Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0088
(518 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g25230.2 68417.m03631 zinc finger (C3HC4-type RING finger) fa... 54 8e-08
At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger) fa... 54 8e-08
At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger) fa... 53 1e-07
At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa... 40 0.001
At4g21660.1 68417.m03138 proline-rich spliceosome-associated (PS... 35 0.029
At1g77122.1 68414.m08984 expressed protein 31 0.47
At5g45010.1 68418.m05519 DSS1/SEM1 family protein contains Pfam ... 29 1.4
At3g50690.1 68416.m05546 leucine-rich repeat family protein 29 1.4
At2g18590.1 68415.m02165 transporter-related low similarity to s... 29 1.9
At1g75150.1 68414.m08729 expressed protein ; expression supporte... 29 1.9
At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family... 29 2.5
At1g61010.2 68414.m06870 cleavage and polyadenylation specificit... 29 2.5
At1g61010.1 68414.m06869 cleavage and polyadenylation specificit... 29 2.5
At5g55300.1 68418.m06891 DNA topoisomerase I identical to Swiss-... 28 4.3
At5g13420.1 68418.m01545 transaldolase, putative similar to tran... 28 4.3
At1g63450.1 68414.m07175 exostosin family protein contains Pfam ... 28 4.3
At5g19320.1 68418.m02302 RAN GTPase activating protein 2 (RanGAP... 27 5.7
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC... 27 5.7
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 27 5.7
At5g62950.1 68418.m07898 expressed protein 27 7.6
At5g22650.2 68418.m02647 expressed protein non-consensus AT dono... 27 7.6
At5g22650.1 68418.m02646 expressed protein non-consensus AT dono... 27 7.6
At3g29190.1 68416.m03661 terpene synthase/cyclase family protein... 27 7.6
At1g14280.1 68414.m01693 phytochrome kinase, putative contains s... 27 7.6
>At4g25230.2 68417.m03631 zinc finger (C3HC4-type RING finger)
family protein similar to autocrine motility factor
receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 578
Score = 53.6 bits (123), Expect = 8e-08
Identities = 28/94 (29%), Positives = 50/94 (53%)
Frame = +3
Query: 174 IQRVVFGQLRVSEAQRVKDKFWNYVFYKFIFIFGVINVQYMDEVMLWCSWFTLVGFLHLM 353
++ + FG L E +++ ++ NY+ YK F+ VI V LW W T++ L +
Sbjct: 78 LKTLFFGDLYDVETKKLVERLANYIIYKGTFLPLVIPPTIFQGV-LWTVWLTVLCTLKMF 136
Query: 354 GQLCKDRFEYLASSPNTARWVHVRLVGLLLGILA 455
L +DR E L +SP++ W + R+ +L +L+
Sbjct: 137 QALARDRLERLNASPSSTPWTYFRVYSVLFLVLS 170
>At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger)
family protein similar to autocrine motility factor
receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 578
Score = 53.6 bits (123), Expect = 8e-08
Identities = 28/94 (29%), Positives = 50/94 (53%)
Frame = +3
Query: 174 IQRVVFGQLRVSEAQRVKDKFWNYVFYKFIFIFGVINVQYMDEVMLWCSWFTLVGFLHLM 353
++ + FG L E +++ ++ NY+ YK F+ VI V LW W T++ L +
Sbjct: 78 LKTLFFGDLYDVETKKLVERLANYIIYKGTFLPLVIPPTIFQGV-LWTVWLTVLCTLKMF 136
Query: 354 GQLCKDRFEYLASSPNTARWVHVRLVGLLLGILA 455
L +DR E L +SP++ W + R+ +L +L+
Sbjct: 137 QALARDRLERLNASPSSTPWTYFRVYSVLFLVLS 170
>At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger)
family protein contains similarity to autocrine motility
factor receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 577
Score = 52.8 bits (121), Expect = 1e-07
Identities = 26/94 (27%), Positives = 49/94 (52%)
Frame = +3
Query: 174 IQRVVFGQLRVSEAQRVKDKFWNYVFYKFIFIFGVINVQYMDEVMLWCSWFTLVGFLHLM 353
++ + FG L E +++ ++ NY+ YK F+ V+ V LW W T++ L +
Sbjct: 78 LKTLFFGDLYAIETRKLVERLANYIIYKGTFLPFVVPRTVFQGV-LWTIWLTVLCTLKMF 136
Query: 354 GQLCKDRFEYLASSPNTARWVHVRLVGLLLGILA 455
L +DR + L +SP++ W + R+ L +L+
Sbjct: 137 QALARDRLDRLNASPSSTPWTYFRVYSALFMVLS 170
>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 492
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/104 (21%), Positives = 48/104 (46%)
Frame = +3
Query: 129 LINIAYCFLAVFGFLIQRVVFGQLRVSEAQRVKDKFWNYVFYKFIFIFGVINVQYMDEVM 308
L+N+ + L++ V G LR +E +R+ ++ W + + +F + + +
Sbjct: 46 LLNMCLVLMLSLWHLVKFVFLGSLREAEVERLNEQAWRELM-EILFAITIFRQDFSSGFL 104
Query: 309 LWCSWFTLVGFLHLMGQLCKDRFEYLASSPNTARWVHVRLVGLL 440
L+ LH + Q R EY+ ++P+ ++ H R+V +
Sbjct: 105 PLVVTLLLIKALHWLAQ---KRVEYIETTPSVSKLSHFRIVSFM 145
>At4g21660.1 68417.m03138 proline-rich spliceosome-associated (PSP)
family protein similar to SP|Q13435 Splicing factor 3B
subunit 2 (Spliceosome associated protein 145) (SAP 145)
(SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa
subunit) {Homo sapiens}; contains Pfam profiles PF04046:
PSP, PF04037: Domain of unknown function (DUF382)
Length = 584
Score = 35.1 bits (77), Expect = 0.029
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = -1
Query: 347 VQEADESKPRT-PQHHLVHVLNVDYSEDEDEFVEDIVPEL--VLDALSLRDPELTEDDAL 177
V A ESK T PQ + + ++Y ++ EF + E + + + R+P +E+D
Sbjct: 59 VSAASESKENTDPQPQVCEQIVIEYVPEQAEFEDGFNDEFKEIFEKFNFREPLASEEDGT 118
Query: 176 DQETEDGEEAVRYV 135
E+E+ E+ + V
Sbjct: 119 KDESEEKEDVKKKV 132
>At1g77122.1 68414.m08984 expressed protein
Length = 323
Score = 31.1 bits (67), Expect = 0.47
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -1
Query: 314 PQHHLVHVLNVDYSEDEDEFVEDIVPELVLDALS--LRDPELTEDDALDQETEDGEE 150
P+ + V L ++ E+E+E E ++PE + + L D E EDD D E ++ EE
Sbjct: 71 PKPNKVEELIIEEEEEEEEEEEIVLPEEIQENQDELLLDDEYDEDDDDDFEFDESEE 127
>At5g45010.1 68418.m05519 DSS1/SEM1 family protein contains Pfam
profile PF05160: DSS1/SEM1 family
Length = 73
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 299 VHVLNVDYSEDEDEFVEDIVPELVLDALSLRDPELT-EDDALDQETED 159
V V+ VD ED+DEF E + E L+ +++ L EDD D + D
Sbjct: 9 VEVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSD 56
>At3g50690.1 68416.m05546 leucine-rich repeat family protein
Length = 447
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -1
Query: 299 VHVLNVDYSEDEDEFVEDIVPELVLDALSLRDPELTEDDALDQETEDGEEAVR 141
+ +N D DE+E VED +P S P+ DD D E +D ++ R
Sbjct: 395 IEPINEDNDPDEEEEVEDDLPIPDQSLASSSRPKRKRDDDDDGEDDDDDDEER 447
>At2g18590.1 68415.m02165 transporter-related low similarity to
spinster membrane proteins from [Drosophila
melanogaster] GI:12003976, GI:12003972, GI:12003974,
GI:12003970; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 451
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 252 YKFIFIFGVINVQYMDEVMLWCSWFTLVGFLHLMGQLCKDRF 377
++ I + G++ + ++ W WF L+GF H L F
Sbjct: 225 FQIIVLQGIVGSVPWNAMLFWTMWFELIGFDHNQAALLNGIF 266
>At1g75150.1 68414.m08729 expressed protein ; expression supported
by MPSS
Length = 753
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 275 SEDEDEFVEDIVPELV--LDALSLRDPELTEDDALDQETEDGEEA 147
SEDED+ V+D E D ++ PE ED+ D++ ED A
Sbjct: 494 SEDEDDDVDDDDEERPEGADGEEVQKPEANEDEDEDEDEEDPSHA 538
>At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At3g25690,
At5g61090 [Arabidopsis thaliana]
Length = 681
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = -1
Query: 353 HQVQEADESKPRTPQHHLVHVLNVDYSEDEDEFVEDIVPE 234
H+ + D S+ +HH + ++ D D+ +ED E
Sbjct: 195 HETEAKDHSEGFETEHHRIECFETEHEIDADDHIEDFETE 234
>At1g61010.2 68414.m06870 cleavage and polyadenylation specificity
factor, putative similar to cleavage and polyadenylation
specificity factor 73 kDa subunit [Homo sapiens]
SWISS-PROT:Q9UKF6
Length = 693
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = -1
Query: 290 LNVDYSEDE-DEFVEDIVPELVLDALSLRDPELT--EDDALDQETEDGEEAVRYVY*CLY 120
+++ +S D + V D + L+L+ +S P++ E+DA+ E E+G++ + +Y L
Sbjct: 573 ISLQWSSDPISDMVSDSIVALILN-ISREVPKIVMEEEDAVKSEEENGKKVEKVIYALLV 631
Query: 119 IIF 111
+F
Sbjct: 632 SLF 634
>At1g61010.1 68414.m06869 cleavage and polyadenylation specificity
factor, putative similar to cleavage and polyadenylation
specificity factor 73 kDa subunit [Homo sapiens]
SWISS-PROT:Q9UKF6
Length = 693
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = -1
Query: 290 LNVDYSEDE-DEFVEDIVPELVLDALSLRDPELT--EDDALDQETEDGEEAVRYVY*CLY 120
+++ +S D + V D + L+L+ +S P++ E+DA+ E E+G++ + +Y L
Sbjct: 573 ISLQWSSDPISDMVSDSIVALILN-ISREVPKIVMEEEDAVKSEEENGKKVEKVIYALLV 631
Query: 119 IIF 111
+F
Sbjct: 632 SLF 634
>At5g55300.1 68418.m06891 DNA topoisomerase I identical to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 916
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 254 VEDIVPELVLDALSLRDPELTEDDALDQETEDGEEAVRYV 135
++++VP L + +T D+ L QET+DG+ + V
Sbjct: 723 LKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQKIV 762
>At5g13420.1 68418.m01545 transaldolase, putative similar to
transaldolase [Solanum tuberosum] gi|2078350|gb|AAB54016
Length = 438
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 514 VSFPAGKPHATATPNKAVEAASI-PRSRPTSRTCTQRAVLGD-DARYSNRSLHSCPIRC 344
+S A P AT +K+ ++S+ PRS R + RY+ RS+ S +RC
Sbjct: 4 ISNLANLPRATCVDSKSSSSSSVLPRSFVNFRALNAKLSSSQLSLRYNQRSIPSLSVRC 62
>At1g63450.1 68414.m07175 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 641
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 230 VLDALSLRDPELTEDDALDQETEDGEEAVRY 138
VLD SL E+ +D +D + E GEE RY
Sbjct: 188 VLDQDSLPKNEIDQDFIIDWDPETGEERYRY 218
>At5g19320.1 68418.m02302 RAN GTPase activating protein 2 (RanGAP2)
identical to RAN GTPase activating protein 2 GI:6708468
from [Arabidopsis thaliana]
Length = 545
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Frame = -1
Query: 293 VLNVDYSEDEDEFVEDIV------PELVLDALSLRDPELTEDDALDQETEDGE 153
+LN+D + +E +E++ PEL L AL DP+ EDD +++ ED E
Sbjct: 472 LLNIDGNIISEEGIEELKEIFKKSPEL-LGALDENDPDGEEDDDDEEDEEDEE 523
>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
Drosophila melanogaster, EMBL:AF186472
Length = 566
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 281 DYSEDEDEFVEDIVPELVLDALSLRDPELTEDDALDQ 171
DY +D ED+ ++ D L L D E E+D +++
Sbjct: 496 DYIKDSSRTSEDVNLSMLQDLLGLSDEEEEEEDEMEK 532
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = -1
Query: 284 VDYSEDEDEFVEDIVPELVLDALSLRDPELTEDDALDQETEDGEEAVRYV 135
V+Y E E+E +E+I E + + + + + E E+DA+ TE+ EE R+V
Sbjct: 37 VEYEEVEEEEIEEIEEE-IEEEVEVEEEE-EEEDAV--ATEEEEEKKRHV 82
>At5g62950.1 68418.m07898 expressed protein
Length = 139
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -1
Query: 302 LVHVLNVDYSEDEDEFVEDIVPELVLDALSLRDPELTEDDALDQETEDGEEA 147
+V +L + + D+ E D + ELV D L + D ++ETE+GE++
Sbjct: 88 IVELLPIIENLDDREIDTDGILELVKDLLPPLPTTASPKDDDEEETENGEQS 139
>At5g22650.2 68418.m02647 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 223
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -1
Query: 281 DYSEDEDEFVEDIVPELVLDALSLRDPELTEDDALDQETEDGEE 150
D S+DEDE ED E +D + EDD+ D E ED E+
Sbjct: 75 DESDDEDESEEDDDSEKGMD--------VDEDDSDDDEEEDSED 110
>At5g22650.1 68418.m02646 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 306
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -1
Query: 281 DYSEDEDEFVEDIVPELVLDALSLRDPELTEDDALDQETEDGEE 150
D S+DEDE ED E +D + EDD+ D E ED E+
Sbjct: 158 DESDDEDESEEDDDSEKGMD--------VDEDDSDDDEEEDSED 193
>At3g29190.1 68416.m03661 terpene synthase/cyclase family protein
contains Pfam profile: PF01397 terpene synthase family
Length = 519
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 225 KDKFWNYVFYKFIFI-FGVINVQYMDEVMLWCSWFTLVGFLHLMGQLCKDR 374
K+K N + KF + F + +QY+ E+ + W+ V F+ + +DR
Sbjct: 186 KEKDHNEMLLKFSKLNFKFLQLQYLQELKVLTKWYKEVDFVSKLPPYFRDR 236
>At1g14280.1 68414.m01693 phytochrome kinase, putative contains
similarity to Swiss-Prot:Q9SWI1 phytochrome kinase
substrate 1 [Arabidopsis thaliana]
Length = 442
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -1
Query: 296 HVLNVDYSEDEDEFVEDIVPELV-LDALSLR-DPELTEDDALDQETEDG 156
H +V Y E+ED V D+ +L +++L+ + +P L + D ++ DG
Sbjct: 270 HGFSVKYEEEEDGSVSDVSTDLFEIESLTGKANPFLARQGSSDPDSPDG 318
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,902,239
Number of Sequences: 28952
Number of extensions: 261728
Number of successful extensions: 962
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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