SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0018
         (358 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64370.1 68418.m08086 beta-ureidopropionase, putative / beta-...    56   5e-09
At4g25160.1 68417.m03622 protein kinase family protein contains ...    27   4.9  
At5g37930.1 68418.m04569 seven in absentia (SINA) family protein...    26   6.4  
At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical ...    26   6.4  
At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical ...    26   6.4  
At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical ...    26   6.4  
At5g41770.1 68418.m05086 crooked neck protein, putative / cell c...    26   8.5  
At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) near...    26   8.5  
At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) near...    26   8.5  

>At5g64370.1 68418.m08086 beta-ureidopropionase, putative /
           beta-alanine synthase, putative similar to beta-alanine
           synthase [Dictyostelium discoideum] GI:14334061;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 408

 Score = 56.4 bits (130), Expect = 5e-09
 Identities = 28/63 (44%), Positives = 40/63 (63%)
 Frame = -2

Query: 315 PDGVRCPGLSRTRDGLLIASVALTLNRQIKDTRCYYMPHRLDMYVNSLSKVLEMDYKPQV 136
           PD    P LSR +DGLLI+ + L L RQ KD   + M  R ++Y + L+K ++ D+KPQV
Sbjct: 338 PDASCTPSLSRYKDGLLISDMDLNLCRQYKDKWGFRMTARYEVYADLLAKYIKPDFKPQV 397

Query: 135 VHE 127
           V +
Sbjct: 398 VSD 400


>At4g25160.1 68417.m03622 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 835

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 161 SRWITSRRSYTKMKSNFKRSRSNNDHRN 78
           SRW   RR Y + K     S SN ++ N
Sbjct: 280 SRWTPRRRDYEERKEAMSSSSSNREYGN 307


>At5g37930.1 68418.m04569 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 349

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 118 LFIFVYDLRLVIHLEYFAETVHVHVQAVGHVITACVF 228
           L  FV++ RL I L+   +T  +  +  GHVI   VF
Sbjct: 227 LISFVWNTRLTISLDLNKKTTILQEENDGHVIVVQVF 263


>At3g53570.3 68416.m05915 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 453

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 242 RVKATDAINKPSLVRDRPGHLTPSGPN 322
           R KA +A+N P   R R   + P  PN
Sbjct: 417 RFKAREALNHPFFTRSREQSIPPFNPN 443


>At3g53570.2 68416.m05916 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 467

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 242 RVKATDAINKPSLVRDRPGHLTPSGPN 322
           R KA +A+N P   R R   + P  PN
Sbjct: 431 RFKAREALNHPFFTRSREQSIPPFNPN 457


>At3g53570.1 68416.m05917 protein kinase (AFC1) (AME2) identical to
           protein kinase AFC1 (EC 2.7.1.-) [Arabidopsis thaliana]
          Length = 467

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 242 RVKATDAINKPSLVRDRPGHLTPSGPN 322
           R KA +A+N P   R R   + P  PN
Sbjct: 431 RFKAREALNHPFFTRSREQSIPPFNPN 457


>At5g41770.1 68418.m05086 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 705

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 176 VSAKYSRWITSRRSYTKMKSNFKRSRSNNDHRN 78
           V  KY++W  S++ Y + +S ++R+    D+RN
Sbjct: 94  VWVKYAQWEESQKDYARARSVWERA-IEGDYRN 125


>At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) nearly
           identical to type II CPD photolyase PHR1 [Arabidopsis
           thaliana] GI:2984707; similar to class II DNA photolyase
           (GI:5081541) [Chlamydomonas reinhardtii]; supporting
           cDNA gi|2984706|gb|AF053365.1|AF053365
          Length = 496

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 249 LTLNRQIKDTRCYYMPH 199
           L + R++ D  CYY PH
Sbjct: 308 LIVRRELSDNFCYYQPH 324


>At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) nearly
           identical to type II CPD photolyase PHR1 [Arabidopsis
           thaliana] GI:2984707; similar to class II DNA photolyase
           (GI:5081541) [Chlamydomonas reinhardtii]; supporting
           cDNA gi|2984706|gb|AF053365.1|AF053365
          Length = 490

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 249 LTLNRQIKDTRCYYMPH 199
           L + R++ D  CYY PH
Sbjct: 308 LIVRRELSDNFCYYQPH 324


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,024,106
Number of Sequences: 28952
Number of extensions: 132939
Number of successful extensions: 428
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -