Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0033
(671 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator iden... 30 1.6
At1g35100.1 68414.m04351 hypothetical protein 29 2.1
At5g57210.1 68418.m07147 microtubule-associated protein-related ... 29 3.7
At3g05975.1 68416.m00682 hypothetical protein 29 3.7
At1g64830.1 68414.m07350 aspartyl protease family protein contai... 28 4.9
At1g56020.1 68414.m06431 expressed protein 28 4.9
At5g61560.1 68418.m07725 protein kinase family protein contains ... 28 6.5
At3g56410.2 68416.m06274 expressed protein 28 6.5
At3g56410.1 68416.m06273 expressed protein 28 6.5
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 28 6.5
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ... 28 6.5
At5g54080.2 68418.m06733 homogentisate 1,2-dioxygenase / homogen... 27 8.6
At5g54080.1 68418.m06732 homogentisate 1,2-dioxygenase / homogen... 27 8.6
At5g36035.1 68418.m04341 hypothetical protein 27 8.6
At4g19305.1 68417.m02845 hypothetical protein 27 8.6
At4g12700.1 68417.m01994 expressed protein 27 8.6
>At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator
identical to SEUSS transcriptional co-regulator
[Arabidopsis thaliana] gi|18033922|gb|AAL57277
Length = 877
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 11 VIFIIFLVLLVWMICARSTKRKEPKKTLTPAIDQNGSQVNFYYGA 145
++F L + W CAR + P++ L P + Q GS Y A
Sbjct: 443 IVFSPDLKIFSWEFCARRHEELIPRRLLIPQVSQLGSAAQKYQQA 487
>At1g35100.1 68414.m04351 hypothetical protein
Length = 231
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 155 YAESIAPSHHSTYAH--YYDDEEDGWEMPNFYNETYMKER 268
+ + P +YA YY+D D W + FYNE Y ER
Sbjct: 176 HISDLEPKRFGSYAELFYYEDYPDCWVIHEFYNE-YNGER 214
>At5g57210.1 68418.m07147 microtubule-associated protein-related
contains some similarity to microtubule-associated
protein GI:5032258 from [Arabidopsis thaliana]; contains
Pfam profile PF00566: TBC domain
Length = 737
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 281 VNGKMNSLARSNASIYGTKEDLYDRWKRHADPGKKEKTDSDGEGHRGASLENSGQSM 451
++GK L R ++ G +E + + D + KTDSD G SL+N+G+SM
Sbjct: 638 LSGKFQRLWRLGRNLSG-EETSETKEAKQVD-SEDGKTDSDSTSGPGDSLKNTGRSM 692
>At3g05975.1 68416.m00682 hypothetical protein
Length = 189
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 8 GVIFIIFLVLLVWMICARSTKRKEP-KKTLTPAIDQNGSQVNFYY 139
G+IF++F++ + +I A+ K K P +T++ +D + ++ Y
Sbjct: 12 GIIFVLFVIFMTALILAQVFKPKHPILQTVSSTVDGISTNISLPY 56
>At1g64830.1 68414.m07350 aspartyl protease family protein contains
Pfam domain, PF00026: eukaryotic aspartyl protease
Length = 431
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 398 YQSSLSYPGPRVSSTYRKDPPSFHRCWRLTSPSCS 294
YQ + P+ SSTYRK S +C L SCS
Sbjct: 121 YQQTSPLFDPKESSTYRKVSCSSSQCRALEDASCS 155
>At1g56020.1 68414.m06431 expressed protein
Length = 398
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 446 IDQNSPN*HPYALHRRYQSSLSYPGPRVSSTYRKDPPS 333
+D + P+ +P+A R + +L+ P R++ R PPS
Sbjct: 227 LDLDKPSANPFAPSRTHSRNLNQPRIRLAKPRRNHPPS 264
>At5g61560.1 68418.m07725 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 796
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +2
Query: 32 VLLVWMICARSTKRKEPK--KTLTPAIDQNGSQVNFYYGAHTPYAESIAPSHHSTYAHYY 205
++++ + CA KR P K + P +++ + A +A+++ HH+ H+Y
Sbjct: 674 MVMIGLRCAEMRKRDRPDLGKEILPVLERLKEVASI---ARNMFADNLIDHHHNAPTHFY 730
Query: 206 -DDEEDGWEMPNFYNETYMKER 268
+D E P ++ Y E+
Sbjct: 731 CPITKDVMENPCVASDGYTYEK 752
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 248 ETYM-KERLHNGVNGKMNSLARSNASIYGTKEDLYDRWKRHADPGKKEKTDSDGEG 412
ET++ K+ + V+ +M S + YGTKE +Y R +T DG G
Sbjct: 1006 ETFISKKNEDSSVSHQMESQNEDMENSYGTKEPVYPEGSRCESENSWAETMGDGAG 1061
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 248 ETYM-KERLHNGVNGKMNSLARSNASIYGTKEDLYDRWKRHADPGKKEKTDSDGEG 412
ET++ K+ + V+ +M S + YGTKE +Y R +T DG G
Sbjct: 959 ETFISKKNEDSSVSHQMESQNEDMENSYGTKEPVYPEGSRCESENSWAETMGDGAG 1014
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 27.9 bits (59), Expect = 6.5
Identities = 24/84 (28%), Positives = 32/84 (38%)
Frame = +2
Query: 212 EEDGWEMPNFYNETYMKERLHNGVNGKMNSLARSNASIYGTKEDLYDRWKRHADPGKKEK 391
EEDG E E LH+G +GKM + N S KED D + D + +
Sbjct: 173 EEDGDEEEERDVENVDSNSLHDGEDGKMALEEQDNVSHETEKEDDGD----YEDEDEDDD 228
Query: 392 TDSDGEGHRGASLENSGQSMNYFC 463
D D SL+ + C
Sbjct: 229 GDEDFTADEDVSLDEEEEEEIIAC 252
>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
contains Pfam domain PF02141: DENN (AEX-3) domain
Length = 976
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 407 HRRYQSSLSYPGPRVSSTYRKDPPSFHRCWR 315
HRR QS + PG R ++++++ + WR
Sbjct: 261 HRRTQSEIGTPGHRRTNSFQRLKTQMQKAWR 291
>At5g54080.2 68418.m06733 homogentisate 1,2-dioxygenase /
homogentisicase/homogentisate oxygenase / homogentisic
acid oxidase (HGO) identical to SP|Q9ZRA2 Homogentisate
1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase)
(Homogentisate oxygenase) (Homogentisic acid oxidase)
{Arabidopsis thaliana}; contains Pfam profile PF04209:
homogentisate 1,2-dioxygenase
Length = 461
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -1
Query: 446 IDQNSPN*HPYALHRRYQSSLSYPGPRV----SSTYRKDPPSFHRCWRLTSPS 300
+DQNSP PY L+ S S+ PR S YR P H ++ P+
Sbjct: 32 LDQNSPLLCPYGLYAEQISGTSFTSPRKLNQRSWLYRVKPSVTHEPFKPRVPA 84
>At5g54080.1 68418.m06732 homogentisate 1,2-dioxygenase /
homogentisicase/homogentisate oxygenase / homogentisic
acid oxidase (HGO) identical to SP|Q9ZRA2 Homogentisate
1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase)
(Homogentisate oxygenase) (Homogentisic acid oxidase)
{Arabidopsis thaliana}; contains Pfam profile PF04209:
homogentisate 1,2-dioxygenase
Length = 461
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -1
Query: 446 IDQNSPN*HPYALHRRYQSSLSYPGPRV----SSTYRKDPPSFHRCWRLTSPS 300
+DQNSP PY L+ S S+ PR S YR P H ++ P+
Sbjct: 32 LDQNSPLLCPYGLYAEQISGTSFTSPRKLNQRSWLYRVKPSVTHEPFKPRVPA 84
>At5g36035.1 68418.m04341 hypothetical protein
Length = 231
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 155 YAESIAPSHHSTYAH--YYDDEEDGWEMPNFYNETYMKER 268
+ + P +YA +Y+D D W + FYNE Y ER
Sbjct: 176 HISDLEPKRFGSYAELFHYEDYPDCWVIHEFYNE-YNGER 214
>At4g19305.1 68417.m02845 hypothetical protein
Length = 152
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 155 YAESIAPSHHSTYAH--YYDDEEDGWEMPNFYNETYMKER 268
+ + P +YA +Y+D D W + FYNE Y ER
Sbjct: 97 HISDLEPKRFGSYAELFHYEDYPDCWVIHEFYNE-YNGER 135
>At4g12700.1 68417.m01994 expressed protein
Length = 561
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Frame = +2
Query: 41 VWMICARSTKRKEPKKTLTPAIDQNGSQVNFYYGAHTPYAESIAPSHHSTYAHYYDDEED 220
VW + T TL I+Q N Y + P P H+ D+ +D
Sbjct: 440 VWPNLEKDTSPSSILSTLQDKIEQGR---NLYIATNEPELSFFNPLKDKYKPHFLDEFKD 496
Query: 221 GW-EMPNFYNET 253
W E +Y+ET
Sbjct: 497 LWDESSEWYSET 508
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,264,347
Number of Sequences: 28952
Number of extensions: 294529
Number of successful extensions: 917
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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