Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0028
(447 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56700.1 68416.m06307 male sterility protein, putative simila... 61 3e-10
At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identica... 61 3e-10
At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to... 56 1e-08
At5g22500.1 68418.m02626 acyl CoA reductase, putative / male-ste... 55 3e-08
At3g44560.1 68416.m04789 acyl CoA reductase, putative similar to... 54 6e-08
At3g44540.1 68416.m04787 acyl CoA reductase, putative similar to... 51 4e-07
At5g22420.1 68418.m02615 acyl CoA reductase, putative similar to... 43 8e-05
At2g28760.2 68415.m03498 NAD-dependent epimerase/dehydratase fam... 33 0.12
At2g28760.1 68415.m03497 NAD-dependent epimerase/dehydratase fam... 33 0.12
At1g60110.1 68414.m06772 jacalin lectin family protein similar t... 29 1.4
At1g08200.1 68414.m00906 expressed protein 29 1.4
At5g59450.1 68418.m07451 scarecrow-like transcription factor 11 ... 28 3.3
At4g38850.1 68417.m05500 auxin-responsive protein / small auxin ... 28 3.3
At2g34460.1 68415.m04229 flavin reductase-related low similarity... 27 4.4
At2g21280.1 68415.m02533 expressed protein similar to YfhF (GI:2... 27 4.4
At5g06060.1 68418.m00671 tropinone reductase, putative / tropine... 27 5.8
At1g27520.1 68414.m03355 glycoside hydrolase family 47 protein S... 27 5.8
At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase fam... 27 7.6
At2g11623.1 68415.m01250 hypothetical protein 27 7.6
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 61.3 bits (142), Expect = 3e-10
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Frame = +1
Query: 160 FYDGKSVFITGATGFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERM-RKYLDQPIF 336
F +GKS +TGATGFL K +EKL I I++L+R K + +R+ + + +F
Sbjct: 80 FLEGKSYLVTGATGFLAKVLIEKLLRESLEIGKIFLLMRSKDQESANKRLYDEIISSDLF 139
Query: 337 SRIKYEHPEYF-----KKIIPISGDITAPKLGLCDEERNIL 444
+K H + +K+IP+ GDI LG+ E N++
Sbjct: 140 KLLKQMHGSSYEAFMKRKLIPVIGDIEEDNLGIKSEIANMI 180
>At3g11980.1 68416.m01482 male sterility protein 2 (MS2) identical
to male sterility protein 2 (MS2) SP:Q08891 (Arabidopsis
thaliana)
Length = 616
Score = 61.3 bits (142), Expect = 3e-10
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Frame = +1
Query: 160 FYDGKSVFITGATGFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERMR-KYLDQPIF 336
F GK ITG+TGFL K +EK+ P + IY+LI+ K ER++ + LD +F
Sbjct: 127 FLQGKKFLITGSTGFLAKVLIEKVLRMAPDVSKIYLLIKAKSKEAAIERLKNEVLDAELF 186
Query: 337 SRIKYEHPEYF-----KKIIPISGDITAPKLGL 420
+ +K H + K+IP++G+I +GL
Sbjct: 187 NTLKETHGASYMSFMLTKLIPVTGNICDSNIGL 219
>At3g44550.1 68416.m04788 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 402
Score = 55.6 bits (128), Expect = 1e-08
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Frame = +1
Query: 157 EFYDGKSVFITGATGFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERMR-KYLDQPI 333
+F K++ +TGATGFL K +VEK+ P + +Y+L+R +R+R + ++ +
Sbjct: 7 QFLRNKTILVTGATGFLAKVFVEKILRVQPNVKKLYLLVRASDNEAATKRLRTEVFEKEL 66
Query: 334 FSRIKYE------HPEYFKKIIPISGDITAPKLGLCD 426
F ++ + ++K++ + GDI +LG+ D
Sbjct: 67 FKVLRQNLGDEKLNTLLYEKVVSVPGDIATDQLGIND 103
>At5g22500.1 68418.m02626 acyl CoA reductase, putative /
male-sterility protein, putative similar to acyl CoA
reductase [Simmondsia chinensis] GI:5020215; contains
Pfam profile PF03015: Male sterility protein; identical
to cDNA male sterility 2-like protein GI:1491614
Length = 491
Score = 54.8 bits (126), Expect = 3e-08
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Frame = +1
Query: 157 EFYDGKSVFITGATGFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERMR-KYLDQPI 333
+F K++ ITGA GFL K VEK+ P + IY+L+R + +R+R + ++ +
Sbjct: 7 QFLGNKTILITGAPGFLAKVLVEKILRLQPNVKKIYLLLRAPDEKSAMQRLRSEVMEIDL 66
Query: 334 FSRIKYEHPE------YFKKIIPISGDITAPKLGLCDEE 432
F ++ E +KI+P+ GDI+ LGL D +
Sbjct: 67 FKVLRNNLGEDNLNALMREKIVPVPGDISIDNLGLKDTD 105
>At3g44560.1 68416.m04789 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 449
Score = 53.6 bits (123), Expect = 6e-08
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Frame = +1
Query: 160 FYDGKSVFITGATGFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERMR-KYLDQPIF 336
F K++ +TGATGFL K +VEK+ P + +Y+++R +R+R + ++ +F
Sbjct: 8 FLQNKTILVTGATGFLAKVFVEKILRVQPNVNKLYLVVRASDNEAATKRLRTEAFEKDLF 67
Query: 337 SRIKYE------HPEYFKKIIPISGDITAPKLGLCD 426
++ + +K++P++GDI LG+ D
Sbjct: 68 KVLRDNLGDEKLNTLLSEKVVPVAGDIAMDHLGMKD 103
>At3g44540.1 68416.m04787 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 433
Score = 50.8 bits (116), Expect = 4e-07
Identities = 28/95 (29%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Frame = +1
Query: 157 EFYDGKSVFITGATGFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERMR-KYLDQPI 333
+F K++ +TG GFL K +VEK+ P + +++L+R + +R + L++ +
Sbjct: 7 QFLHDKTILVTGVPGFLAKVFVEKILRIQPKVKKLFLLLRAADNESAMQRFHSEVLEKDL 66
Query: 334 FSRIKY----EHPEYF--KKIIPISGDITAPKLGL 420
F +K E+ + F +K++PI GDI+ LG+
Sbjct: 67 FRVLKNALGDENLKAFITEKVVPIPGDISVDNLGV 101
>At5g22420.1 68418.m02615 acyl CoA reductase, putative similar to
acyl CoA reductase [Simmondsia chinensis] GI:5020215;
contains Pfam profile PF03015: Male sterility protein
Length = 409
Score = 43.2 bits (97), Expect = 8e-05
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = +1
Query: 157 EFYDGKSVFITGATGFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEER 306
+F + +++ +TGA+GFL K VE++ P + +Y+L+R + E+R
Sbjct: 7 QFLENRTILVTGASGFLAKVLVERILRLQPNVKRLYLLVRASDKKSAEQR 56
>At2g28760.2 68415.m03498 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 343
Score = 32.7 bits (71), Expect = 0.12
Identities = 15/68 (22%), Positives = 34/68 (50%)
Frame = +1
Query: 160 FYDGKSVFITGATGFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERMRKYLDQPIFS 339
F + +TG GF+G V+KL + +++ D + +++ ++K++ P F
Sbjct: 27 FQSNMRILVTGGAGFIGSHLVDKLMQN----EKNEVIVADNYFTGSKDNLKKWIGHPRFE 82
Query: 340 RIKYEHPE 363
I+++ E
Sbjct: 83 LIRHDVTE 90
>At2g28760.1 68415.m03497 NAD-dependent epimerase/dehydratase family
protein similar to UDP-glucuronic acid decarboxylase
Uxs1p from Filobasidiella neoformans GI:14318327;
contains Pfam profile PF01370 NAD dependent
epimerase/dehydratase family
Length = 343
Score = 32.7 bits (71), Expect = 0.12
Identities = 15/68 (22%), Positives = 34/68 (50%)
Frame = +1
Query: 160 FYDGKSVFITGATGFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERMRKYLDQPIFS 339
F + +TG GF+G V+KL + +++ D + +++ ++K++ P F
Sbjct: 27 FQSNMRILVTGGAGFIGSHLVDKLMQN----EKNEVIVADNYFTGSKDNLKKWIGHPRFE 82
Query: 340 RIKYEHPE 363
I+++ E
Sbjct: 83 LIRHDVTE 90
>At1g60110.1 68414.m06772 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile PF01419
jacalin-like lectin domain
Length = 598
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +1
Query: 100 VISKMSHNGTLDEHYQTVREFYDGKSVFITGATGFLGKAYVEKLAYSCPGIVSIYILIRD 279
++ N DEH ++V +YD KS I G E + Y+ G + +
Sbjct: 66 ILQTFDINHKNDEHLESVEGYYDPKSDAIKGLQFKTNMRISELIGYANDGATKFSLAVEG 125
Query: 280 KK 285
KK
Sbjct: 126 KK 127
>At1g08200.1 68414.m00906 expressed protein
Length = 389
Score = 29.1 bits (62), Expect = 1.4
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = +1
Query: 175 SVFITGATGFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERMRKYLDQPIFSRIKYE 354
++ + GA GF+G EKL P V + DK E ++ + F RI +
Sbjct: 19 TICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVQWAGRIQFHRINIK 78
Query: 355 HPEYFKKIIPISGDITAPKLGLC 423
H + +I ++ D+T +C
Sbjct: 79 HDSRLEGLIKMA-DLTINLAAIC 100
>At5g59450.1 68418.m07451 scarecrow-like transcription factor 11
(SCL11) scarecrow-like 11, Arabidopsis thaliana,
EMBL:AF036307
Length = 610
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 55 LRKNCDQLQIIFKFRVISKMSHNGTLDE 138
L++ CDQ + F+F I+K TLDE
Sbjct: 388 LKRFCDQFNVPFEFNFIAKKWETITLDE 415
>At4g38850.1 68417.m05500 auxin-responsive protein / small auxin up
RNA (SAUR-AC1) identical to GP:546362 small auxin up RNA
{Arabidopsis thaliana}; belongs to auxin-induced
(indole-3-acetic acid induced) protein family
Length = 89
Score = 27.9 bits (59), Expect = 3.3
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 202 FLG-KAYVEKLAYSCP-GIVSIYILIRDKKGSNTEERMRKYLDQPIFSRIKYEHPEYFKK 375
FLG K + + + S P G +++Y+ D+K + YL+QP+F ++ + E F
Sbjct: 7 FLGAKQIIRRESSSTPRGFMAVYVGENDQKKKRYVVPV-SYLNQPLFQQLLSKSEEEFGY 65
Query: 376 IIPISGDITAP 408
P+ G +T P
Sbjct: 66 DHPMGG-LTIP 75
>At2g34460.1 68415.m04229 flavin reductase-related low similarity to
SP|P30043 Flavin reductase {Homo sapiens}
Length = 280
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 172 KSVFITGATGFLGKAYVEKL 231
K VF+ GATG GK VE+L
Sbjct: 47 KKVFVAGATGQTGKRIVEQL 66
>At2g21280.1 68415.m02533 expressed protein similar to YfhF
(GI:2804536) [Bacillus subtilis]
Length = 347
Score = 27.5 bits (58), Expect = 4.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 175 SVFITGATGFLGKAYVEKL 231
+V +TGATGF+G+ V++L
Sbjct: 47 TVSVTGATGFIGRRLVQRL 65
>At5g06060.1 68418.m00671 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 264
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 169 GKSVFITGATGFLGKAYVEKLA 234
GK+ +TG T +G+A VE+LA
Sbjct: 11 GKTALVTGGTRGIGRAVVEELA 32
>At1g27520.1 68414.m03355 glycoside hydrolase family 47 protein
Similar to gb|U04299 mannosyl-oligosaccharide
alpha-1,2-mannosidase from Mus musculus. ESTs gb|R84145
and gb|AA394707 come from this gene
Length = 574
Score = 27.1 bits (57), Expect = 5.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 242 HEYASFSTYAFPRNPVAPVIKT 177
H Y ++ TYAFP + + P+ K+
Sbjct: 47 HAYDNYMTYAFPHDELKPLTKS 68
>At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461,
Saccharopolyspora spinosa GI:15077647, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 664
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 163 YDGKSVFITGATGFLGKAYVEKLAYSCP 246
Y K++ ITGA GF+ +L S P
Sbjct: 4 YKPKNILITGAAGFIASHVANRLVRSYP 31
>At2g11623.1 68415.m01250 hypothetical protein
Length = 110
Score = 26.6 bits (56), Expect = 7.6
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +1
Query: 304 RMRKYLDQPIFSRIKYEHPEYFKK 375
++ +L +PI+ +++ E PE+FKK
Sbjct: 72 KISHHLTKPIWEQLQKESPEFFKK 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,802,191
Number of Sequences: 28952
Number of extensions: 197713
Number of successful extensions: 491
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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