Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0031
         (485 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   0.72 
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR...    28   2.9  
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR...    28   2.9  
At1g49870.1 68414.m05591 expressed protein ; expression supporte...    28   3.8  
At5g04160.1 68418.m00404 phosphate translocator-related low simi...    27   8.9  
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ...    27   8.9  
At1g07490.1 68414.m00802 expressed protein                             27   8.9  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 367 RRGPAPSLPWTLSPSP-ARKTACKSPLHWRNGTPKSI 474
           RR P+P      SPSP AR+    SPL+ RN +P  +
Sbjct: 369 RRSPSPPARRRRSPSPPARRRRSPSPLYRRNRSPSPL 405


>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 370 RGPAPSLPWTLSPSPARKTACKSPLHWRN 456
           R P PS+    S SP++ +  KSP+H R+
Sbjct: 272 RSPLPSVQKEGSKSPSKPSPAKSPIHTRS 300


>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 370 RGPAPSLPWTLSPSPARKTACKSPLHWRN 456
           R P PS+    S SP++ +  KSP+H R+
Sbjct: 272 RSPLPSVQKEGSKSPSKPSPAKSPIHTRS 300


>At1g49870.1 68414.m05591 expressed protein ; expression supported
           by MPSS
          Length = 828

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = -2

Query: 460 SRFASVMVTCMLSFSQATVRESRAATAPGHDVVSDSDTAATVVPGKSVSGICLERAVASS 281
           S  ASV+ TC L+ + A V   R  T     +VSD+ +      G  + G        + 
Sbjct: 330 SSLASVVATCGLNEALAEVSSQRGQTTSFEPIVSDTRSRRDSKFGSLMEGKTTRDGTETE 389

Query: 280 ALIINKHLI 254
              ++K+L+
Sbjct: 390 IPSLDKYLV 398


>At5g04160.1 68418.m00404 phosphate translocator-related low
           similarity to SP|P52178 Triose phosphate/phosphate
           translocator, non-green plastid, chloroplast precursor
           (CTPT) {Brassica oleracea},
           phosphoenolpyruvate/phosphate translocator precursor
           [Mesembryanthemum crystallinum] GI:9295275
          Length = 309

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 375 PGAVAALDSLTVACEKDSMQVTITLAKR 458
           P AV AL  +T+  E D + VT+TLAK+
Sbjct: 199 PIAVIALLPVTLFMEPDVISVTLTLAKQ 226


>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1003

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 476 AIDFGVPFRQCNGDLHAVFLAGDGERVQGSDG 381
           A+D+ VP    NG   A   + DG++ +GSDG
Sbjct: 403 AVDWAVPKNIYNGAADATTASADGDK-EGSDG 433


>At1g07490.1 68414.m00802 expressed protein 
          Length = 107

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 27  RTLSKKKTNPKTSHNKISSSVFPYTKQKTDTDYVYSSCA--QRNVVLVCKHCVSCVFMCP 200
           R+ S K + P +S + IS S     K+K      YSS A  Q+    + + CV+ +    
Sbjct: 46  RSSSTKCSVPSSSSSSISRS--SSKKEKGSITQKYSSLAKEQKGRFYIMRRCVAMLVCWH 103

Query: 201 KHD 209
           KHD
Sbjct: 104 KHD 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,378,894
Number of Sequences: 28952
Number of extensions: 207116
Number of successful extensions: 726
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)