Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0041
         (314 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32820.1 68417.m04668 expressed protein ; expression supporte...    30   0.37 
At1g25480.1 68414.m03164 expressed protein contains Pfam profile...    27   3.5  

>At4g32820.1 68417.m04668 expressed protein ; expression supported
           by MPSS
          Length = 1817

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 16  LQEFGTRETIVCP*TNRRNSQNSYSFIVAASRVLTVLC 129
           L   GT E++V P T+ +NS  S+  +VA      +LC
Sbjct: 694 LDSTGTGESVVTPKTSSKNSSESWDHLVAEEVKAILLC 731


>At1g25480.1 68414.m03164 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 548

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 122 FCASGCSAQWKYQYNIG 172
           FC+ G +A WK  Y+IG
Sbjct: 38  FCSDGITASWKALYDIG 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,404,617
Number of Sequences: 28952
Number of extensions: 79030
Number of successful extensions: 139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)