SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc10a07
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65360.1 68418.m08221 histone H3 identical to histone H3 from...   266   8e-72
At5g10400.1 68418.m01206 histone H3 identical to several histone...   266   8e-72
At5g10390.1 68418.m01205 histone H3 identical to histone H3 from...   266   8e-72
At3g27360.1 68416.m03421 histone H3 identical to histone H3 from...   266   8e-72
At1g09200.1 68414.m01027 histone H3 identical to histone H3 from...   266   8e-72
At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2, M...   265   2e-71
At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,...   265   2e-71
At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,...   265   2e-71
At5g65350.1 68418.m08220 histone H3 nearly identical to histone ...   256   2e-68
At1g75600.1 68414.m08784 histone H3.2, putative strong similarit...   256   2e-68
At1g13370.1 68414.m01554 histone H3, putative strong similarity ...   251   3e-67
At1g19890.1 68414.m02494 histone H3, putative similar to histone...   239   2e-63
At5g12910.1 68418.m01481 histone H3, putative similar to histone...   193   9e-50
At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12) si...   113   2e-25
At5g66410.1 68418.m08376 expressed protein                             30   1.9  
At2g33670.1 68415.m04126 seven transmembrane MLO family protein ...    28   5.8  
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni...    28   7.6  
At2g44210.1 68415.m05502 expressed protein  Pfam profile PF03080...    28   7.6  
At1g18350.1 68414.m02293 mitogen-activated protein kinase kinase...    28   7.6  

>At5g65360.1 68418.m08221 histone H3 identical to histone H3 from
           Zea mays SP|P05203, Medicago sativa GI:166384,
           Encephalartos altensteinii SP|P08903, Pisum sativum
           SP|P02300; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 136

 Score =  266 bits (653), Expect = 8e-72
 Identities = 129/136 (94%), Positives = 135/136 (99%)
 Frame = +1

Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 475 MPKDIQLARRIRGERA 522
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>At5g10400.1 68418.m01206 histone H3 identical to several histone H3
           proteins, including Zea mays SP|P05203, Medicago sativa
           GI:166384, Encephalartos altensteinii SP|P08903, Pisum
           sativum SP|P02300; contains Pfam profile PF00125 Core
           histone H2A/H2B/H3/H4
          Length = 136

 Score =  266 bits (653), Expect = 8e-72
 Identities = 129/136 (94%), Positives = 135/136 (99%)
 Frame = +1

Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 475 MPKDIQLARRIRGERA 522
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>At5g10390.1 68418.m01205 histone H3 identical to histone H3 from
           Zea mays SP|P05203, Medicago sativa GI:166384,
           Encephalartos altensteinii SP|P08903, Pisum sativum
           SP|P02300; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 136

 Score =  266 bits (653), Expect = 8e-72
 Identities = 129/136 (94%), Positives = 135/136 (99%)
 Frame = +1

Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 475 MPKDIQLARRIRGERA 522
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>At3g27360.1 68416.m03421 histone H3 identical to histone H3 from
           Zea mays SP|P05203, Medicago sativa GI:166384,
           Encephalartos altensteinii SP|P08903, Pisum sativum
           SP|P02300; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 136

 Score =  266 bits (653), Expect = 8e-72
 Identities = 129/136 (94%), Positives = 135/136 (99%)
 Frame = +1

Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 475 MPKDIQLARRIRGERA 522
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>At1g09200.1 68414.m01027 histone H3 identical to histone H3 from
           Zea mays SP|P05203, Medicago sativa GI:166384,
           Encephalartos altensteinii SP|P08903, Pisum sativum
           SP|P02300; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 136

 Score =  266 bits (653), Expect = 8e-72
 Identities = 129/136 (94%), Positives = 135/136 (99%)
 Frame = +1

Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 475 MPKDIQLARRIRGERA 522
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2,
           MINOR, Medicago sativa, SWISSPROT:P11105, histone H3
           variant H3.3 Lycopersicon esculentum GI:1435157;
           contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
          Length = 136

 Score =  265 bits (650), Expect = 2e-71
 Identities = 130/136 (95%), Positives = 134/136 (98%)
 Frame = +1

Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
           LLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 475 MPKDIQLARRIRGERA 522
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,
           minor Lolium temulentum SP|P11105, nearly identical to
           histone H3.2 Mus pahari GI:515005; contains Pfam profile
           PF00125 Core histone H2A/H2B/H3/H4
          Length = 136

 Score =  265 bits (650), Expect = 2e-71
 Identities = 130/136 (95%), Positives = 134/136 (98%)
 Frame = +1

Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
           LLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 475 MPKDIQLARRIRGERA 522
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,
           minor Lolium temulentum SP|P11105, nearly identical to
           histone H3.2 Mus pahari GI:515005; contains Pfam profile
           PF00125 Core histone H2A/H2B/H3/H4
          Length = 136

 Score =  265 bits (650), Expect = 2e-71
 Identities = 130/136 (95%), Positives = 134/136 (98%)
 Frame = +1

Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
           LLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 475 MPKDIQLARRIRGERA 522
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136


>At5g65350.1 68418.m08220 histone H3 nearly identical to histone H3
           from Zea mays SP|P05203, Medicago sativa GI:166384,
           Encephalartos altensteinii SP|P08903, Pisum sativum
           SP|P02300; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 139

 Score =  256 bits (626), Expect = 2e-68
 Identities = 123/136 (90%), Positives = 133/136 (97%)
 Frame = +1

Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
           MARTKQTAR STGGKAPRKQLA KAAR+SAP+TGGVKKPHR+RPGTVALR+IR+YQKSTE
Sbjct: 1   MARTKQTARISTGGKAPRKQLAPKAARQSAPATGGVKKPHRFRPGTVALRDIRKYQKSTE 60

Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
           +LIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  ILIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 475 MPKDIQLARRIRGERA 522
           MPK+IQLARRIRGERA
Sbjct: 121 MPKEIQLARRIRGERA 136


>At1g75600.1 68414.m08784 histone H3.2, putative strong similarity
           to histone H3.2 SP|P11105 GI:417103 from Lolium
           temulentum, histone H3.2 from Mus pahari GI:515005;
           contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
          Length = 136

 Score =  256 bits (626), Expect = 2e-68
 Identities = 125/136 (91%), Positives = 131/136 (96%)
 Frame = +1

Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
           MARTKQTARKS GGKAPR  LATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1   MARTKQTARKSHGGKAPRTLLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
           LLIRKLPFQRLVREIAQD+KTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 475 MPKDIQLARRIRGERA 522
           MPKD+QLARRIRGERA
Sbjct: 121 MPKDVQLARRIRGERA 136


>At1g13370.1 68414.m01554 histone H3, putative strong similarity to
           Histone H3.2, minor Medicago sativa SP|P11105, histone
           H3 Rubus idaeus GI:10732809; contains Pfam profile
           PF00125 Core histone H2A/H2B/H3/H4
          Length = 136

 Score =  251 bits (615), Expect = 3e-67
 Identities = 123/136 (90%), Positives = 130/136 (95%)
 Frame = +1

Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
           MARTKQ+ARKS GGKAP KQLATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTE
Sbjct: 1   MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
           LL RKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 475 MPKDIQLARRIRGERA 522
           MPKD+QLARRIR ERA
Sbjct: 121 MPKDVQLARRIRAERA 136


>At1g19890.1 68414.m02494 histone H3, putative similar to histone H3
           from Chlamydomonas reinhardtii GI:571470, Volvox carteri
           SP|P08437, histone H3.2 minor from Lolium temulentum
           SP|P11105; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 137

 Score =  239 bits (584), Expect = 2e-63
 Identities = 119/137 (86%), Positives = 127/137 (92%), Gaps = 1/137 (0%)
 Frame = +1

Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSA-PSTGGVKKPHRYRPGTVALREIRRYQKST 291
           MARTKQTARKSTGGK PRK+LATKAARK+  P  GGVK+ HR+RPGTVALREIR+YQKST
Sbjct: 1   MARTKQTARKSTGGKGPRKELATKAARKTRRPYRGGVKRAHRFRPGTVALREIRKYQKST 60

Query: 292 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVT 471
           +LLIRKLPFQRLVREIAQDFK DLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVT
Sbjct: 61  DLLIRKLPFQRLVREIAQDFKVDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 120

Query: 472 IMPKDIQLARRIRGERA 522
           IM KDIQLARRIRGERA
Sbjct: 121 IMSKDIQLARRIRGERA 137


>At5g12910.1 68418.m01481 histone H3, putative similar to histone H3
           from Mus musculus GI:51301, Gallus gallus GI:211859,
           Medicago sativa GI:166384, Pisum sativum SP|P02300;
           contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
          Length = 131

 Score =  193 bits (471), Expect = 9e-50
 Identities = 93/135 (68%), Positives = 115/135 (85%)
 Frame = +1

Query: 115 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 294
           MAR+ QTARK+TGGKAP    A +  + S P    +KKP+RY+PGTVALREIR+YQK+T+
Sbjct: 1   MARSNQTARKATGGKAPH--FAMRVWQHSTPP---LKKPYRYKPGTVALREIRKYQKTTD 55

Query: 295 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 474
           L+IRKLPFQRLV+EIAQ  K DLRFQ+ A+ ALQEA+EA++VG+FEDTNLCA+HAKR TI
Sbjct: 56  LVIRKLPFQRLVKEIAQSLKADLRFQTGAVSALQEAAEAFMVGMFEDTNLCAMHAKRSTI 115

Query: 475 MPKDIQLARRIRGER 519
           MPKDIQLA+R+RG+R
Sbjct: 116 MPKDIQLAKRLRGDR 130


>At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12)
           similar to histone H3 GB:X17141 GI:10795 from
           Tetrahymena pyriformis, GI:161790 from Tetrahymena
           thermophila; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 178

 Score =  113 bits (271), Expect = 2e-25
 Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 2/133 (1%)
 Frame = +1

Query: 124 TKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLI 303
           T+QT   ++     R+    K +R++ P  G  KK +RYRPGTVAL+EIR +QK T LLI
Sbjct: 45  TQQTNPTTSPATGTRR--GAKRSRQAMPR-GSQKKSYRYRPGTVALKEIRHFQKQTNLLI 101

Query: 304 RKLPFQRLVREIAQDFKTDL--RFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIM 477
               F R VR I          R+ + A+ ALQEA+E YLVGLF D+ LCAIHA+RVT+M
Sbjct: 102 PAASFIREVRSITHMLAPPQINRWTAEALVALQEAAEDYLVGLFSDSMLCAIHARRVTLM 161

Query: 478 PKDIQLARRIRGE 516
            KD +LARR+ G+
Sbjct: 162 RKDFELARRLGGK 174


>At5g66410.1 68418.m08376 expressed protein
          Length = 230

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +1

Query: 301 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMP 480
           +  L F  ++   A+D+K ++     A G+     E  L  L +D  L  +HA R+  + 
Sbjct: 10  LSNLAFGNVLAAAARDYKKEVLANEKAQGSRPVNEEVDLDELMDDPELEKLHADRIAALR 69

Query: 481 KDIQ 492
           ++++
Sbjct: 70  REVE 73


>At2g33670.1 68415.m04126 seven transmembrane MLO family protein /
           MLO-like protein 5 (MLO5) identical to MLO-like protein
           5 (AtMlo5) [Arabidopsis thaliana] SWISS-PROT:O22815;
           similar to MLO protein SWISS-PROT:P93766,
           NCBI_gi:1877221 [Hordeum vulgare][Barley]
          Length = 501

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 179 ASCLRGALPPVDLRAVCLVRAIVYFFNVFH 90
           A C +G +P + L A+  V   ++F  VFH
Sbjct: 132 AQCKKGYVPLISLNALHQVHIFIFFLAVFH 161


>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
           (CSN6A) identical to CSN complex subunit 6A [Arabidopsis
           thaliana] GI:18056665, COP9 complex subunit 6
           [Arabidopsis thaliana] GI:15809663; contains Pfam
           profile PF01398: Mov34/MPN/PAD-1 family; identical to
           cDNA CSN complex subunit 6A (CSN6A) GI:18056664
          Length = 317

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = -1

Query: 528 NLSTFTTDSSSKLN---ILRHDGHTFGVNSTQVGVFEQANEISLACLLESSDGGRLETQI 358
           N+S   T   ++LN    +   GH  G N+ +  +F+Q N     C++    G  +E   
Sbjct: 20  NISDHYTRVKTQLNPPASICASGH--GSNNGEA-MFQQ-NPRVYGCVIGVQRGRTVEIFN 75

Query: 357 SFEILSDFSHKTLERQLTDKQ 295
           SFE+L D S +TL+R   +K+
Sbjct: 76  SFELLYDPSTQTLDRSFLEKK 96


>At2g44210.1 68415.m05502 expressed protein  Pfam profile PF03080:
           Arabidopsis proteins of unknown function
          Length = 415

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 564 YRITSNQNYN*TNLSTFTTDSSSKL-NILRHDGHTFGVNSTQVGVF 430
           YR +S +NY   N  +     SS+  N+L  +GH   +   + GVF
Sbjct: 133 YRASSVENYGMKNQKSIPKPKSSEPPNVLTQNGHQHAIMYVEDGVF 178


>At1g18350.1 68414.m02293 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK7) mitogen-activated protein
           kinase kinase (MAPKK) family, PMID:12119167
          Length = 307

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = -1

Query: 516 FTTDSSSKLNILRHDGHTFGVNSTQVGVFEQANEISLACLLESSDGGRLET---QISFEI 346
           FT   + ++ ILR     + V     G+FE+     ++ L+E  DGG LE+    ++ + 
Sbjct: 84  FTRQLAREMEILRRTDSPYVVRCQ--GIFEKPIVGEVSILMEYMDGGNLESLRGAVTEKQ 141

Query: 345 LSDFSHKTLE 316
           L+ FS + L+
Sbjct: 142 LAGFSRQILK 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,491,752
Number of Sequences: 28952
Number of extensions: 274794
Number of successful extensions: 666
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -