Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0036
         (329 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27410.1 68418.m03272 aminotransferase class IV family protei...    29   1.00 
At3g01860.1 68416.m00130 expressed protein                             28   1.3  
At1g77530.1 68414.m09028 O-methyltransferase family 2 protein si...    28   1.3  
At3g05190.1 68416.m00566 aminotransferase class IV family protei...    27   3.0  
At1g76790.1 68414.m08936 O-methyltransferase family 2 protein si...    26   7.0  
At2g35310.1 68415.m04330 transcriptional factor B3 family protei...    25   9.3  
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica...    25   9.3  

>At5g27410.1 68418.m03272 aminotransferase class IV family protein
           contains Pfam profile: PF01063 aminotransferase class IV
          Length = 559

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 245 VTIEWKPPL--DDGGLELTKYAIEKHEPDN 328
           V  EWKPP+  +DGG+ L      ++ P+N
Sbjct: 373 VLAEWKPPVYDNDGGIVLVTATTRRNSPNN 402


>At3g01860.1 68416.m00130 expressed protein
          Length = 223

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 131 IEASNTAGTSSVEVTLKVYDKPSKPEG-PVIMREISRESVTIEWKPPLDDG 280
           + +S +  +S+ +  +K+    SKP+  P +  ++   S TI   PP+D G
Sbjct: 5   VSSSQSKSSSASDSVVKLASFISKPDSTPPLKTDVMITSSTINGNPPIDSG 55


>At1g77530.1 68414.m09028 O-methyltransferase family 2 protein
           similar to caffeic acid 3-O-methyltransferase GB:O23760
           [Clarkia breweri], [SP|Q00763] [Populus tremuloides]
          Length = 381

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 137 ASNTAGTSSVEVTLKVYDKPSKPEGPVIMREISR 238
           ASN    S  E+ + + +KP+ PE PV++  + R
Sbjct: 61  ASNGTWLSPSEIAVSLPNKPTNPEAPVLLDRMLR 94


>At3g05190.1 68416.m00566 aminotransferase class IV family protein
           contains Pfam profile: PF01063 aminotransferase class IV
          Length = 555

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 245 VTIEWKPPL--DDGGLELTKYAIEKHEPDN 328
           V  EWKPP+  ++GG+ L      ++ P+N
Sbjct: 376 VLAEWKPPVYDNEGGIVLVTATTRRNSPNN 405


>At1g76790.1 68414.m08936 O-methyltransferase family 2 protein
           similar to caffeic acid O-methyltransferase
           [Catharanthus roseus][GI:18025321], catechol
           O-methyltransferase GB:CAA55358 [Vanilla planifolia]
          Length = 367

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +2

Query: 125 YTIEASNTAGTSSV----EVTLKVYDKPSKPEGPVIMREISR 238
           Y     +  G+SS     E+ +++  KPS PE P ++  I R
Sbjct: 45  YLAARDDVTGSSSFLTPSEIAIRLPTKPSNPEAPALLDRILR 86


>At2g35310.1 68415.m04330 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 288

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 309 SMAYFVSSRPPSSKGGFHSIVT 244
           SM++  SSRPP  + G  S+ T
Sbjct: 124 SMSFMASSRPPKREQGIPSLAT 145


>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|P46100
           Transcriptional regulator ATRX {Homo sapiens}; contains
           PFam profiles PF00271: Helicase conserved C-terminal
           domain, PF00176: SNF2 family N-terminal domain;
           non-consensus GC donor splice site at exon boundary
           28614
          Length = 1457

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +3

Query: 36  VENDKEYNITTKEKTSVIRIK 98
           ++N++E  +T ++KT+ IR+K
Sbjct: 322 IDNERELALTEEQKTNYIRVK 342


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,594,078
Number of Sequences: 28952
Number of extensions: 82240
Number of successful extensions: 227
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)