +   A+   N
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKN 305

Query: 326 GKELLGERVVVEPARGI----DRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVE 493
           G+ L   ++ ++ A+        + + Y R +                   R +  L V 
Sbjct: 306 GEYLHDHKIFIDVAKTAPYPPGPNYEDYLRRESLPIDEDETPPEFVEAVGVRKK-TLFVA 364

Query: 494 NLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGV----VEF--ATHSDMRAAIEKLDGT 655
           +LS +     + ++ +  GEV +      H  + V    VEF  A  + M  A+E  +G 
Sbjct: 365 HLSRKTEITHIINFFKDVGEVVHVRLILNHTGKHVGCAFVEFGSANEAKMVRALETKNGE 424

Query: 656 ELNGRRVRL 682
            LN  ++ L
Sbjct: 425 YLNDCKIFL 433



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI-RDILIKN------GYGFVEFEDYRDADDAVYELN 325
           ++V  L    +   + KFFK    + R  LI N      G GFVEF    +A  A+ ++N
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550

Query: 326 GKELLGERVVVE 361
           G+ L    + ++
Sbjct: 551 GENLRSREIFLD 562


>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN---GYGFVEFEDYRDADDAVYELNGK 331
           +RVYVG L   V ER+LE  FK FG +R++ +     GY F+EF+D RDA DA+  L+ K
Sbjct: 2   TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK 61

Query: 332 ELLGERVVVEPARGIDRSADRYRRG 406
              G RV +       R     RRG
Sbjct: 62  N--GWRVELSHKDKGGRGGGGGRRG 84


>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
           SR protein (SRZ21) nearly identical to 9G8-like splicing
           factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
           protein [Arabidopsis thaliana] GI:2582643
          Length = 187

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN---GYGFVEFEDYRDADDAVYELNGK 331
           +RVYVG L   V ER+LE  FK FG +R++ +     GY F+EF+D RDA DA+  L+ K
Sbjct: 2   TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK 61

Query: 332 ELLGERVVVEPARGIDRSADRYRRG 406
              G RV +       R     RRG
Sbjct: 62  N--GWRVELSHKDKGGRGGGGGRRG 84


>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
           protein low similarity to glycine-rich RNA-binding
           protein [Euphorbia esula] GI:2645699; contains
           INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) domain
          Length = 337

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
 Frame = +2

Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNG-------YGFVEFEDYRDADDAVY 316
           G+ VYVGGLP+ + E  + + F  +G +  + I N        YGFV F + R ADDA+ 
Sbjct: 6   GNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIE 65

Query: 317 ELNGKELLGERVVV 358
           +++GK + G  V V
Sbjct: 66  DMDGKSIGGRAVRV 79


>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 92

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 319
           R +VGGL +   + DL++ F  FG + D  I N        G+GFV F+D +   DA+ E
Sbjct: 7   RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66

Query: 320 LNGKELLGERVVVEPAR 370
           +NGKEL G  + V  A+
Sbjct: 67  MNGKELDGRVITVNEAQ 83



 Score = 34.7 bits (76), Expect = 0.058
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +2

Query: 464 TRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYA----DAHK-QHRNEGVVEFATHSDMR 628
           +  EYR  V  L+   + +DL+    Q G+V  +    D    + R  G V F     MR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 629 AAIEKLDGTELNGR 670
            AIE+++G EL+GR
Sbjct: 62  DAIEEMNGKELDGR 75


>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 126

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 319
           R +VGGL +   + DL++ F  FG + D  I N        G+GFV F+D +   DA+ E
Sbjct: 7   RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66

Query: 320 LNGKELLGERVVVEPAR 370
           +NGKEL G  + V  A+
Sbjct: 67  MNGKELDGRVITVNEAQ 83



 Score = 34.7 bits (76), Expect = 0.058
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +2

Query: 464 TRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYA----DAHK-QHRNEGVVEFATHSDMR 628
           +  EYR  V  L+   + +DL+    Q G+V  +    D    + R  G V F     MR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 629 AAIEKLDGTELNGR 670
            AIE+++G EL+GR
Sbjct: 62  DAIEEMNGKELDGR 75


>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 169

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 319
           R +VGGL +   + DL++ F  FG + D  I N        G+GFV F+D +   DA+ E
Sbjct: 7   RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66

Query: 320 LNGKELLGERVVVEPAR 370
           +NGKEL G  + V  A+
Sbjct: 67  MNGKELDGRVITVNEAQ 83



 Score = 34.7 bits (76), Expect = 0.058
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +2

Query: 464 TRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYA----DAHK-QHRNEGVVEFATHSDMR 628
           +  EYR  V  L+   + +DL+    Q G+V  +    D    + R  G V F     MR
Sbjct: 2   SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61

Query: 629 AAIEKLDGTELNGR 670
            AIE+++G EL+GR
Sbjct: 62  DAIEEMNGKELDGR 75


>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
           (RSP40) identical to SP|P92965 Arginine/serine-rich
           splicing factor RSP40 {Arabidopsis thaliana}
          Length = 350

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 340
           V+ G   +  RE DLE+ F+ +G++  + +K G+ FV  ED RDA+DA+  L+  E    
Sbjct: 4   VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63

Query: 341 GERVVVEPARGIDRSADRYRRG 406
           G R+ VE  +  +R  D+   G
Sbjct: 64  GRRLRVEWTKS-ERGGDKRSGG 84



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
 Frame = +2

Query: 197 RERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE----- 361
           R RDLEK F+ +G+I ++ I+  + F+++E   DA  A+   N  +L+ + + VE     
Sbjct: 110 RTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKD 169

Query: 362 -PARGIDRSADRYR 400
             ARG   S +R R
Sbjct: 170 DDARGNGHSPERRR 183


>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 243

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 27/52 (51%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
 Frame = +2

Query: 254 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDR-SADRYRRG 406
           +K  Y FVEF D RDADDA Y L+G++  G R+ VE +RG  R S D   RG
Sbjct: 1   MKRDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRGAPRGSRDNGSRG 52


>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
           (RSP41) nearly identical to SP|P92966
           Arginine/serine-rich splicing factor RSP41 {Arabidopsis
           thaliana}
          Length = 357

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 340
           V+ G   +  RE DLE+ F+ +G++  + +K G+ FV  ED RDA+DA+  L+  E    
Sbjct: 4   VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63

Query: 341 GERVVVE 361
           G R+ VE
Sbjct: 64  GRRLRVE 70



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 14/83 (16%)
 Frame = +2

Query: 197 RERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE----- 361
           R RDLE+ F+ +G+I ++ I+  + F+++E   DA  A+   N  +L+ + + VE     
Sbjct: 109 RTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKD 168

Query: 362 ---------PARGIDRSADRYRR 403
                    P R  DRS DR RR
Sbjct: 169 DDSRGNGYSPERRRDRSPDRRRR 191


>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
           (RSP41) nearly identical to SP|P92966
           Arginine/serine-rich splicing factor RSP41 {Arabidopsis
           thaliana}
          Length = 356

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL--L 340
           V+ G   +  RE DLE+ F+ +G++  + +K G+ FV  ED RDA+DA+  L+  E    
Sbjct: 4   VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63

Query: 341 GERVVVE 361
           G R+ VE
Sbjct: 64  GRRLRVE 70



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 14/83 (16%)
 Frame = +2

Query: 197 RERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE----- 361
           R RDLE+ F+ +G+I ++ I+  + F+++E   DA  A+   N  +L+ + + VE     
Sbjct: 109 RTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKD 168

Query: 362 ---------PARGIDRSADRYRR 403
                    P R  DRS DR RR
Sbjct: 169 DDSRGNGYSPERRRDRSPDRRRR 191


>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
           glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
           thaliana] GI:2826811
          Length = 153

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
 Frame = +2

Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 304
           +++ +++++GGL +G  +  L   F  FG + D  +          G+GFV F D   A 
Sbjct: 31  RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90

Query: 305 DAVYELNGKELLGERVVVEPA 367
            A+ E++GKEL G  + V PA
Sbjct: 91  AAISEMDGKELNGRHIRVNPA 111



 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 584 RNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
           R  G V F       AAI ++DG ELNGR +R+
Sbjct: 76  RGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108


>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
           glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
           thaliana] GI:2826811
          Length = 158

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
 Frame = +2

Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 304
           +++ +++++GGL +G  +  L   F  FG + D  +          G+GFV F D   A 
Sbjct: 31  RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90

Query: 305 DAVYELNGKELLGERVVVEPA 367
            A+ E++GKEL G  + V PA
Sbjct: 91  AAISEMDGKELNGRHIRVNPA 111



 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 584 RNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
           R  G V F       AAI ++DG ELNGR +R+
Sbjct: 76  RGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108


>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 10/94 (10%)
 Frame = +2

Query: 158 GSR-VYVGGLPFGVRERDLEKFFKGFGRIRDILIKN-------GYGFVEFEDYRDADDAV 313
           GS+ ++ G L + +   D+E FFK  G + D+ + +       GYG +EF    +A  A+
Sbjct: 382 GSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKAL 441

Query: 314 YELNGKELLGERVVVEPA--RGIDRSADRYRRGD 409
            E+NGK LLG  V ++ A  RG  R+++  R+G+
Sbjct: 442 -EMNGKLLLGRDVRLDLANERGTPRNSNPGRKGE 474



 Score = 35.1 bits (77), Expect = 0.044
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
 Frame = +2

Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHK----QHRNEGVVEFATHSDMRAAIEKLD 649
           L   NLS +I+  D++++ ++AGEV             +  G +EFA+  + + A+E ++
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALE-MN 444

Query: 650 GTELNGRRVRL 682
           G  L GR VRL
Sbjct: 445 GKLLLGRDVRL 455


>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana]; contains Pfam profile: PF00076
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 136

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
 Frame = +2

Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 304
           + + S+++VGGL +G  +  L++ F  FG + +  +          G+GFV F     A+
Sbjct: 31  RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90

Query: 305 DAVYELNGKELLGERVVVEPA 367
           +A+ E++GKEL G ++ V  A
Sbjct: 91  NAIKEMDGKELNGRQIRVNLA 111



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = +2

Query: 479 RLIVENLSSRISWQDLKDYMRQAGEVTYAD--AHKQ---HRNEGVVEFATHSDMRAAIEK 643
           +L V  LS       LK      GEVT A   A ++    R  G V F+       AI++
Sbjct: 36  KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95

Query: 644 LDGTELNGRRVRL 682
           +DG ELNGR++R+
Sbjct: 96  MDGKELNGRQIRV 108


>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana]; contains Pfam profile: PF00076
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 136

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
 Frame = +2

Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 304
           + + S+++VGGL +G  +  L++ F  FG + +  +          G+GFV F     A+
Sbjct: 31  RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90

Query: 305 DAVYELNGKELLGERVVVEPA 367
           +A+ E++GKEL G ++ V  A
Sbjct: 91  NAIKEMDGKELNGRQIRVNLA 111



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = +2

Query: 479 RLIVENLSSRISWQDLKDYMRQAGEVTYAD--AHKQ---HRNEGVVEFATHSDMRAAIEK 643
           +L V  LS       LK      GEVT A   A ++    R  G V F+       AI++
Sbjct: 36  KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95

Query: 644 LDGTELNGRRVRL 682
           +DG ELNGR++R+
Sbjct: 96  MDGKELNGRQIRV 108


>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 352

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYEL 322
           VYVGG+PF + E DL   F  +G I D+ LI++       G+ F+ +ED R    AV  L
Sbjct: 38  VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97

Query: 323 NGKELLGERVVVE 361
           NG  +LG  + V+
Sbjct: 98  NGALVLGRTIKVD 110


>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 249

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
 Frame = +2

Query: 254 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDR-SADRYRRG 406
           +K  Y FVEF D RDADDA + L+G++  G R+ VE +RG  R S D   RG
Sbjct: 1   MKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRG 52


>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp29, putative similar to
           29 kDa ribonucleoprotein chloroplast precursor
           {Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) contains an AG-donor site at
           intron.
          Length = 258

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 13/189 (6%)
 Frame = +2

Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDA 310
           V +++Y G LP+ V    L +  + F           RD     G+ FV   +  D +  
Sbjct: 83  VNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNII 142

Query: 311 VYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIV 490
           +  L+G E LG  + V         AD+ +                       TE++L V
Sbjct: 143 IDNLDGTEYLGRALKVN-------FADKPKPNKEPLYP--------------ETEHKLFV 181

Query: 491 ENLSSRISWQDLKDYMRQAGEVTYA----DAHK-QHRNEGVVEFATHSDMRAAIEKLDGT 655
            NLS  ++ + L    R+ G+V  A    D    + R  G V +++ ++M  A+E LDG 
Sbjct: 182 GNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGF 241

Query: 656 ELNGRRVRL 682
           EL GR +R+
Sbjct: 242 ELEGRAIRV 250



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           +++VG L + V    L   F+  G +    +          GYGFV +    + + A+  
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237

Query: 320 LNGKELLGERVVVEPARG 373
           L+G EL G  + V  A+G
Sbjct: 238 LDGFELEGRAIRVNLAQG 255


>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           chloroplast RNA-binding protein (cp33) GB:BAA06523
           (Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
           (1995)); contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 329

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 16/189 (8%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           R+YVG LP+ +   +L + F   G + D+ I          G+GFV      +A +A+  
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176

Query: 320 LNGKELLGERVVV---EPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIV 490
            N  ++ G  V V   E  RG +    R +  D +                  + +++  
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSY-------------VDSPHKVYA 223

Query: 491 ENLSSRISWQDLKD-YMRQAG----EVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGT 655
            NL   ++ Q LKD +  Q G    +V Y     + R  G + F +  ++++A+  ++G 
Sbjct: 224 GNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGV 283

Query: 656 ELNGRRVRL 682
           E+ GR +RL
Sbjct: 284 EVEGRALRL 292


>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
           to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
           sylvestris]; contains Pfam profile: PF00076 RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 245

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           R ++GGL +   +R L   F+ +G + +  +          G+GF+ F++ +  D+A+  
Sbjct: 8   RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67

Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDR 412
           +NG +L G  + V+ A+     A R   GDR
Sbjct: 68  MNGMDLDGRTITVDKAQPHQGGAGRDNDGDR 98


>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
           putative similar to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 224

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +2

Query: 185 PFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 364
           P   RERD+E+ F+ +G++ ++ ++  + FV+F    DA  A+   +  +LL + V VE 
Sbjct: 78  PIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEY 137

Query: 365 A-RGIDRSADRY 397
           A R      DRY
Sbjct: 138 ALREAGEREDRY 149



 Score = 34.3 bits (75), Expect = 0.077
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 2/138 (1%)
 Frame = +2

Query: 254 IKNGYGFVEFEDYRDADDAVYELNGKEL-LGER-VVVEPARGIDRSADRYRRGDRHXXXX 427
           I  GY FV FED RDA+DA+   +      G R + VE A+       + R G       
Sbjct: 7   IDAGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDG------- 59

Query: 428 XXXXXXXXXXPPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEF 607
                      PT+T + +  + + +R   +D++ +    G+V      +  RN   V+F
Sbjct: 60  ----KAVSNQRPTKTLFVINFDPIRTR--ERDMERHFEPYGKVLNV---RMRRNFAFVQF 110

Query: 608 ATHSDMRAAIEKLDGTEL 661
           AT  D   A++    ++L
Sbjct: 111 ATQEDATKALDSTHNSKL 128


>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein 2,
           mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
           [Arabidopsis thaliana] ; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 87

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
 Frame = +2

Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 310
           + +RVYVG L     +  L + F G+G + D ++          G+GFV +  + +A+ A
Sbjct: 1   MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60

Query: 311 VYELNGKELLGERVVVE 361
           V  ++GKEL G RV V+
Sbjct: 61  VSGMDGKELNGRRVSVK 77



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = +2

Query: 479 RLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQH-----RNEGVVEFATHSDMRAAIEK 643
           R+ V NLS   +   L++     G V  A   +       R  G V +++HS+  AA+  
Sbjct: 4   RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63

Query: 644 LDGTELNGRRV 676
           +DG ELNGRRV
Sbjct: 64  MDGKELNGRRV 74


>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
           RNA Binding Protein 47 [Nicotiana plumbaginifolia]
           GI:9663769, DNA binding protein ACBF GB:AAC49850 from
           [Nicotiana tabacum]; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 435

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNGKELL 340
           ++VGG+   V + DL + F  FG +  + I    G GFV+F D + A+DA+  LNG  ++
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNG-TVI 381

Query: 341 GERVVVEPARGIDRSADRYRRGD 409
           G+  V        RS ++  RGD
Sbjct: 382 GKNTV---RLSWGRSPNKQWRGD 401



 Score = 35.9 bits (79), Expect = 0.025
 Identities = 37/147 (25%), Positives = 53/147 (36%), Gaps = 7/147 (4%)
 Frame = +2

Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERV---VVEPARGI----DRSADRYRRGDRHXX 421
           GYGFV F D  +   A+ E+NG      ++   +  P R I      S+        H  
Sbjct: 245 GYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGS 304

Query: 422 XXXXXXXXXXXXPPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVV 601
                         T     + V  +   +  +DL+    Q GEV         +  G V
Sbjct: 305 NGSMGYGSQSDGESTNAT--IFVGGIDPDVIDEDLRQPFSQFGEVVSVKI-PVGKGCGFV 361

Query: 602 EFATHSDMRAAIEKLDGTELNGRRVRL 682
           +FA       AIE L+GT +    VRL
Sbjct: 362 QFADRKSAEDAIESLNGTVIGKNTVRL 388


>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
           SP|Q03250 Glycine-rich RNA-binding protein 7
           {Arabidopsis thaliana}
          Length = 159

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 319
           R +VGGL +   +R LE  F  +G + D  I N        G+GFV F+D +   DA+  
Sbjct: 9   RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68

Query: 320 LNGKELLGERVVVEPAR 370
           +NG++L G  + V  A+
Sbjct: 69  MNGQDLDGRSITVNEAQ 85



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
 Frame = +2

Query: 473 EYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQH-----RNEGVVEFATHSDMRAAI 637
           EYR  V  L+     + L+    Q G+V  +           R  G V F     M+ AI
Sbjct: 7   EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66

Query: 638 EKLDGTELNGRRV 676
           E ++G +L+GR +
Sbjct: 67  EGMNGQDLDGRSI 79


>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
           SP|Q03250 Glycine-rich RNA-binding protein 7
           {Arabidopsis thaliana}
          Length = 176

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 319
           R +VGGL +   +R LE  F  +G + D  I N        G+GFV F+D +   DA+  
Sbjct: 9   RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68

Query: 320 LNGKELLGERVVVEPAR 370
           +NG++L G  + V  A+
Sbjct: 69  MNGQDLDGRSITVNEAQ 85



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
 Frame = +2

Query: 473 EYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQH-----RNEGVVEFATHSDMRAAI 637
           EYR  V  L+     + L+    Q G+V  +           R  G V F     M+ AI
Sbjct: 7   EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66

Query: 638 EKLDGTELNGRRV 676
           E ++G +L+GR +
Sbjct: 67  EGMNGQDLDGRSI 79


>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
           RNA-binding protein from [Nicotiana tabacum]
           GI:15822703, [Nicotiana sylvestris] GI:624925; contains
           Pfam profile: PF00076 RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 143

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
 Frame = +2

Query: 98  SITC*FNFES*FIIVYWKMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI------- 256
           SI+  F+F   F         S++++GGL + V E+ L+  F  FG + ++ I       
Sbjct: 20  SISSSFHFLPQFCTSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSG 79

Query: 257 -KNGYGFVEFEDYRDADDAVYELNGKELLG 343
              G+GFV+F +  DA  A   ++GK LLG
Sbjct: 80  RSRGFGFVDFAEEGDALSAKDAMDGKGLLG 109



 Score = 36.3 bits (80), Expect = 0.019
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = +2

Query: 479 RLIVENLSSRISWQDLKDYMRQAGEVT-----YADAHKQHRNEGVVEFATHSDMRAAIEK 643
           +L +  LS  +  Q LKD     GEV      Y     + R  G V+FA   D  +A + 
Sbjct: 42  KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101

Query: 644 LDGTELNGRRVRL 682
           +DG  L GR +R+
Sbjct: 102 MDGKGLLGRPLRI 114


>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein ACBF GB:U90212 GI:1899187
           from [Nicotiana tabacum]
          Length = 445

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNGKE 334
           S ++VGGL   V E DL + F  FG +  + I    G GFV+F + + A++A+  LNG  
Sbjct: 327 STIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNG-T 385

Query: 335 LLGERVV 355
           ++G+  V
Sbjct: 386 VIGKNTV 392



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 34/140 (24%), Positives = 51/140 (36%)
 Frame = +2

Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXX 442
           GYGFV F D  +   A+ E+NG      ++ V  A     +A   + G +          
Sbjct: 256 GYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGG 315

Query: 443 XXXXXPPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSD 622
                        + V  L + ++ +DL       GEV         +  G V+FA    
Sbjct: 316 NGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI-PVGKGCGFVQFANRQS 374

Query: 623 MRAAIEKLDGTELNGRRVRL 682
              AI  L+GT +    VRL
Sbjct: 375 AEEAIGNLNGTVIGKNTVRL 394


>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
           protein Mei2-like protein, Arabidopsis thaliana,
           gb:D86122
          Length = 785

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
 Frame = +2

Query: 194 VRERDLEKFFKGFGRIRDILI---KNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 364
           V  RDLE  F  +G I++I     K  + FVEF D R AD A+  LN  E+ G+R+ +E 
Sbjct: 233 VSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEIAGKRIKLEH 292

Query: 365 AR 370
           +R
Sbjct: 293 SR 294



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 21/67 (31%), Positives = 36/67 (53%)
 Frame = +2

Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTEL 661
           L+V NL+  +S +DL++     GE+         R+   VEF       AA++ L+ TE+
Sbjct: 224 LVVFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEI 283

Query: 662 NGRRVRL 682
            G+R++L
Sbjct: 284 AGKRIKL 290


>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
           protein
          Length = 561

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 12/173 (6%)
 Frame = +2

Query: 200 ERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYELNGKELLGERVV 355
           ERD+ +FF   G++RD+ I          G G+VEF D      A+  L+G+ LLG+ V+
Sbjct: 195 ERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-ALSGQPLLGQPVM 253

Query: 356 VEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSRISWQDLKDY 535
           V+P+      A++    +                P +    RL V NL   +S  DL+  
Sbjct: 254 VKPS-----EAEK----NLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKV 304

Query: 536 MRQAGEVTYADAHKQH----RNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
               G V      +      +  G V+FA   D R A+      E+ GR +++
Sbjct: 305 FESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKV 357



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIK-------NGYGFVEFEDYRDADDAVYEL 322
           R+YVG L   + E DL K F+ FG +  + +         G+GFV+F    DA +A+  L
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NL 344

Query: 323 NGK-ELLGERVVV 358
           NG+ E+ G  + V
Sbjct: 345 NGQLEIAGRAIKV 357


>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 434

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
 Frame = +2

Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNG 328
           + + ++VGGL   V + DL++ F  FG I  + I    G GFV+F +  +A++A+ +LNG
Sbjct: 304 INTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNG 363

Query: 329 KELLGERVV 355
             ++G++ V
Sbjct: 364 -TVIGKQTV 371



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 36/140 (25%), Positives = 59/140 (42%)
 Frame = +2

Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXX 442
           GYGFV F D  +   A+ E+NG +     + + PA    R  + Y++   +         
Sbjct: 242 GYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPA--TPRKTNGYQQQGGYMPSGAFTRS 299

Query: 443 XXXXXPPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSD 622
                  T     + V  L S ++ +DLK    + GE+         +  G V+F    +
Sbjct: 300 EGDTINTT-----IFVGGLDSSVTDEDLKQPFSEFGEIVSVKI-PVGKGCGFVQFVNRPN 353

Query: 623 MRAAIEKLDGTELNGRRVRL 682
              A+EKL+GT +  + VRL
Sbjct: 354 AEEALEKLNGTVIGKQTVRL 373



 Score = 31.5 bits (68), Expect = 0.54
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 263 GYGFVEFEDYRDADDAVYELNG 328
           GYGFVEFE +  AD  + E NG
Sbjct: 147 GYGFVEFESHDVADKVLQEFNG 168


>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 432

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 36/140 (25%), Positives = 59/140 (42%)
 Frame = +2

Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXX 442
           GYGFV F D  +   A+ E+NG +     + + PA    R  + Y++   +         
Sbjct: 240 GYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPA--TPRKTNGYQQQGGYMPNGTLTRP 297

Query: 443 XXXXXPPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSD 622
                  T     + V  L S ++ +DLK    + GE+         +  G V+F    +
Sbjct: 298 EGDIMNTT-----IFVGGLDSSVTDEDLKQPFNEFGEIVSVKI-PVGKGCGFVQFVNRPN 351

Query: 623 MRAAIEKLDGTELNGRRVRL 682
              A+EKL+GT +  + VRL
Sbjct: 352 AEEALEKLNGTVIGKQTVRL 371



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
 Frame = +2

Query: 152 MVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELN 325
           ++ + ++VGGL   V + DL++ F  FG I  + I    G GFV+F +  +A++A+ +LN
Sbjct: 301 IMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLN 360

Query: 326 GKELLGERVV 355
           G  ++G++ V
Sbjct: 361 G-TVIGKQTV 369



 Score = 31.9 bits (69), Expect = 0.41
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 254 IKNGYGFVEFEDYRDADDAVYELNG 328
           +  GYGFVEFE +  AD  + E NG
Sbjct: 142 LSEGYGFVEFESHDVADKVLREFNG 166


>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
           (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
           (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
           contains a non-consensus CG acceptor splice site at
           intron 2
          Length = 105

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 319
           R +VGGL +   + DL++ F  FG + D  I N        G+GFV F+D +   DA+ E
Sbjct: 7   RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66

Query: 320 LNG 328
           +NG
Sbjct: 67  MNG 69


>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
           non-consensus TA donor splice site at exon 2,
           polyadenylate-binding protein - Triticum aestivum
           (common wheat),PIR:T06979
          Length = 443

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 11/181 (6%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYE 319
           + VYV  L     + DL+  F  +G+I   ++         G+GFV FE+  DA  AV  
Sbjct: 29  TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 88

Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
           LNG +   +   V  A+         ++ +R                       L V+NL
Sbjct: 89  LNGHKFDDKEWYVGRAQ---------KKSERETELRVRYEQNLKEAADKFQSSNLYVKNL 139

Query: 500 SSRISWQDLKDYMRQAGEVTYA----DAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNG 667
              IS + LK+     G VT +    D +   +  G V FAT  +   A+ +L G  +  
Sbjct: 140 DPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIES 199

Query: 668 R 670
           +
Sbjct: 200 K 200



 Score = 31.1 bits (67), Expect = 0.72
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
 Frame = +2

Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADD 307
           K   S +YV  L   + +  L++ F  FG +    +         G GFV F    +A +
Sbjct: 128 KFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATE 187

Query: 308 AVYELNGKELLGERVVVEPAR 370
           A+ +L+GK +  + + V  A+
Sbjct: 188 AMSQLSGKMIESKPLYVAIAQ 208


>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 823

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNG--YGFVEFEDYRDADDAVYELNGKELL 340
           ++VG LP G+ ER+L   F  FG +  +  + G  Y FV F    DA  A+  L G  L 
Sbjct: 25  LWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQGFPLS 84

Query: 341 GERVVVEPARGIDRSADRYRRGD 409
           G  + +E A+  ++S+   R  D
Sbjct: 85  GNPLRIEFAKA-EKSSTGSRTDD 106


>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein [Nicotiana
           plumbaginifolia] GI:6996560; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 419

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNGYGFVEFEDYRDADDAVYELNGKE 334
           VYVG +   V E  L++ F G G +    +    K+ YGFV + D R A  A+  LNG+ 
Sbjct: 56  VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRH 115

Query: 335 LLGERVVV 358
           L G+ + V
Sbjct: 116 LFGQPIKV 123


>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
           similarity to RNA-binding protein from [Nicotiana
           tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
           [Solanum tuberosum] GI:15822705; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 146

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
 Frame = +2

Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 310
           V S++++GGL F   E+ L + F   G++ +  I          G+GFV F    +A  A
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 311 VYELNGKELLGERVVVEPAR 370
           + E NG++L G  + V+ A+
Sbjct: 92  LMEFNGQQLNGRTIFVDYAK 111


>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
           (RSP40) identical to SP|P92965 Arginine/serine-rich
           splicing factor RSP40 {Arabidopsis thaliana}
          Length = 309

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
 Frame = +2

Query: 197 RERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVE----- 361
           R RDLEK F+ +G+I ++ I+  + F+++E   DA  A+   N  +L+ + + VE     
Sbjct: 69  RTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKD 128

Query: 362 -PARGIDRSADRYR 400
             ARG   S +R R
Sbjct: 129 DDARGNGHSPERRR 142


>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
           nearly identical to SC35-like splicing factor SCL33, 33
           kD [Arabidopsis thaliana] GI:9843659
          Length = 220

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
 Frame = +2

Query: 173 VGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYELNG 328
           V  L    R+ DL K F+ FG ++DI +          G+GFV+F D  DA DA + ++G
Sbjct: 40  VRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDG 99

Query: 329 KELLGERVVV 358
             LLG  + V
Sbjct: 100 YLLLGRELTV 109


>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
           protein similar to DAZ associated protein 1 [Homo
           sapiens] GI:8671754; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 460

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           +++VGGLP  + E + + +F  FG I D+++          G+GF+ F D  DA D V  
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLH 169

Query: 320 LNGKELLGERVVVEPA 367
               EL G+ V V+ A
Sbjct: 170 KTFHELNGKLVEVKRA 185


>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
           protein similar to DAZ associated protein 1 [Homo
           sapiens] GI:8671754; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 460

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           +++VGGLP  + E + + +F  FG I D+++          G+GF+ F D  DA D V  
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLH 169

Query: 320 LNGKELLGERVVVEPA 367
               EL G+ V V+ A
Sbjct: 170 KTFHELNGKLVEVKRA 185


>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
           protein similar to DAZ associated protein 1 [Homo
           sapiens] GI:8671754; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 448

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           +++VGGLP  + E + + +F  FG I D+++          G+GF+ F D  DA D V  
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITF-DSDDAVDRVLH 169

Query: 320 LNGKELLGERVVVEPA 367
               EL G+ V V+ A
Sbjct: 170 KTFHELNGKLVEVKRA 185


>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 334

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
 Frame = +2

Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAV 313
           G+R+YVG L +GV +  LE  F   G++        RD     G+GFV     ++   A+
Sbjct: 248 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 307

Query: 314 YELNGKELLGERVVVEPA 367
             LNG +L G ++ V  A
Sbjct: 308 NSLNGADLDGRQIRVSEA 325



 Score = 33.5 bits (73), Expect = 0.13
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           +++VG L F V    L + F+  G +  + +          G+GFV      + + A  +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159

Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDR 412
            NG E  G  + V       +  + + RG R
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190


>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 342

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
 Frame = +2

Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAV 313
           G+R+YVG L +GV +  LE  F   G++        RD     G+GFV     ++   A+
Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 315

Query: 314 YELNGKELLGERVVVEPA 367
             LNG +L G ++ V  A
Sbjct: 316 NSLNGADLDGRQIRVSEA 333



 Score = 33.5 bits (73), Expect = 0.13
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           +++VG L F V    L + F+  G +  + +          G+GFV      + + A  +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159

Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDR 412
            NG E  G  + V       +  + + RG R
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190


>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 430

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 4/175 (2%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNGYGFVEFEDYRDADDAVYELNGKE 334
           VY G +   V E  L++ F   G I    +    K+ YGFV + D R A  A+  LNG+ 
Sbjct: 65  VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124

Query: 335 LLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSRIS 514
           + G+ + V  A         Y  G R               P   T+  L      S  +
Sbjct: 125 IFGQPMKVNWA---------YATGQREDTSSHFNIFVGDLSPEV-TDAAL----FDSFSA 170

Query: 515 WQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVR 679
           +     Y R A  V +     + R  G V F    D + AI +++G  ++ R++R
Sbjct: 171 FNSCSSYYRDA-RVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIR 224


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
 Frame = +2

Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV 313
           G+ +YV GL   V ERDLE  F   G++ D+ +          G+GF+  +   DA+  +
Sbjct: 74  GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 133

Query: 314 YELNGKELLGERVVVEPAR 370
             L+   L G  + VE AR
Sbjct: 134 RSLDHSVLQGRVITVEKAR 152


>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 289

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 13/187 (6%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVY 316
           ++++VG LP+ V  + L   F+  G +        RD     G+GFV      +A+ AV 
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 172

Query: 317 ELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVEN 496
           + N  E+ G R+ V      +R+A R  R +R                     +R+ V N
Sbjct: 173 KFNSFEVNGRRLTV------NRAAPRGSRPERQPRVYD-------------AAFRIYVGN 213

Query: 497 LSSRISWQDLKDYMRQAGEVTYADAHK-----QHRNEGVVEFATHSDMRAAIEKLDGTEL 661
           L   +    L+    + G+V  A         + R  G V+ +  +++  AI  LDG  L
Sbjct: 214 LPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNL 273

Query: 662 NGRRVRL 682
            GR +++
Sbjct: 274 EGRAIKV 280



 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           R+YVG LP+ V    LE+ F   G++ D  +          G+GFV+  +  + + A+  
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267

Query: 320 LNGKELLGERVVVEPA 367
           L+G+ L G  + V  A
Sbjct: 268 LDGQNLEGRAIKVNVA 283



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = +2

Query: 458 PPTRTEYRLIVENLSSRISWQDLKDYMRQAG-----EVTYADAHKQHRNEGVVEFATHSD 622
           P    E +L V NL   +  Q L     QAG     EV Y     Q R  G V  +T  +
Sbjct: 107 PEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEE 166

Query: 623 MRAAIEKLDGTELNGRRV 676
              A+EK +  E+NGRR+
Sbjct: 167 AEKAVEKFNSFEVNGRRL 184


>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
           contains similarity to polyadenylate-binding protein 5
          Length = 387

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGY--GFVEFEDYRDADDAVYELNGKELL 340
           ++VGGL   V + +L+  F  FG +  + I  G   GFV++ +   A+ A+  LNG +L 
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLG 321

Query: 341 GERVVVEPARGIDRSADR 394
           G+ + +   R  ++ +D+
Sbjct: 322 GQSIRLSWGRSPNKQSDQ 339



 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 35/140 (25%), Positives = 59/140 (42%)
 Frame = +2

Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXX 442
           GYGFV F D  +   A+ E+NG+      + + PA      A++     +          
Sbjct: 197 GYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPA------ANKNALPMQPAMYQNTQGA 250

Query: 443 XXXXXPPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSD 622
                 P  T   + V  L + ++  +LK    Q GE+ +       R  G V++A  + 
Sbjct: 251 NAGDNDPNNTT--IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRC-GFVQYANKAS 307

Query: 623 MRAAIEKLDGTELNGRRVRL 682
              A+  L+GT+L G+ +RL
Sbjct: 308 AEHALSVLNGTQLGGQSIRL 327


>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
           (RPS19)
          Length = 212

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
 Frame = +2

Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 304
           + + +++Y+GGL  G  E  L+  F  F  + +  +          GYGFV F     A+
Sbjct: 27  RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSAN 86

Query: 305 DAVYELNGKELLGERVVVEPAR 370
            A+  +NG+EL G  + V  A+
Sbjct: 87  SAISAMNGQELNGFNISVNVAK 108


>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
           protein similar to nucleolin protein; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 495

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
 Frame = +2

Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAV 313
           GS V++GGLP  V E DL    +  G I ++ L+K+       GY FV F+    A  A+
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174

Query: 314 YELNGKELLGERV 352
            EL+ KE  G+ +
Sbjct: 175 EELHSKEFKGKTI 187


>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif
          Length = 374

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           ++++ GL F   E+ L   F+GFG + ++ I          GY F+E+     A  A+ E
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 320 LNGKELLGERVVVEPAR 370
           +NGK + G  +VV+ A+
Sbjct: 343 MNGKIINGWMIVVDVAK 359


>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
           protein low similarity to RRM-containing protein SEB-4
           [Xenopus laevis] GI:8895698; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 169

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVY 316
           +++YVGGLP+  R+  L  FFK FG I        R+     GYGFV F+D   A  A  
Sbjct: 13  TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72

Query: 317 ELN 325
           + N
Sbjct: 73  DPN 75


>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 455

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD----D 307
           +++VGGLP  + E + + +F  FG I D+++          G+GF+ F+     D     
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182

Query: 308 AVYELNGKELLGERVV 355
             +ELNGK +  +R V
Sbjct: 183 TFHELNGKMVEVKRAV 198


>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
           similar to Glycine-rich RNA-binding protein from {Daucus
           carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
           napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 185

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRD--ILI------KNGYGFVEFEDYRDADDAVYE 319
           R +VGGL +   E+ +E+ F  FG + D  I+I        G+ FV F+D      A+  
Sbjct: 45  RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104

Query: 320 LNGKELLGERVVVEPARG 373
           +NG+EL G  +  + ARG
Sbjct: 105 MNGQELDGRNITAQ-ARG 121


>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 358

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           +++VGGL   V E + +K+F  FG I D+++          G+GF+ + D  +A D V +
Sbjct: 34  KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY-DSEEAVDKVLQ 92

Query: 320 LNGKELLGERVVVEPARGIDRSADRYR 400
               EL G+ V V+ A   D + +  R
Sbjct: 93  KTFHELNGKMVEVKLAVPKDMALNTMR 119


>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 431

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           +++VGGL   V E + +K+F  FG I D+++          G+GF+ + D  +A D V +
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY-DSEEAVDKVLQ 165

Query: 320 LNGKELLGERVVVEPARGIDRSADRYR 400
               EL G+ V V+ A   D + +  R
Sbjct: 166 KTFHELNGKMVEVKLAVPKDMALNTMR 192



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 12/190 (6%)
 Frame = +2

Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 304
           +M   ++++GG+ +   E  L  +F  FG + + +I          G+GFV F D   A+
Sbjct: 2   EMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61

Query: 305 DAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRL 484
             V     K ++  + +VE  + + R        D H               P+ ++ ++
Sbjct: 62  RVVLL---KHIIDGK-IVEAKKAVPR--------DDHVVFNKSNSSLQGSPGPSNSK-KI 108

Query: 485 IVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHS-DMRAAIEK-LDGT- 655
            V  L+S ++  + K Y  Q G +T       HR +    F   S D   A++K L  T 
Sbjct: 109 FVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTF 168

Query: 656 -ELNGRRVRL 682
            ELNG+ V +
Sbjct: 169 HELNGKMVEV 178


>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 431

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           +++VGGL   V E + +K+F  FG I D+++          G+GF+ + D  +A D V +
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISY-DSEEAVDKVLQ 165

Query: 320 LNGKELLGERVVVEPARGIDRSADRYR 400
               EL G+ V V+ A   D + +  R
Sbjct: 166 KTFHELNGKMVEVKLAVPKDMALNTMR 192



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 12/190 (6%)
 Frame = +2

Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDAD 304
           +M   ++++GG+ +   E  L  +F  FG + + +I          G+GFV F D   A+
Sbjct: 2   EMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61

Query: 305 DAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRL 484
             V     K ++  + +VE  + + R        D H               P+ ++ ++
Sbjct: 62  RVVLL---KHIIDGK-IVEAKKAVPR--------DDHVVFNKSNSSLQGSPGPSNSK-KI 108

Query: 485 IVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHS-DMRAAIEK-LDGT- 655
            V  L+S ++  + K Y  Q G +T       HR +    F   S D   A++K L  T 
Sbjct: 109 FVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTF 168

Query: 656 -ELNGRRVRL 682
            ELNG+ V +
Sbjct: 169 HELNGKMVEV 178


>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
           similar to GB:CAB75429 (GI:6996560) from [Nicotiana
           plumbaginifolia], contains Pfam profiles: PF00076 RNA
           recognition motif (3 copies)
          Length = 427

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 46/175 (26%), Positives = 70/175 (40%), Gaps = 4/175 (2%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNGYGFVEFEDYRDADDAVYELNGKE 334
           VYVG +   V E  L++ F   G +    +    K+ YGFV + D R A  A+  LNG+ 
Sbjct: 61  VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRH 120

Query: 335 LLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSRIS 514
           L G+ + V  A         Y  G R               P   T+  L  ++ S   S
Sbjct: 121 LFGQPIKVNWA---------YATGQREDTSSHFNIFVGDLSPEV-TDATL-YQSFSVFSS 169

Query: 515 WQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVR 679
             D +        V +     + R  G V F    D + AI +++G  L+ R++R
Sbjct: 170 CSDAR--------VMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIR 216


>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
           almost identical to SC35-like splicing factor SCL30a
           GI:9843661 from [Arabidopsis thaliana]; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
 Frame = +2

Query: 173 VGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYELNG 328
           V  L    R+ DL + F+ FG ++DI +          G+GF++F D  DA +A ++++G
Sbjct: 41  VRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDG 100

Query: 329 KELLGERVVVEPARGIDRSADRYRRGDR 412
             LLG  + V  A    +     R  DR
Sbjct: 101 YLLLGRELTVVFAEENRKKPTEMRTRDR 128


>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
           RNA binding protein GI:18181938 from (Arabidopsis
           thaliana); contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
           domain 15450911 gb AY054536.1
          Length = 360

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 319
           +++VGGL     E + + +F+ FGR  D+++ +        G+GFV + D  D+ + V +
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTY-DSEDSVEVVMQ 179

Query: 320 LNGKELLGERVVVEPA 367
            N  EL  +RV V+ A
Sbjct: 180 SNFHELSDKRVEVKRA 195


>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
           protein heterogeneous nuclear ribonucleoprotein R, Homo
           sapiens, PIR:T02673; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 471

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
 Frame = +2

Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDADDAV 313
           GS VY+GG+P    E DL+ F    G + ++ I          GY FV F     A +A+
Sbjct: 91  GSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAI 150

Query: 314 YELNGKELLGERV 352
             LN  +  G+R+
Sbjct: 151 DTLNNTDFRGKRI 163


>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           SP|P19684 33 kDa ribonucleoprotein, chloroplast
           precursor {Nicotiana sylvestris}; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 308

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 13/186 (6%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI------KN-GYGFVEFEDYRDADDAVYEL 322
           +++V  LP+ +   D+ + F   G + ++ I      KN G+ FV      +A  A+ + 
Sbjct: 96  KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKF 155

Query: 323 NGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 502
           +  ++ G  + V  AR   +   +                      P  T ++L V NL+
Sbjct: 156 DTFQVSGRIISVSFARRFKKPTPK-------------SPNDLPSPAPGDTRHKLYVSNLA 202

Query: 503 SRISWQDLK------DYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELN 664
            +     L+      D+   +  V +AD   +    G V FAT  +   AI KL+G E+ 
Sbjct: 203 WKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIM 262

Query: 665 GRRVRL 682
           GR + L
Sbjct: 263 GRPITL 268



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 19/50 (38%), Positives = 31/50 (62%)
 Frame = +2

Query: 260 NGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRRGD 409
           +GYGFV F    +A++A+ +LNGKE++G  + ++ +    RSA     GD
Sbjct: 236 SGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSL---RSASESEDGD 282


>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
          Length = 671

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 44/179 (24%), Positives = 69/179 (38%), Gaps = 11/179 (6%)
 Frame = +2

Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADD 307
           K+  + VYV  L   + + +L K F  FG     +I         G+GFV FE+  DA  
Sbjct: 220 KVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAAR 279

Query: 308 AVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLI 487
           AV  LNGK    +   V  A+         ++ +R                       L 
Sbjct: 280 AVDALNGKTFDDKEWFVGKAQ---------KKSERETELKQKFEQSLKEAADKSQGSNLY 330

Query: 488 VENLSSRISWQDLKDYMRQAGEVT----YADAHKQHRNEGVVEFATHSDMRAAIEKLDG 652
           V+NL   ++   L+++    G +T      D     R  G V F+T  +   AI +++G
Sbjct: 331 VKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNG 389



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
 Frame = +2

Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRI------RDIL-IKNGYGFVEFEDYRDADD 307
           K  GS +YV  L   V +  L + F  FG I      RD   +  G GFV F    +A  
Sbjct: 323 KSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATR 382

Query: 308 AVYELNGKELLGERVVVEPA-RGIDRSA 388
           A+ E+NGK ++ + + V  A R  DR A
Sbjct: 383 AITEMNGKMIVTKPLYVALAQRKEDRKA 410



 Score = 32.3 bits (70), Expect = 0.31
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYELN 325
           +++  L   +  + L + F  FG I    +         GYGFV+++    A  A+ +LN
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194

Query: 326 GKELLGERVVVEP 364
           G  L  ++V V P
Sbjct: 195 GMLLNDKQVYVGP 207



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI------RDILIKN--GYGFVEFEDYRDADDAVYEL 322
           +YVG L   V +  L + F   G++      RD+  +   GYG+V +   +DA  A+ EL
Sbjct: 47  LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106

Query: 323 NGKELLGERVVV 358
           N   L G  + V
Sbjct: 107 NFMALNGRAIRV 118



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = +2

Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNE-----GVVEFATHSDMRAAIEKL 646
           L V +L + ++   L +   QAG+V      +          G V +AT  D   A+ +L
Sbjct: 47  LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106

Query: 647 DGTELNGRRVRLV 685
           +   LNGR +R++
Sbjct: 107 NFMALNGRAIRVM 119


>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
           protein GI:1279562 from [Medicago sativa]
          Length = 557

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 15/185 (8%)
 Frame = +2

Query: 158 GSR-VYVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDADDA 310
           GS+ ++   L F +   D+E FFK  G + D+            G+G VEF    +A  A
Sbjct: 295 GSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKA 354

Query: 311 VYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIV 490
           + E +G+ LLG  +       +D + +R  RG+R                    E ++ V
Sbjct: 355 L-EFHGRPLLGREI------RLDIAQERGERGER--PAFTPQSGNFRSGGDGGDEKKIFV 405

Query: 491 ENLSSRISWQDLKDYMRQ----AGEVTYADA--HKQHRNEGVVEFATHSDMRAAIEKLDG 652
           +   + +S  D+K+ +R+     GE+        +   N   + +   S+ +    +L+G
Sbjct: 406 KGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKEKALELNG 465

Query: 653 TELNG 667
           +++ G
Sbjct: 466 SDMGG 470


>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
           PABP, putative non-consensus splice donor TA at exon 1;
           similar to polyadenylate-binding protein
           (poly(A)-binding protein) from [Triticum aestivum]
           GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
           thaliana} SP|P42731; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 407

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 11/185 (5%)
 Frame = +2

Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRD-ILIKNG------YGFVEFEDYRDADDAV 313
           V + VYV  L     + DL++ F  FG I   +++K+G      +GFV FE    A  A+
Sbjct: 117 VFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAI 176

Query: 314 YELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVE 493
            ++NG       VV E    + R+  +  R +                  TR    L V+
Sbjct: 177 EKMNGV------VVDEKELHVGRAQRKTNRTE--DLKAKFELEKIIRDMKTRKGMNLYVK 228

Query: 494 NLSSRISWQDLKDYMRQAGEVTYAD--AHKQHRNEGV--VEFATHSDMRAAIEKLDGTEL 661
           NL   +    L++   + G +T      H    ++GV  VEF+T  +   A+ K++G  +
Sbjct: 229 NLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMV 288

Query: 662 NGRRV 676
             + +
Sbjct: 289 GNKPI 293



 Score = 36.7 bits (81), Expect = 0.014
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
 Frame = +2

Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDIL-------IKNGYGFVEFEDYRDADDAVY 316
           G  +YV  L   V    LE+ F  FG I           I  G GFVEF    +A  A+ 
Sbjct: 222 GMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAML 281

Query: 317 ELNGKELLGERVVVEPAR 370
           ++NGK +  + + V  A+
Sbjct: 282 KMNGKMVGNKPIYVSLAQ 299


>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
           similar to gb|U90212 DNA binding protein ACBF from
           Nicotiana tabacum and contains 3 PF|00076 RNA
           recognition motif domains. ESTs gb|T44278, gb|R65195,
           gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
           gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
          Length = 405

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 37/140 (26%), Positives = 57/140 (40%)
 Frame = +2

Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXX 442
           GYGFV F D  +   A+ E+NG       + + PA     ++ +   G R          
Sbjct: 198 GYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPA-----ASKKGVTGQRDSYQSSAAGV 252

Query: 443 XXXXXPPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSD 622
                P   T   + V  L + ++   LK+   Q GE+ +       R  G V+F+  S 
Sbjct: 253 TTDNDPNNTT---VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC-GFVQFSEKSC 308

Query: 623 MRAAIEKLDGTELNGRRVRL 682
              A+  L+G +L G  VRL
Sbjct: 309 AEEALRMLNGVQLGGTTVRL 328


>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
           (RNA-binding protein cp31) {Arabidopsis thaliana};
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 329

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVYE 319
           RVYVG LP+ V    LE+ F   G++        R+     G+GFV   D  + ++A+  
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304

Query: 320 LNGKELLGERVVVEPA 367
           L+G+ L G  + V  A
Sbjct: 305 LDGQNLEGRAIRVNVA 320



 Score = 35.5 bits (78), Expect = 0.033
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = +2

Query: 458 PPTRTEYRLIVENLSSRISWQDLKDYMRQAG-----EVTYADAHKQHRNEGVVEFATHSD 622
           P    E +L V NL+  ++ Q L     QAG     EV Y     Q R  G V  ++  +
Sbjct: 144 PEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 203

Query: 623 MRAAIEKLDGTELNGR 670
              A+EK +  +LNGR
Sbjct: 204 AETAVEKFNRYDLNGR 219


>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 411

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           +++VGGLP  + + +  ++F+ +G + D+ I          G+GFV F D  DA D+V  
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF-DSEDAVDSVLH 169

Query: 320 LNGKELLGERVVVEPA 367
               +L G++V V+ A
Sbjct: 170 KTFHDLSGKQVEVKRA 185


>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
           protein similar to GI:6650523 from [Arabidopsis
           thaliana]
          Length = 800

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = +2

Query: 206 DLEKFFKGFGRIRDILI---KNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPAR 370
           DL   F   G I++I     K  + FVEF D R A+ A+  LN  E+ G+R+ VEP+R
Sbjct: 268 DLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSR 325



 Score = 32.3 bits (70), Expect = 0.31
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +2

Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTEL 661
           L+V NL   IS  DL       GE+         R+   VEF       AA++ L+  E+
Sbjct: 255 LVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEI 314

Query: 662 NGRRVRL 682
            G+R+++
Sbjct: 315 AGKRIKV 321


>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
           protein similar to GI:6650523 from [Arabidopsis
           thaliana]
          Length = 800

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = +2

Query: 206 DLEKFFKGFGRIRDILI---KNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPAR 370
           DL   F   G I++I     K  + FVEF D R A+ A+  LN  E+ G+R+ VEP+R
Sbjct: 268 DLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSR 325



 Score = 32.3 bits (70), Expect = 0.31
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +2

Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTEL 661
           L+V NL   IS  DL       GE+         R+   VEF       AA++ L+  E+
Sbjct: 255 LVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEI 314

Query: 662 NGRRVRL 682
            G+R+++
Sbjct: 315 AGKRIKV 321


>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
           GB:AAC39463 from [Zea mays], PF00076 RNA recognition
           motif (2 copies)
          Length = 615

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
 Frame = +2

Query: 209 LEKFFKGFGRIRDIL---IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPAR 370
           L + F+ +G I+++     K    FVEF D RDA  A   +NGKE+ G++VV+E +R
Sbjct: 229 LRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQVVIEFSR 285


>At1g07350.2 68414.m00784 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 129

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
 Frame = +2

Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV 313
           G+ +YV GL   V ERDLE  F   G++ D+ +          G+GF+  +   DA+  +
Sbjct: 44  GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 103

Query: 314 YELNGKELLGERVVVE 361
             L+   L G  + VE
Sbjct: 104 RSLDHSVLQGRVITVE 119


>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
           protein low similarity to Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) from
           {Homo sapiens} SP|Q14011, {Rattus norvegicus}
           SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 172

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVY 316
           S ++V G    V E  L+K F  FG++ ++ +I N       GYG+V F    DA  AV 
Sbjct: 77  SSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 136

Query: 317 ELNGKELLGERVVVE 361
            +NGK   G  ++V+
Sbjct: 137 AMNGKFFDGRFILVK 151



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +2

Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYA-----DAHKQHRNEGVVEFATHSDMRAAIEKL 646
           L V+  S  +S   LK    + G+VT       +  +Q    G V F +  D ++A+E +
Sbjct: 79  LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 138

Query: 647 DGTELNGR 670
           +G   +GR
Sbjct: 139 NGKFFDGR 146


>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
           protein
          Length = 527

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 322
           V+   +P    ERD+ +FF   G++RD+ +          G G++EF D      A+  L
Sbjct: 170 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI-AL 228

Query: 323 NGKELLGERVVVEPA 367
           +G+  LG+ V+V+P+
Sbjct: 229 SGQLFLGQPVMVKPS 243



 Score = 36.7 bits (81), Expect = 0.014
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDADDAVYE 319
           ++YVG L F + E  L + F+ FG +  + +          G+GF++F     +  A   
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325

Query: 320 LNGK-ELLGERVVV 358
           LNGK E+ G  + V
Sbjct: 326 LNGKLEIAGRTIKV 339


>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
           protein similar to chloroplast RNA-binding protein cp33
           [Arabidopsis thaliana] GI:681912; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM) domain
          Length = 253

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 41/187 (21%), Positives = 76/187 (40%), Gaps = 14/187 (7%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           RVY+G +P  V    L K  +  G +  + +           +GF   +   DA+  V +
Sbjct: 77  RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136

Query: 320 LNGKELLGERVVVE-PARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVEN 496
           LNG  + G  + V    + I  S D                          + Y++ V N
Sbjct: 137 LNGNTVEGREIKVNITEKPIASSPD-------------LSVLQSEDSAFVDSPYKVYVGN 183

Query: 497 LSSRISWQDLKDYMRQAGEVTYADAHK-----QHRNEGVVEFATHSDMRAAIEKLDGTEL 661
           L+  ++ + L++   + G+V  A   +     +    G V F++  D+ AAI  L+ + L
Sbjct: 184 LAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLL 243

Query: 662 NGRRVRL 682
            G+++R+
Sbjct: 244 EGQKIRV 250


>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 495

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 12/76 (15%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV-- 313
           +++VGGLP  V E D + +F+ FG   D+++          G+GF+ ++     +  +  
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168

Query: 314 --YELNGKELLGERVV 355
             +ELNGK +  +R V
Sbjct: 169 TFHELNGKMVEVKRAV 184



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 14/187 (7%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGR-IRDILIKN-------GYGFVEFEDYRDADDAVYE 319
           ++++GG+ +   E  L+++F  FG  I  +++K+       G+GFV F D   A+  + E
Sbjct: 7   KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66

Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
              K  +  R +VE  + + R  D     +R                P RT  ++ V  L
Sbjct: 67  ---KHNIDGR-LVEAKKAVPR--DDQNMVNRSNSSSIQGSPGG----PGRTR-KIFVGGL 115

Query: 500 SSRISWQDLKDYMRQAG---EVTYADAHKQHRNEGVVEFATHSDMRAAIEKL---DGTEL 661
            S ++  D K Y  Q G   +V     H   R  G   F T+ D   A+EK+      EL
Sbjct: 116 PSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRG-FGFITY-DSEEAVEKVLLKTFHEL 173

Query: 662 NGRRVRL 682
           NG+ V +
Sbjct: 174 NGKMVEV 180


>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative contains Pfam profile:
           PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
           domain)
          Length = 494

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 12/76 (15%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV-- 313
           +++VGGLP  V E D + +F+ FG   D+++          G+GF+ ++     +  +  
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168

Query: 314 --YELNGKELLGERVV 355
             +ELNGK +  +R V
Sbjct: 169 TFHELNGKMVEVKRAV 184



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 14/187 (7%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGR-IRDILIKN-------GYGFVEFEDYRDADDAVYE 319
           ++++GG+ +   E  L+++F  FG  I  +++K+       G+GFV F D   A+  + E
Sbjct: 7   KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66

Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
              K  +  R +VE  + + R  D     +R                P RT  ++ V  L
Sbjct: 67  ---KHNIDGR-LVEAKKAVPR--DDQNMVNRSNSSSIQGSPGG----PGRTR-KIFVGGL 115

Query: 500 SSRISWQDLKDYMRQAG---EVTYADAHKQHRNEGVVEFATHSDMRAAIEKL---DGTEL 661
            S ++  D K Y  Q G   +V     H   R  G   F T+ D   A+EK+      EL
Sbjct: 116 PSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRG-FGFITY-DSEEAVEKVLLKTFHEL 173

Query: 662 NGRRVRL 682
           NG+ V +
Sbjct: 174 NGKMVEV 180


>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
           similar to glycine-rich RNA-binding protein from
           {Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
           sativum]; contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 155

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 316
           S+++VGGL        L++ F  FG+I D ++          G+GFV ++    A++A+ 
Sbjct: 36  SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95

Query: 317 ELNGKELLGERVVVEPA 367
            +  KEL G  + V PA
Sbjct: 96  AMQNKELDGRIIGVHPA 112


>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
           DNA binding protein ACBF - Nicotiana tabacum,
           PID:g1899188
          Length = 415

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 9/181 (4%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKG-FGRIRDILIKN--------GYGFVEFEDYRDADDAVYE 319
           V+VG L   V +  L + FK  +  ++   + N        GYGFV F D  +   A+ E
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234

Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
           +NG+      +   PA      A++ +                    PT T   + V  +
Sbjct: 235 MNGQYCSSRPMRTGPA------ANK-KPLTMQPASYQNTQGNSGESDPTNTT--IFVGAV 285

Query: 500 SSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVR 679
              ++  DLK    Q GE+ +       R  G V++A  +    A+  L+GT+L G+ +R
Sbjct: 286 DQSVTEDDLKSVFGQFGELVHVKIPAGKRC-GFVQYANRACAEQALSVLNGTQLGGQSIR 344

Query: 680 L 682
           L
Sbjct: 345 L 345


>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
           SP|P10979 Glycine-rich RNA-binding, abscisic
           acid-inducible protein {Zea mays}; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 142

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
 Frame = +2

Query: 152 MVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADD 307
           +   R++V GL        L+  F  FG++ D  +          G+GFV +    DA+ 
Sbjct: 31  LTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEK 90

Query: 308 AVYELNGKELLGERVVVEPAR 370
           A  E+N K L G  + V+PAR
Sbjct: 91  AKAEMNAKFLDGWVIFVDPAR 111


>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
           protein similar to SP|Q14011 Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) {Homo
           sapiens}; contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 157

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = +2

Query: 179 GLPFGVRERDLEKFFKGFGR-IRDILIKN--GYGFVEFEDYRDADDAVYELNGKELLGER 349
           GL     ++ L + F  F R I+D   +   G+GF+ FE   DA  A+  LNGK + G  
Sbjct: 77  GLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRL 136

Query: 350 VVVEPARGID 379
           + VE A+ ++
Sbjct: 137 IFVETAKEVE 146


>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
           protein similar to SP|P48809 Heterogeneous nuclear
           ribonucleoprotein 27C (hnRNP 48) {Drosophila
           melanogaster}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM);
           non-consensus TA donor splice site at exon 6
          Length = 379

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
 Frame = +2

Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 310
           +G++++VG LP      DL  +F  FG I+D  I          G+GFV F +   AD  
Sbjct: 238 IGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRV 297

Query: 311 VYELNGKELLGERVVVEPARGIDRS 385
                  E+ G+ V ++ A  +D +
Sbjct: 298 A--RRSHEICGQEVAIDSATPLDEA 320


>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
           Cold-inducible RNA-binding protein (Glycine-rich
           RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
           {Rattus norvegicus} SP|Q61413,{Xenopus laevis};
           SP|O93235; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 102

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
 Frame = +2

Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDAD 304
           K + ++++V  L     ++ L + F  FG+I++  LI++       G+GF+ F+   DA 
Sbjct: 3   KRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDAR 62

Query: 305 DAVYELNGKELLGERVVVEPARGID 379
            A+  L+GK + G  + VE A+  +
Sbjct: 63  KALKSLDGKIVDGRLIFVEVAKNAE 87



 Score = 31.5 bits (68), Expect = 0.54
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
 Frame = +2

Query: 467 RTEYRLIVENLSSRISWQDLKDYMRQAGEVTYA----DAHKQH-RNEGVVEFATHSDMRA 631
           R   +L V  LS+  + Q L+      G++  A    D+  Q  +  G + F +  D R 
Sbjct: 4   RISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARK 63

Query: 632 AIEKLDGTELNGRRV 676
           A++ LDG  ++GR +
Sbjct: 64  ALKSLDGKIVDGRLI 78


>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
           identical to splicing factor RSZ33 [Arabidopsis
           thaliana] GI:9843663; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00098: Zinc knuckle
          Length = 260

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +2

Query: 251 LIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGIDR-SADRYRRG 406
           L+ + +   EF D RDADDA + L+G++  G R+ VE +RG  R S D   RG
Sbjct: 11  LLSSHFRNQEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRGSRDFDSRG 63


>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
           PABP, putative
          Length = 662

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 41/185 (22%), Positives = 76/185 (41%), Gaps = 11/185 (5%)
 Frame = +2

Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRD-ILIKNG------YGFVEFEDYRDADD 307
           KM  + VYV  L     + +L+  F  +G I   +++++G      +GFV FE+  DA  
Sbjct: 221 KMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAAR 280

Query: 308 AVYELNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLI 487
           AV  LNGK+   +   V  A+         ++ +R                       L 
Sbjct: 281 AVEALNGKKFDDKEWYVGKAQ---------KKSERELELSRRYEQGSSDGGNKFDGLNLY 331

Query: 488 VENLSSRISWQDLKDYMRQAGEVT----YADAHKQHRNEGVVEFATHSDMRAAIEKLDGT 655
           V+NL   ++ + L++   + G +T      D     +  G V F+  S+    + +++G 
Sbjct: 332 VKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGK 391

Query: 656 ELNGR 670
            + G+
Sbjct: 392 MVGGK 396



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 11/179 (6%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYELN 325
           ++V  L   V  + L + F G G I    +         GYGFV+F+    A +A+ +LN
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195

Query: 326 GKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSS 505
           GK L  +++ V P     R  +R    D+                       + V+NLS 
Sbjct: 196 GKVLNDKQIFVGP---FLRKEERESAADKMKFT------------------NVYVKNLSE 234

Query: 506 RISWQDLKDYMRQAGEVTYA----DAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGR 670
             +  +LK    Q G ++ A    D   + R  G V F    D   A+E L+G + + +
Sbjct: 235 ATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDK 293



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 12/182 (6%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI------RDILIKN--GYGFVEFEDYRDADDAVYEL 322
           +YVG L F V +  L  +F    ++      RD       GYG+V + +  DA+ A+ +L
Sbjct: 48  LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107

Query: 323 NGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 502
           N   L G+ + +  +   D SA R   G+                        L V+NL 
Sbjct: 108 NYSYLNGKMIRITYSSR-DSSARRSGVGN------------------------LFVKNLD 142

Query: 503 SRISWQDLKDYMRQAGEVTYADAHKQH----RNEGVVEFATHSDMRAAIEKLDGTELNGR 670
             +  + L +     G +        H    R  G V+F T    + AIEKL+G  LN +
Sbjct: 143 KSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDK 202

Query: 671 RV 676
           ++
Sbjct: 203 QI 204



 Score = 31.9 bits (69), Expect = 0.41
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
 Frame = +2

Query: 149 KMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADD 307
           K  G  +YV  L   V +  L + F  FG I    +         G GFV F    +A  
Sbjct: 324 KFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASR 383

Query: 308 AVYELNGKELLGERVVVEPAR 370
            + E+NGK + G+ + V  A+
Sbjct: 384 VLNEMNGKMVGGKPLYVALAQ 404


>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
           RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
           from [Homo sapiens], RNA-binding protein Y14 [Xenopus
           laevis] GI:11034807; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 202

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK--------NGYGFVEFEDYRDADDAVYEL 322
           + V G+    +E D+   F  FG I+++ +          GY  +E+E   +A  A+  +
Sbjct: 97  ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156

Query: 323 NGKELLGERVVVEPARGIDRS-ADRYRR 403
           NG ELL + V V+ A     S  + YRR
Sbjct: 157 NGAELLTQNVSVDWAFSSGPSGGESYRR 184


>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
           protein similar to SP|P52298 20 kDa nuclear cap binding
           protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
           protein 1) (NIP1) {Homo sapiens}; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 124

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-----KNGYGFVEFEDYRDADDAVYELNGK 331
           +YV  LPF +   ++   F  +G IR I I       G  FV +ED  DA +AV  L+G 
Sbjct: 21  LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSGF 80

Query: 332 ELLGERVVV 358
            +    ++V
Sbjct: 81  NVANRYLIV 89


>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
           protein Mei2-like protein - Arabidopsis thaliana,
           EMBL:D86122
          Length = 907

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI---LIKNGYGFVEFEDYRDADDAVYELNGKEL 337
           ++V  L   +   +L   F  +G IR++   + +N   ++EF D R A  A+  LNG E+
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQGLNGLEV 356

Query: 338 LGERVVVEP 364
            G ++ + P
Sbjct: 357 AGRQLKLAP 365



 Score = 34.7 bits (76), Expect = 0.058
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +2

Query: 470 TEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLD 649
           +E  L V NL S IS ++L       GE+          ++  +EF      + A++ L+
Sbjct: 293 SEGALWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQGLN 352

Query: 650 GTELNGRRVRL 682
           G E+ GR+++L
Sbjct: 353 GLEVAGRQLKL 363


>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 222

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNG----YGFVEFEDYRDADDAVYEL 322
           +Y+G +P G  E ++E FF  FG ++ + +    K G    +GF++FED   A+ A   +
Sbjct: 62  LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121

Query: 323 NGKELLGERV---VVEP 364
           N   L+   +   V+EP
Sbjct: 122 NDYLLMEHMLKVHVIEP 138


>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
           similar to oligouridylate binding protein GI:6996560
           from [Nicotiana plumbaginifolia]
          Length = 426

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 44/175 (25%), Positives = 70/175 (40%), Gaps = 4/175 (2%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNGYGFVEFEDYRDADDAVYELNGKE 334
           VY G +   V E  L++ F   G I    +    K+ YGFV + D R A  A+  LNG+ 
Sbjct: 65  VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124

Query: 335 LLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSSRIS 514
           + G+ + V  A         Y  G R               P   T+  L  ++ S+  S
Sbjct: 125 IFGQPMKVNWA---------YATGQREDTSSHFNIFVGDLSPEV-TDAALF-DSFSAFNS 173

Query: 515 WQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVR 679
             D +        V +     + R  G V F    D + AI +++G  ++ R++R
Sbjct: 174 CSDAR--------VMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIR 220


>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
           protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 423

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           +++VGG+P  V + + ++FF  FG +++  I          G+GFV +E     D  + +
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190

Query: 320 LNGKELLGERVVVEPA 367
            N  EL G +V ++ A
Sbjct: 191 GNRIELSGTQVEIKKA 206


>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
           like factor 3 [Homo sapiens] GI:12746392; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 439

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYEL 322
           +++VG LP  V E +++  F  +G I+D+ I         G  F+++E    A  A+  +
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166

Query: 323 NGKELLGERVVVEPARGIDRSADRYRR 403
           NGK  +    V    +  D   +R+ R
Sbjct: 167 NGKHKMEGSTVPLVVKWADTERERHTR 193


>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
           like factor 3 [Homo sapiens] GI:12746392; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 441

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYEL 322
           +++VG LP  V E +++  F  +G I+D+ I         G  F+++E    A  A+  +
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166

Query: 323 NGKELLGERVVVEPARGIDRSADRYRR 403
           NGK  +    V    +  D   +R+ R
Sbjct: 167 NGKHKMEGSTVPLVVKWADTERERHTR 193



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
 Frame = +2

Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAV 313
           G+ +++  +P    +++L   F+ FG +    +           +GFV ++    A +A+
Sbjct: 348 GANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAI 407

Query: 314 YELNGKELLGERVVVEPAR 370
             +NG+ L G+++ V+  R
Sbjct: 408 DMMNGRHLGGKKLKVQLKR 426


>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
           protein low similarity to Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) from
           {Homo sapiens} SP|Q14011, {Rattus norvegicus}
           SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 126

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVY 316
           S ++V G    V E  L+K F  FG++ ++ +I N       GYG+V F    DA  AV 
Sbjct: 58  SSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 117

Query: 317 ELNGK 331
            +NGK
Sbjct: 118 AMNGK 122


>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 952

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KN-GYGFVEFEDYRDADDAVY 316
           +++VG LP  +++ + E+FF+ FG I ++++        KN G+GF+ +   + A  AV 
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAV- 224

Query: 317 ELNGKELLGERVVVE 361
           E +G E  G  + V+
Sbjct: 225 EFDGVEFHGRILTVK 239


>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
           identical to GB:Q05196 from [Arabidopsis thaliana]
          Length = 668

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 11/176 (6%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI------RDILIKN-GYGFVEFEDYRDADDAVYELN 325
           V++  L   +  + L + F  FG I       D++ ++ GYGFV+FE    A  A+ +LN
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 193

Query: 326 GKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLSS 505
           G  L  ++V V             RR DR                P+ T   + V+NL  
Sbjct: 194 GMLLNDKQVFV---------GHFVRRQDR--------ARSESGAVPSFT--NVYVKNLPK 234

Query: 506 RISWQDLKDYMRQAGEVTYA----DAHKQHRNEGVVEFATHSDMRAAIEKLDGTEL 661
            I+  +LK    + G+++ A    D     R+ G V F +      A+EK++G  L
Sbjct: 235 EITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISL 290



 Score = 35.9 bits (79), Expect = 0.025
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
 Frame = +2

Query: 119 FES*FIIVYWKMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFV 277
           FE   I  + K+ GS +Y+  L   V +  L++ F  +G +    +         G+GFV
Sbjct: 314 FEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFV 373

Query: 278 EFEDYRDADDAVYELNGKELLGER 349
            + +  +A  A+ E+NGK ++G +
Sbjct: 374 AYSNPEEALLAMKEMNGK-MIGRK 396



 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
 Frame = +2

Query: 458 PPTRTEYR--LIVENLSSRISWQDLKDYMRQAGEVTYA----DAHKQHRNEGVVEFATHS 619
           P TR   +  + ++NL + I  + L +     G +       D   + +  G V+F    
Sbjct: 124 PSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEE 183

Query: 620 DMRAAIEKLDGTELNGRRV 676
             +AAI+KL+G  LN ++V
Sbjct: 184 TAQAAIDKLNGMLLNDKQV 202


>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 358

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           +++VGG+P  V E +L+ FF  +G + +  +          G+GFV F+     D+ + +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169

Query: 320 LNGKELLGERVVV---EPARGIDRSADRY 397
            N  ++   +V +   EP + ++RS   Y
Sbjct: 170 GNMIDMADTQVEIKKAEPKKSLNRSPPSY 198


>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
           protein low similarity to heterogeneous nuclear
           ribonucleoprotein G [Mus musculus] GI:5579009; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 152

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
 Frame = +2

Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDA 310
           + S++ V  LPF   E  L++ F  FG I ++ LIK+       GY F++F    DA  A
Sbjct: 38  LASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLA 97

Query: 311 VYELNGKELLGERVVVEPAR 370
           +  ++ +   G  + ++ A+
Sbjct: 98  IETMDRRMYNGRMIYIDIAK 117



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = +2

Query: 479 RLIVENLSSRISWQDLKDYMRQAGEVTYA-----DAHKQHRNEGVVEFATHSDMRAAIEK 643
           +++V NL    S   LK      GE+        +A K+ +    ++F +  D   AIE 
Sbjct: 41  KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100

Query: 644 LDGTELNGRRV 676
           +D    NGR +
Sbjct: 101 MDRRMYNGRMI 111


>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif
          Length = 177

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
 Frame = +2

Query: 152 MVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADD 307
           M  + +YVGGL   V E  L   F  FG I+D+             +GFV F +  DA  
Sbjct: 10  MQKNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASA 69

Query: 308 AVYELNGKELLGERVVVEPA 367
           A+  ++G EL G  + V  A
Sbjct: 70  AMDNMDGAELYGRVLTVNYA 89



 Score = 35.1 bits (77), Expect = 0.044
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +2

Query: 569 AHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGR 670
           A+++HR+ G V F    D  AA++ +DG EL GR
Sbjct: 49  ANQKHRSFGFVTFLEREDASAAMDNMDGAELYGR 82


>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
           protein Mei2-like protein, Arabidopsis thaliana,
           EMBL:D86122
          Length = 915

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 22/68 (32%), Positives = 36/68 (52%)
 Frame = +2

Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTEL 661
           L+V NL S IS Q+L   ++  GEV          ++  +EF       AA+  L+G E+
Sbjct: 304 LLVNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEV 363

Query: 662 NGRRVRLV 685
            G++++LV
Sbjct: 364 AGKKLQLV 371



 Score = 35.9 bits (79), Expect = 0.025
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = +2

Query: 173 VGGLPFGVRERDLEKFFKGFGRIRDI---LIKNGYGFVEFEDYRDADDAVYELNGKELLG 343
           V  L   +  ++L +  K +G +++I   +  N   ++EF D R A  A+  LNG E+ G
Sbjct: 306 VNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAG 365

Query: 344 ERVVVEP 364
           +++ + P
Sbjct: 366 KKLQLVP 372


>At5g51300.2 68418.m06360 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVY 316
           + +Y+G LP  + +  L   F  FG I        R   +  GYGFV++ D + A+ AV 
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539

Query: 317 ELNGKELLGERVVVEPA 367
            +NG    G  + V  A
Sbjct: 540 AMNGYRFEGRTLAVRIA 556


>At5g51300.1 68418.m06359 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVY 316
           + +Y+G LP  + +  L   F  FG I        R   +  GYGFV++ D + A+ AV 
Sbjct: 480 TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539

Query: 317 ELNGKELLGERVVVEPA 367
            +NG    G  + V  A
Sbjct: 540 AMNGYRFEGRTLAVRIA 556


>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
          Length = 425

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIK--NGYGFVEFEDYRDADDAVYELNGKELL 340
           + V  L   V E +L+K F   G +  + I    GYG+V+F+    A++AV  + G +++
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQG-QVI 297

Query: 341 GERVV 355
           G++ V
Sbjct: 298 GQQAV 302



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 38/180 (21%), Positives = 73/180 (40%), Gaps = 8/180 (4%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYEL 322
           +++G L + V E  L   F   G +  + +I+N       GYGF+EF  +  A+  +   
Sbjct: 26  LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85

Query: 323 NGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 502
           NG ++ G  +          S  +   G  H               P  T+Y L+ E   
Sbjct: 86  NGTQMPGTELTFRLNWASFGSGQKVDAGPDH-------SIFVGDLAPDVTDY-LLQETF- 136

Query: 503 SRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
            R+ +  ++       +V    +  + +  G V+FA  S+   A+ +++G   + R +R+
Sbjct: 137 -RVHYSSVR-----GAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRI 190


>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 783

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--KN-----GYGFVEFEDYRDADDAVYE 319
           ++++V  + F   +R+L + F  FG+I+ + +  KN     GY FVEF   ++A +A   
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKA 728

Query: 320 LNGKELLGERVVVEPARGIDRSADRYRR 403
           L      G  +V+E A   D S +  R+
Sbjct: 729 LASTHFYGRHLVLEWAND-DNSMEAIRK 755



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 254 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVV 358
           + +GYGFVEF+    A     +L G  L G  +++
Sbjct: 613 LSSGYGFVEFDSVETATSVYRDLQGTVLDGHALIL 647


>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 533

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 12/176 (6%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 319
           +++VG +P    E ++  +F+  G + ++ LIK+       G  FV++   +DAD A+  
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180

Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
           L+ +  L       P  G      RY  G+R                    E++L V +L
Sbjct: 181 LHNQITL-------PG-GTGPVQVRYADGERERIGTL--------------EFKLFVGSL 218

Query: 500 SSRISWQDLKDYMRQAGEVT----YADAHKQHRNEGVVEFATHSDMRAAIEKLDGT 655
           + + + +++++   Q G V       D ++Q R  G V++++     AAI+ L+GT
Sbjct: 219 NKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGT 274


>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
           (FCA) identical to SP|O04425 Flowering time control
           protein FCA {Arabidopsis thaliana}; four alternative
           splice variants, one splicing isoform contains a
           non-consensus CA donor splice site, based on cDNA:
           gi:2204090
          Length = 747

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 12/176 (6%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 319
           +++VG +P    E ++  +F+  G + ++ LIK+       G  FV++   +DAD A+  
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180

Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
           L+ +  L       P  G      RY  G+R                    E++L V +L
Sbjct: 181 LHNQITL-------PG-GTGPVQVRYADGERERIGTL--------------EFKLFVGSL 218

Query: 500 SSRISWQDLKDYMRQAGEVT----YADAHKQHRNEGVVEFATHSDMRAAIEKLDGT 655
           + + + +++++   Q G V       D ++Q R  G V++++     AAI+ L+GT
Sbjct: 219 NKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGT 274


>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 404

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           +++VGGLP  +   +   +F+ +G + D +I          G+GFV F D  D+ D V  
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSF-DSEDSVDLVLH 169

Query: 320 LNGKELLGERVVVEPA 367
               +L G++V V+ A
Sbjct: 170 KTFHDLNGKQVEVKRA 185



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFED 289
           ++++GG+ +   E  L ++F  FG +  + +          G+GFV F D
Sbjct: 7   KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSD 56


>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
           to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
           associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
           splicing factor SF3b 49 kDa subunit) {Homo sapiens};
           contains Pfam profile PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain)
          Length = 363

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
 Frame = +2

Query: 155 VGSRVYVGGLPFGVRERDLEKFFKGFGRI-------RDILIKN--GYGFVEFEDYRDADD 307
           VG+ +++G L   V E+ L   F  FG I       RD    N  G+GF+ ++ +  +D 
Sbjct: 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDA 169

Query: 308 AVYELNGKELLGERVVVEPARGIDRSADRY 397
           A+  + G+ L   ++ V  A   D   +R+
Sbjct: 170 AIESMTGQYLSNRQITVSYAYKKDTKGERH 199



 Score = 35.9 bits (79), Expect = 0.025
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKN--------GYGFVEFEDYRDADDAVYEL 322
           VYVGGL   + E  L + F   G + ++ +           YGF+E+    DAD A+  L
Sbjct: 27  VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86

Query: 323 NGKELLGERVVVEPARGIDRSAD 391
           N  +L G+ + V  A    +S D
Sbjct: 87  NMIKLHGKPIRVNKASQDKKSLD 109


>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1056

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 10/183 (5%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAVY--ELNGKELL 340
           ++VGG+   V + DLE+ F  FG+I D           F DY + DDA+    +NGK + 
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERK-TAFIDYYEMDDALQAKSMNGKPMG 310

Query: 341 GERVVVEPARGIDRSADRY------RRGDRH--XXXXXXXXXXXXXXPPTRTEYRLIVEN 496
           G  + V+  R      +++      R G+ +                 P++  +      
Sbjct: 311 GSFLRVDFLRSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWIGFPPT 370

Query: 497 LSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRV 676
            +     Q L + M   GE+    ++   RN  +VEF +  + R   E L G   N  R+
Sbjct: 371 ATQCNDEQILHNAMILFGEIERVKSYPS-RNFALVEFRSAEEARQCKEGLQGRLFNNPRI 429

Query: 677 RLV 685
           +++
Sbjct: 430 KIM 432



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGYGFVEFEDYRDADDAV 313
           + ++VG L     E DL + F  +G I  I + +  GF  F  YR  ++AV
Sbjct: 18  NNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFA-FIYYRHVEEAV 67


>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
          Length = 660

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 9/181 (4%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI---KNG----YGFVEFEDYRDADDAVYE 319
           + VYV  LP  + E +L K F  FG I   ++   ++G    +GFV FE    A  AV +
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288

Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
           +NG  L  + + V  A+      +  RR                          L ++NL
Sbjct: 289 MNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGA---------NLYLKNL 339

Query: 500 SSRISWQDLKDYMRQAGEVTYADA--HKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRR 673
              +  + LK+   + G VT +    + Q  + G   F  +S+   A+  L  +E+NG+ 
Sbjct: 340 DDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRG-FGFVAYSNPEEALRAL--SEMNGKM 396

Query: 674 V 676
           +
Sbjct: 397 I 397



 Score = 32.7 bits (71), Expect = 0.23
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
 Frame = +2

Query: 119 FES*FIIVYWKMVGSRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFV 277
           FE   I  + K  G+ +Y+  L   V +  L++ F  +G +    +         G+GFV
Sbjct: 318 FEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFV 377

Query: 278 EFEDYRDADDAVYELNGKELLGER 349
            + +  +A  A+ E+NGK ++G +
Sbjct: 378 AYSNPEEALRALSEMNGK-MIGRK 400



 Score = 32.3 bits (70), Expect = 0.31
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYELN 325
           +++  L   +  + L + F  FG I    +         GYGFV+FE    A  A+ +LN
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197

Query: 326 GKELLGERVVV 358
           G  +  ++V V
Sbjct: 198 GMLMNDKQVFV 208



 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
 Frame = +2

Query: 458 PPTRTEYR--LIVENLSSRISWQDLKDYMRQAGEVTYA----DAHKQHRNEGVVEFATHS 619
           P TR   +  + ++NL + I  + L +     G +       D   + +  G V+F    
Sbjct: 128 PSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEE 187

Query: 620 DMRAAIEKLDGTELNGRRV 676
             +AAI+KL+G  +N ++V
Sbjct: 188 SAQAAIDKLNGMLMNDKQV 206


>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           
          Length = 458

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
 Frame = +2

Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRD----ILIKNG----YGFVEFEDYRDADDAV 313
           G+ +YV  LPF      LE  FK FG I +    ++ + G    YGFVEFE+  DA    
Sbjct: 318 GTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEE-ADAAHRA 376

Query: 314 YELNGKELLGERVVVE 361
            E +  ++ G R  VE
Sbjct: 377 IEASPVKIGGLRAFVE 392


>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 391

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIR--DILIKNG-------YGFVEFEDYRDADDAV-- 313
           VYV  LP  +   ++E+ FK FG I+   + ++         Y FVEFED    ++A+  
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 318

Query: 314 --YELNGKELLGERVVVEPA--RGIDRSADRYRRG 406
               L G+++  E     PA  RG  R   R R G
Sbjct: 319 SPIYLGGRQVYIEERRPNPAGVRGARRGGGRGRGG 353


>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 450

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 15/95 (15%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIR--DILIKNG-------YGFVEFEDYRDADDAV-- 313
           VYV  LP  +   ++E+ FK FG I+   + ++         Y FVEFED    ++A+  
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 377

Query: 314 --YELNGKELLGERVVVEPA--RGIDRSADRYRRG 406
               L G+++  E     PA  RG  R   R R G
Sbjct: 378 SPIYLGGRQVYIEERRPNPAGVRGARRGGGRGRGG 412


>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 565

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 319
           R++VGGLP+   E  + +  + FG ++   L+K+       GY F  ++D    D A   
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419

Query: 320 LNGKELLGERVVVEPA 367
           LNG ++  + + V  A
Sbjct: 420 LNGIKMGDKTLTVRRA 435


>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 542

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 319
           R++VGGLP+   E  + +  + FG ++   L+K+       GY F  ++D    D A   
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419

Query: 320 LNGKELLGERVVVEPA 367
           LNG ++  + + V  A
Sbjct: 420 LNGIKMGDKTLTVRRA 435


>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 573

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 319
           R++VGGLP+   E  + +  + FG ++   L+K+       GY F  ++D    D A   
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419

Query: 320 LNGKELLGERVVVEPA 367
           LNG ++  + + V  A
Sbjct: 420 LNGIKMGDKTLTVRRA 435


>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
           protein low similarity to enhancer binding protein-1;
           EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
           kDa ribonucleoprotein, chloroplast precursor (28RNP)
           {Nicotiana sylvestris}; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 304

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKG-FGRI--RDILI------KNGYGFVEFEDYRDADDAVYE 319
           ++V  L F  R + L++FF    G +   +++        +GYGFV F+  + A+ A+ E
Sbjct: 191 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIE 250

Query: 320 LNGKELLGERV 352
             GK+ LG  +
Sbjct: 251 FQGKDFLGRPI 261


>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 271

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI---KN-----GYGFVEFEDYRDADDAVY 316
           ++V+VGGL +     ++ ++F+ FG I + +I   KN     GYGFV F +   A  AV 
Sbjct: 17  TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76

Query: 317 ELN 325
           + N
Sbjct: 77  DPN 79


>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 287

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI---KN-----GYGFVEFEDYRDADDAVY 316
           ++V+VGGL +     ++ ++F+ FG I + +I   KN     GYGFV F +   A  AV 
Sbjct: 17  TKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76

Query: 317 ELN 325
           + N
Sbjct: 77  DPN 79


>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
           terminal ear1 gb|AAC39463.1
          Length = 527

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +2

Query: 194 VRERDLEKFFKGFG---RIRDILIKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 364
           V    L   F+ +G   ++R+   K    FVEF D RDA  A+  +NGK + G+ +V++ 
Sbjct: 194 VSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQF 253

Query: 365 AR 370
           +R
Sbjct: 254 SR 255



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = +2

Query: 458 PPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAI 637
           P    +  L++ NL   +S   L+   +  GEV         R +  VEF    D   A+
Sbjct: 177 PEGNNQGSLVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKAL 236

Query: 638 EKLDGTELNGR 670
             ++G  ++G+
Sbjct: 237 RVMNGKVISGK 247


>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
          Length = 589

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYE 319
           R++VGGLP+   E  + +  + FG +R   L+K+       GY F  ++D    D A   
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435

Query: 320 LNGKELLGERVVVEPA 367
           LNG ++  + + V  A
Sbjct: 436 LNGIKMGDKTLTVRRA 451


>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 146

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 316
           ++V+VGGL +     ++ ++F  FG I + +I          GYGFV F D   A  AV 
Sbjct: 17  TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76

Query: 317 ELN 325
           + N
Sbjct: 77  DPN 79


>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
           putative
          Length = 242

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
 Frame = +2

Query: 470 TEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAH--KQHRNEGVVE--FATHSDMRAAI 637
           T  +L + NL   +  +D+K+   + GE+     H  +  R++G  E  ++   D  AA+
Sbjct: 84  TGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAV 143

Query: 638 EKLDGTELNGRRVRL 682
           +K +  +L+G+ +++
Sbjct: 144 KKYNDVQLDGKPMKI 158


>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
           putative
          Length = 178

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
 Frame = +2

Query: 470 TEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAH--KQHRNEGVVE--FATHSDMRAAI 637
           T  +L + NL   +  +D+K+   + GE+     H  +  R++G  E  ++   D  AA+
Sbjct: 20  TGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAV 79

Query: 638 EKLDGTELNGRRVRL 682
           +K +  +L+G+ +++
Sbjct: 80  KKYNDVQLDGKPMKI 94


>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
           putative
          Length = 244

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
 Frame = +2

Query: 470 TEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAH--KQHRNEGVVE--FATHSDMRAAI 637
           T  +L + NL   +  +D+K+   + GE+     H  +  R++G  E  ++   D  AA+
Sbjct: 86  TGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAV 145

Query: 638 EKLDGTELNGRRVRL 682
           +K +  +L+G+ +++
Sbjct: 146 KKYNDVQLDGKPMKI 160


>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
           (U1-70k)
          Length = 427

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 322
           ++V  L +   E  +++ F+ +G I+ + +          GY F+E+   RD   A  + 
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199

Query: 323 NGKELLGERVVVEPARG 373
           +G+++ G RV+V+  RG
Sbjct: 200 DGQKIDGRRVLVDVERG 216



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 599 VEFATHSDMRAAIEKLDGTELNGRRV 676
           +E+    DM+AA ++ DG +++GRRV
Sbjct: 184 IEYMHTRDMKAAYKQADGQKIDGRRV 209


>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 272

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDY 292
           ++++VG L +     DL ++F+ FG++ D  +          GYGF+ F DY
Sbjct: 12  TKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDY 63


>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
           protein low similarity to SP|Q03251 Glycine-rich
           RNA-binding protein 8 (CCR1 protein) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 181

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRI---RDILIK-----NGYGFVEFEDYRDADDAVY 316
           +++YV GL F   E  L   F+ FG +     ++ K      G+ F+ +E   +A  A+ 
Sbjct: 77  TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query: 317 ELNGKELLGERVVVEPAR 370
            ++GK L G  + VE A+
Sbjct: 137 GMHGKFLDGRVIFVEEAK 154


>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 438

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYEL 322
           +++VG LP  V E +++  F  +G I+D+ I         G  F+++E    A  A+  L
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169

Query: 323 NGKELLGERVVVEPARGIDRSADRYRR 403
           NG+ ++    V    +  D   +R  R
Sbjct: 170 NGRHIMEGANVPLIVKWADTEKERQAR 196



 Score = 32.3 bits (70), Expect = 0.31
 Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
 Frame = +2

Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDIL--------IKNGYGFVEFEDYRDADDAV 313
           G+ +++  +P    +++L   F+ FG++            I   +GF+ ++    A +A+
Sbjct: 338 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 397

Query: 314 YELNGKELLGERVVVEPAR 370
             +NG +L G+++ V+  R
Sbjct: 398 NTMNGCQLSGKKLKVQLKR 416


>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
           Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
           protein [Homo sapiens] GI:15341327; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 429

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYEL 322
           +++VG LP  V E +++  F  +G I+D+ I         G  F+++E    A  A+  L
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160

Query: 323 NGKELLGERVVVEPARGIDRSADRYRR 403
           NG+ ++    V    +  D   +R  R
Sbjct: 161 NGRHIMEGANVPLIVKWADTEKERQAR 187



 Score = 32.3 bits (70), Expect = 0.31
 Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
 Frame = +2

Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDIL--------IKNGYGFVEFEDYRDADDAV 313
           G+ +++  +P    +++L   F+ FG++            I   +GF+ ++    A +A+
Sbjct: 329 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 388

Query: 314 YELNGKELLGERVVVEPAR 370
             +NG +L G+++ V+  R
Sbjct: 389 NTMNGCQLSGKKLKVQLKR 407


>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
           protein
          Length = 830

 Score = 34.3 bits (75), Expect = 0.077
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
 Frame = +2

Query: 194 VRERDLEKFFKGFGRIRDILI---KNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 364
           V   +L + F  +G IR+I     +  + F+E+ D RDA+ A+  LN  E+ G+ + +E 
Sbjct: 281 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 340

Query: 365 AR 370
           +R
Sbjct: 341 SR 342


>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
           protein
          Length = 843

 Score = 34.3 bits (75), Expect = 0.077
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
 Frame = +2

Query: 194 VRERDLEKFFKGFGRIRDILI---KNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEP 364
           V   +L + F  +G IR+I     +  + F+E+ D RDA+ A+  LN  E+ G+ + +E 
Sbjct: 294 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 353

Query: 365 AR 370
           +R
Sbjct: 354 SR 355


>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 34.3 bits (75), Expect = 0.077
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI-KN-------GYGFVEFEDYRDADDAVYE 319
           ++ +  LPF  +  D++  F   G + D+ I KN       G+ FV+F   +DA +A+ +
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKK 391

Query: 320 LNGKELLGERVV 355
            NG  + G+R +
Sbjct: 392 FNG-HMFGKRPI 402



 Score = 31.1 bits (67), Expect = 0.72
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 578 QHRNEGVVEFATHSDMRAAIEKLDGTELNGRRV 676
           +HR    V+FA   D+  AIE  +G+ + GRR+
Sbjct: 59  EHRGFAFVKFALQEDVNRAIELKNGSTVGGRRI 91


>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           G3BP ras-GTPase-activating protein SH3-domain binding
           protein, Mus musculus, EMBL:MMU65313
          Length = 459

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
 Frame = +2

Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIR--DILIKNG-----YGFVEFE 286
           G  +YV  LPF      LE+ FK FG I+   I +++      +GFVEFE
Sbjct: 292 GHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQGFCFGFVEFE 341


>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
           protein / RNA recognition motif (RRM)-containing protein
           similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
           {Escherichia coli O157:H7}; contains Pfam profiles
           PF01743: polyA polymerase family protein, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 881

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI---KNGY----GFVEFEDYRDADDAVYELN 325
           +YV  LP   +  D+  FFK  G++  + +   +NG     GFVEF    +A  A+   N
Sbjct: 566 LYVCCLPRDTKMPDIIDFFKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMKN 625

Query: 326 GKELLGERVVV 358
           G+ L G ++++
Sbjct: 626 GEYLCGNKLIL 636


>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 304

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI---KN-----GYGFVEFEDYRDADDAVY 316
           ++++VGGL +  +   + ++F+ FG I + ++   KN     GYGFV F++   A  A  
Sbjct: 22  TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81

Query: 317 ELN 325
            +N
Sbjct: 82  NMN 84


>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
           PABP, putative 
          Length = 609

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYELN 325
           V+V  LP  V    L+  FK FG I    +         GYGFV+FE    A  A+  LN
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173

Query: 326 GKELLGERVVV 358
              +  + + V
Sbjct: 174 STIVADKEIYV 184



 Score = 32.7 bits (71), Expect = 0.23
 Identities = 37/181 (20%), Positives = 72/181 (39%), Gaps = 11/181 (6%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKN-------GYGFVEFEDYRDADDAVYE 319
           + +Y+  L   V E  L + F  FG+I  + I         GY FV F++  DA  A   
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260

Query: 320 LNGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENL 499
           +NG +   + + V  A+         ++ +R                       + V+N+
Sbjct: 261 VNGTKFGSKCLYVGRAQ---------KKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNV 311

Query: 500 SSRISWQDLKDYMRQAGEVT----YADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNG 667
           +  ++ ++L+ +  Q G +T      D   + +  G V F+T  +   A++   G   +G
Sbjct: 312 NVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHG 371

Query: 668 R 670
           +
Sbjct: 372 K 372



 Score = 31.5 bits (68), Expect = 0.54
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYE 319
           S +YV  +   V E +L K F   G I    +         G+GFV F    +A DAV  
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363

Query: 320 LNGKELLGERVVVEPAR 370
            +G+   G+ + V  A+
Sbjct: 364 FHGQMFHGKPLYVAIAQ 380


>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
           protein 
          Length = 809

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +2

Query: 467 RTEYRLIVENLSSRISWQDLKDYMRQAGEVTYA-----DAHKQHRNEGVVEFATHSDMRA 631
           R E+ + V +L    S +DLK      GEVT          K+ +    + FAT    + 
Sbjct: 211 RKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKR 270

Query: 632 AIEKLDGTELNGRR 673
           A+++L    +NG++
Sbjct: 271 AVKELKSPMINGKK 284


>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 536

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +2

Query: 200 ERDLEKFFKGFGRIRDILI----KNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPA 367
           E D+  +F  +G + D+ I    K  YGFV F         + + N   +   RV+V+P 
Sbjct: 331 EHDVSIYFTSYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPY 390

Query: 368 RGIDRSADRY 397
           R   RS+ RY
Sbjct: 391 REKSRSS-RY 399


>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           G3BP ras-GTPase-activating protein SH3-domain binding
           protein, Mus musculus, EMBL:MMU65313
          Length = 460

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
 Frame = +2

Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIR--DILIKNG------YGFVEFE 286
           G  +YV  LPF      LE+ FK FG I+   I +++       +GFVEFE
Sbjct: 292 GHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFE 342


>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
           PABP, putative similar to polyadenylate-binding protein
           (poly(A)-binding protein) from {Arabidopsis thaliana}
           SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
           SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 537

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 6/178 (3%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI------KNGYGFVEFEDYRDADDAVYEL 322
           + +YV  L   +    LE+ F  FG I    +        G+GFV+F+  + A  A   L
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSAL 171

Query: 323 NGKELLGERVVVEPARGIDRSADRYRRGDRHXXXXXXXXXXXXXXPPTRTEYRLIVENLS 502
           +G  + G+++ V  A+ I++       G++                 T    + ++E ++
Sbjct: 172 HGSMVYGKKLFV--AKFINKDERAAMAGNQ---------------DSTNVYVKNLIETVT 214

Query: 503 SRISWQDLKDYMRQAGEVTYADAHKQHRNEGVVEFATHSDMRAAIEKLDGTELNGRRV 676
                     Y   +  V   D   + R  G V F    + + A+E L G +L  +++
Sbjct: 215 DDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKL 272



 Score = 32.3 bits (70), Expect = 0.31
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI-------KNGYGFVEFEDYRDADDAVYE 319
           S +YV  L   + E  L + F  +G+I    +         G+GFV F +  ++  A   
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRY 363

Query: 320 LNGKELLGERVVVEPARGIDRSADRYRR 403
           LNG  + G+ +VV  A   +R  DR +R
Sbjct: 364 LNGFLVDGKPIVVRVA---ERKEDRIKR 388


>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM); similar to
           GB:AAC33496
          Length = 347

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 310
           ++V+VGGL +   +  ++K F+ FG I + ++          GYGFV F +   A  A
Sbjct: 13  TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70


>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM); similar to
           GB:AAC33496
          Length = 242

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 310
           ++V+VGGL +   +  ++K F+ FG I + ++          GYGFV F +   A  A
Sbjct: 13  TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70


>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM); similar to
           GB:AAC33496
          Length = 249

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 310
           ++V+VGGL +   +  ++K F+ FG I + ++          GYGFV F +   A  A
Sbjct: 13  TKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70


>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
           protein similar to GB:L02953 from [Xenopus laevis]
           (Nucleic Acids Res. 21, 999-1006 (1993)); contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 369

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEF--EDYRD---AD 304
           +++VGGLP  + E +L+ +F  +G I +  I          G+GFV F  ED  D   +D
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217

Query: 305 DAVYELNGKELLGERVVVEPAR-GIDRSADRY 397
             V+EL  K++  +R   EP R G D S   Y
Sbjct: 218 GKVHELGDKQVEIKR--AEPKRTGRDNSFRSY 247


>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
           3G / eIF3g nearly identical to eukaryotic translation
           initiation factor 3g [Arabidopsis thaliana] GI:12407751
          Length = 294

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYEL 322
           V V  L    RE DL + F  FG +  + +          G+GFV F    DA  A+ +L
Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274

Query: 323 NG 328
           NG
Sbjct: 275 NG 276


>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
           protein low similarity to splicing factor SC35
           [Arabidopsis thaliana] GI:9843653; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 261

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 316
           S +YV  L F +   D+   F  FG++  + +          G  FV +    DA  A  
Sbjct: 57  STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116

Query: 317 ELNGKELLGERVVVEPARGIDRSAD 391
            ++ K L G ++ V  A    R+++
Sbjct: 117 SMDAKILNGRKLTVSIAADNGRASE 141


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = +2

Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYAD-----AHKQHRNEGVVEFATHSDMRAAIEKL 646
           L V++LS  ++   LK+     GEV + +     A    R  G VEF   +D   A   +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159

Query: 647 DGTELNGRRVR 679
           DG +++G+ V+
Sbjct: 160 DGAQIDGKVVK 170



 Score = 32.7 bits (71), Expect = 0.23
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVYEL 322
           ++V  L   V E  L++ F  FG +        R + +  G+G+VEF+   DA+ A   +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159

Query: 323 NGKELLGERV 352
           +G ++ G+ V
Sbjct: 160 DGAQIDGKVV 169


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = +2

Query: 482 LIVENLSSRISWQDLKDYMRQAGEVTYAD-----AHKQHRNEGVVEFATHSDMRAAIEKL 646
           L V++LS  ++   LK+     GEV + +     A    R  G VEF   +D   A   +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159

Query: 647 DGTELNGRRVR 679
           DG +++G+ V+
Sbjct: 160 DGAQIDGKVVK 170



 Score = 32.7 bits (71), Expect = 0.23
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVYEL 322
           ++V  L   V E  L++ F  FG +        R + +  G+G+VEF+   DA+ A   +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159

Query: 323 NGKELLGERV 352
           +G ++ G+ V
Sbjct: 160 DGAQIDGKVV 169


>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
           sylvestris]
          Length = 293

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI----KNG----YGFVEFEDYRDADDAVYE 319
           +VYVG LP+  +   L   F  FG I    +    K G    + F+ F    +  DA   
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEER-DAALS 271

Query: 320 LNGKELLGERVVVEPARGIDRS 385
            NG +  G R++V    GI++S
Sbjct: 272 FNGTQYEGRRIIVR--EGIEKS 291


>At4g35785.2 68417.m05083 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 141

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
 Frame = +2

Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDIL--------IKNGYGFVEFEDYRDADDAV 313
           G+ +YV GL   V ++DLE  F   G++            +  G+ FV     +DA+  +
Sbjct: 71  GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 130

Query: 314 YELNGKELLG 343
             LN   L G
Sbjct: 131 KYLNQSVLEG 140


>At4g35785.1 68417.m05082 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 140

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
 Frame = +2

Query: 158 GSRVYVGGLPFGVRERDLEKFFKGFGRIRDIL--------IKNGYGFVEFEDYRDADDAV 313
           G+ +YV GL   V ++DLE  F   G++            +  G+ FV     +DA+  +
Sbjct: 70  GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 129

Query: 314 YELNGKELLG 343
             LN   L G
Sbjct: 130 KYLNQSVLEG 139


>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 310

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 254 IKNGYGFVEFEDYRDADDAVYELNG 328
           +  GYGFVEFE +  AD  + E NG
Sbjct: 142 LSEGYGFVEFESHDVADKVLREFNG 166



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPA 367
           GYGFV F D  +   A+ E+NG +     + + PA
Sbjct: 240 GYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPA 274


>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 231

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           +++VGG+P  V E +L+ FF  +G + +  +          G+GFV F+     D+ + +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169

Query: 320 LN 325
            N
Sbjct: 170 GN 171


>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}; contains Pfam profile:
           PF00076 RNA recognition motif (aka RRM, RBD, or RNP
           domain)
          Length = 483

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRD--ILIKNGYGFVEFEDYRDADDAVYELNGKELL 340
           +YVGGL   V E+D+   F   G I    IL +    FV +     A+ A  EL+ + ++
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVV 289

Query: 341 -GERV 352
            G+R+
Sbjct: 290 NGQRL 294


>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
           PABP, putative similar to polyadenylate-binding protein
           (poly(A)-binding protein) from {Arabidopsis thaliana}
           SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
           sativus] GI:7528270; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 497

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN------GYGFVEFEDYRDADDAVYELN 325
           ++V  L   ++  D+  FFK  G +  + LI N      G+GFVEF    +A+ A+ + N
Sbjct: 249 LFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHAGWGFVEFASANEAEKALVK-N 307

Query: 326 GKELLGERVVVEPAR 370
           G+ L   ++ ++ A+
Sbjct: 308 GEYLHNYKISLDGAK 322



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
 Frame = +2

Query: 209 LEKFFKGFGRIRDI-LIKN------GYGFVEFEDYRDADDAVYELNGKELLGERVVV 358
           ++ FF G  ++  + L+ N      GYGFVEF     A+ A+ E NG+ L   ++++
Sbjct: 174 IKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKNGEYLHNHKILL 230


>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}, RNA Binding Protein 47
           [Nicotiana plumbaginifolia] GI:9663769; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 481

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRD--ILIKNGYGFVEFEDYRDADDAVYELNGKELL 340
           +YVGGL   + E+D+   F   G I    IL      FV +     A+ A  EL+ + ++
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVI 289

Query: 341 -GERV 352
            G+R+
Sbjct: 290 NGQRL 294


>At1g47370.1 68414.m05244 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 363

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 175 WWSPLWSKRERLGKVLQRFWKNQRHTYQE 261
           WW+   + R R+GKVL  FW+  +  +++
Sbjct: 327 WWNQTKTTRARIGKVLIHFWEKLKKKFKD 355


>At1g05510.1 68414.m00563 expressed protein
          Length = 241

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = +2

Query: 146 WKMVGSRVYVGGLPFGVRERDLEKFFKGFGRI 241
           W++ G  +++ G+P  ++ +DLEK  K +G++
Sbjct: 117 WEVKGGFLFMPGVPEAIQRQDLEKVAKTYGKV 148


>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
           putative / spliceosomal protein, putative similar to
           spliceosomal protein [Solanum tuberosum] GI:169589
          Length = 232

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFK---GFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 337
           +++  LP       L+  F+   GF  IR I  K G  FVE+ED   A  A+  L G ++
Sbjct: 160 LFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKI 219

Query: 338 LGERVVV 358
             +  +V
Sbjct: 220 TPQNPMV 226


>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
           identical to UBP1 interacting protein 1a [Arabidopsis
           thaliana] GI:19574236; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM); based on cDNA of partial mRNA for UBP1
           interacting protein 1a (uba1a) GI:19574235
          Length = 347

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           +++V GLP+      L   F+G+G I +  +          G+GFV F+  + A +A+ E
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164


>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
           identical to UBP1 interacting protein 1a [Arabidopsis
           thaliana] GI:19574236; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM); based on cDNA of partial mRNA for UBP1
           interacting protein 1a (uba1a) GI:19574235
          Length = 343

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
 Frame = +2

Query: 164 RVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVYE 319
           +++V GLP+      L   F+G+G I +  +          G+GFV F+  + A +A+ E
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164


>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
           putative
          Length = 506

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
 Frame = +2

Query: 200 ERDLEKFFKGFGRI--RDIL--IKNG----YGFVEFEDYRDADDAVYELNGKELLGERVV 355
           + DL   F  FG +   D++   K G    Y F+EFE+    + A ++++   +   R+ 
Sbjct: 256 DEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRIH 315

Query: 356 VEPARGIDRSADRYRRGD 409
           V+ ++ + +   ++R+ D
Sbjct: 316 VDFSQSVSKLWSQFRQKD 333


>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
           putative / spliceosomal protein, putative non-consensus
           splice donor GC at exon 4; similar to spliceosomal
           protein (U2B) GI:169588 from [Solanum tuberosum]
          Length = 228

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFK---GFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 337
           +++  LP       L+  F+   GF  IR I  K G  FVE+ED   +  A+  L G ++
Sbjct: 156 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKI 215

Query: 338 LGERVVV 358
             +  +V
Sbjct: 216 TPQNPMV 222


>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
           putative / spliceosomal protein, putative non-consensus
           splice donor GC at exon 4; similar to spliceosomal
           protein (U2B) GI:169588 from [Solanum tuberosum]
          Length = 229

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFK---GFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 337
           +++  LP       L+  F+   GF  IR I  K G  FVE+ED   +  A+  L G ++
Sbjct: 157 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKI 216

Query: 338 LGERVVV 358
             +  +V
Sbjct: 217 TPQNPMV 223


>At2g31985.1 68415.m03909 expressed protein
          Length = 241

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = +2

Query: 146 WKMVGSRVYVGGLPFGVRERDLEKFFKGFGRI 241
           W++ G  +++ G+P  ++ +DL+K  K +G++
Sbjct: 117 WEVKGGFLFMPGVPGAIQRKDLDKVAKTYGKV 148


>At1g79975.2 68414.m09353 expressed protein
          Length = 152

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 91  KIVDYLLVQL*IIVYYCLLENGWITSVCWW 180
           K +D+      I +++C++  GW +S+ WW
Sbjct: 88  KCLDFSATLYIIHLFFCIMYGGWPSSMAWW 117


>At1g79975.1 68414.m09352 expressed protein
          Length = 152

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 91  KIVDYLLVQL*IIVYYCLLENGWITSVCWW 180
           K +D+      I +++C++  GW +S+ WW
Sbjct: 88  KCLDFSATLYIIHLFFCIMYGGWPSSMAWW 117


>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGY 268
           +R+Y+  LP  V   +L+  F G G++  I  K GY
Sbjct: 280 ARIYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGY 315


>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILIKNGY 268
           +R+Y+  LP  V   +L+  F G G++  I  K GY
Sbjct: 280 ARIYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGY 315


>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
           protein low similarity to RNA-binding protein RGP-3
           [Nicotiana sylvestris] GI:1009363; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 156

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDAVY 316
           + ++V GL        L   F  FG + D  +          G+GFV +    D+   + 
Sbjct: 56  TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115

Query: 317 ELNGKELLGERVVVEPARGIDRS 385
            ++GK L G  +  E AR  ++S
Sbjct: 116 GMDGKFLDGWVIFAEYARPREQS 138



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
 Frame = +2

Query: 458 PPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQH-----RNEGVVEFATHSD 622
           P       L V  LS R + + L+    Q GEV  A           +  G V +AT  D
Sbjct: 50  PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLED 109

Query: 623 MRAAIEKLDGTELNG 667
               I  +DG  L+G
Sbjct: 110 SAKGIAGMDGKFLDG 124


>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 100

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDADDA 310
           +++YV GLP+  R   L  +F+ FG I    +          G+GFV F +   A  A
Sbjct: 9   TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66


>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
           protein similar to SP|P42731 Polyadenylate-binding
           protein 2 (Poly(A) binding protein 2) (PABP 2)
           {Arabidopsis thaliana}; contains INTERPRO:IPR000504
           RNA-binding region RNP-1 (RNA recognition motif) domain
          Length = 423

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +2

Query: 458 PPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNEGV----VEFATHSDM 625
           P    E  L V NLS +    D+  + +  GEV        H ++ V    VEF + ++ 
Sbjct: 121 PADFAEEVLFVANLSPQTKILDIFGFCQDVGEVVSVRLIANHEDKPVGCAFVEFLSANEA 180

Query: 626 RAAIEKLDGTELNGRRVRLV 685
           +  +E  +G   +G ++ L+
Sbjct: 181 KKVLENKNGEYFHGHKIILM 200


>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
           spliceosomal protein U1A / U1snRNP-specific protein
           identical to GB:Z49991 U1snRNP-specific protein
           [Arabidopsis thaliana]
          Length = 250

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFF---KGFGRIRDILIKNGYGFVEFEDYRDADDAVYELNGKEL 337
           ++V  LP       L+  F   +GF  +R I  K G  FVEF D   +  A+  L G ++
Sbjct: 179 LFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKI 238

Query: 338 LGERVVVEPAR 370
              ++++  A+
Sbjct: 239 QQNQMLITYAK 249


>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
           putative 
          Length = 333

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDI-LIKN-------GYGFVEFEDYRDADDAVYEL 322
           ++VG L     E  L +    +GRI+++ L+++       GYGFVE+E  ++   A  + 
Sbjct: 66  LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125

Query: 323 NGKELLGERVVVE 361
           +   + G  ++V+
Sbjct: 126 HHSLIDGREIIVD 138


>At5g45520.1 68418.m05591 hypothetical protein
          Length = 1167

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 647 PVSQWRPACPSASQILPHLHSCVVYGRQRKSLRQL 543
           PV   R   PS+ ++ PH+HS V+Y  +   L +L
Sbjct: 286 PVEDERKLLPSSYKMEPHVHSAVIYLAKEMDLFEL 320


>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
           3G, putative / eIF3g, putative similar to eukaryotic
           translation initiation factor 3g [Arabidopsis thaliana]
           GI:12407751; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 276

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVYEL 322
           V V  L    R  DL + F+ FG +        +   +  G+GFV F    DA  A+ +L
Sbjct: 176 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 235

Query: 323 NG 328
           NG
Sbjct: 236 NG 237


>At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing
           protein
          Length = 313

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = +2

Query: 152 MVGSRVYVGGLPFGVRERDLEKFFKGFGRI-----RDILIKNGYGFVEFEDYRDADDAVY 316
           M  + V V  +  G  +RDL++FF   G I     +    +    +V F+D + A+ AV 
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60

Query: 317 ELNGKELLGERVVVEPA 367
            L+G  ++   V+V  A
Sbjct: 61  -LSGATIVDSSVIVSMA 76


>At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative similar to SP|P52597
           Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
           {Homo sapiens}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 350

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
 Frame = +2

Query: 179 GLPFGVRERDLEKFFKGFGRIRDI--LIKNGYG------FVEFEDYRDADDAVYELNGKE 334
           GLPF   + D+  FFK F    D   +  NG G      FVEF +  D+  A+  +  ++
Sbjct: 268 GLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRPTGEAFVEFRNAEDSRAAM--VKDRK 325

Query: 335 LLGERVVVEPARGIDRSADRYRRG 406
            LG R +      ++   +   RG
Sbjct: 326 TLGSRYIELFPSSVEELEEALSRG 349


>At5g03480.1 68418.m00304 expressed protein  ; expression supported
           by MPSS
          Length = 321

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
 Frame = +2

Query: 209 LEKFFKGFGRIRDILIKNGY--------GFVEFEDYRDADDAVYELNGKELLGERVVVEP 364
           LEK F   G IR + +   Y         F+  E    A+D   +L+G +++G  V+V+P
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEG-EGAEDKALQLSGTDVVGWTVIVKP 191

Query: 365 A 367
           +
Sbjct: 192 S 192


>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
           protein low similarity to nucleolar phosphoprotein
           (Nopp52), Tetrahymena thermophila, EMBL:TT51555;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 597

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKG-------FGRIRDILIKNGYGFVEFED 289
           +RVY+G L +   ERD+ K F          G+ ++     GY  V+F+D
Sbjct: 262 NRVYIGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKGYAHVDFKD 311



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 152 MVGSRVYVGGLPFGVRERDLEKFFKGFGRI 241
           +V +++YVGG+P+   E ++  +F+  G I
Sbjct: 158 VVPNKLYVGGIPYQSTEDEIRSYFRSCGVI 187


>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
           protein low similarity to RRM-containing protein SEB-4
           [Xenopus laevis] GI:8895698; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 261

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
 Frame = +2

Query: 161 SRVYVGGLPFGVRERDLEKFFKGFGRIRDILI--------KNGYGFVEFEDYRDA----D 304
           ++V+VGGL +   +  +   F  +G I + +I          GYGFV F+D + A    +
Sbjct: 17  TKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACE 76

Query: 305 DAVYELNGK 331
           D+   +NG+
Sbjct: 77  DSTPIINGR 85


>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
           Glycine-rich RNA-binding protein from {Sinapis alba}
           SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
           thaliana} SP|Q03251; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 117

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
 Frame = +2

Query: 170 YVGGLPFGVRERDLEKFFKGFGRI--------RDILIKNGYGFVEFEDYRDADDAVYELN 325
           +V GL     E+DL   F  FG +        RD      +GFV FE+ +   DA+  ++
Sbjct: 10  FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69

Query: 326 GKE 334
            +E
Sbjct: 70  VEE 72


>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
           contains similarity to splicing factor; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 303

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
 Frame = +2

Query: 458 PPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNE-----GVVEFATHSD 622
           P     Y L+V N++ R +  DL     + G+V      +  R         V +    +
Sbjct: 10  PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69

Query: 623 MRAAIEKLDGTELNGRRV 676
              A+E+LDG  ++GR +
Sbjct: 70  AHKAVERLDGRVVDGREI 87


>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
           contains similarity to splicing factor; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 303

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
 Frame = +2

Query: 458 PPTRTEYRLIVENLSSRISWQDLKDYMRQAGEVTYADAHKQHRNE-----GVVEFATHSD 622
           P     Y L+V N++ R +  DL     + G+V      +  R         V +    +
Sbjct: 10  PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69

Query: 623 MRAAIEKLDGTELNGRRV 676
              A+E+LDG  ++GR +
Sbjct: 70  AHKAVERLDGRVVDGREI 87


>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
            protein / RNA recognition motif (RRM)-containing protein
            contains Pfam profiles PF00076: RNA recognition motif.
            (a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
            transport factor 2 (NTF2) domain
          Length = 1294

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = +2

Query: 167  VYVGGLPFGVRERDLEKFFKGFGRIR--DILIKN----GYGFVEFEDYRDADDAV 313
            + V  LP       +E  FK FG IR   + ++N     YGFVEF++   A  A+
Sbjct: 1078 ICVKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSFSYGFVEFKEENAAQRAI 1132


>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
           similar to gb|U90212 DNA binding protein ACBF from
           Nicotiana tabacum and contains 3 PF|00076 RNA
           recognition motif domains. ESTs gb|T44278, gb|R65195,
           gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
           gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
          Length = 306

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPA---RGIDRSADRYR 400
           GYGFV F D  +   A+ E+NG       + + PA   +G+    D Y+
Sbjct: 198 GYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQ 246


>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 501

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 167 VYVGGLPFGVRERDLEKFFKGFGRIRDILIKN 262
           V+VG LP  V+++ + K F  FG +  + I++
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRS 204


>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
           RNA-binding protein from [Solanum tuberosum]
           GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
           sylvestris] GI:624925; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 309

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 584 RNEGVVEFATHSDMRAAIEKLDGTELNGRRVRL 682
           R  G V F +     +AI+ LDG +L+GR V++
Sbjct: 81  RGFGFVTFTSSEAASSAIQALDGRDLHGRVVKV 113


>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 986

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 147 GKWLDHECMLVVSPLE*ERETW 212
           GKW D E +L++  LE  +E W
Sbjct: 365 GKWTDQETLLLLEALEIFKENW 386


>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 983

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 147 GKWLDHECMLVVSPLE*ERETW 212
           GKW D E +L++  LE  +E W
Sbjct: 365 GKWTDQETLLLLEALEIFKENW 386


>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 985

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 147 GKWLDHECMLVVSPLE*ERETW 212
           GKW D E +L++  LE  +E W
Sbjct: 365 GKWTDQETLLLLEALEIFKENW 386


>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 985

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 147 GKWLDHECMLVVSPLE*ERETW 212
           GKW D E +L++  LE  +E W
Sbjct: 365 GKWTDQETLLLLEALEIFKENW 386


>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
           protein similar to ssRNA-binding protein [Dictyostelium
           discoideum] GI:1546894; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 245

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 263 GYGFVEFEDYRDADDAVYELNGKELLGERVV 355
           GYGFV F +  D   A+ E+NGK  +G R +
Sbjct: 179 GYGFVSFLNPADLAAALKEMNGK-YVGNRPI 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,173,766
Number of Sequences: 28952
Number of extensions: 249850
Number of successful extensions: 1217
Number of sequences better than 10.0: 211
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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