Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0082
         (300 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01950.1 68417.m00260 phospholipid/glycerol acyltransferase f...    29   0.58 
At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family...    29   0.58 
At3g54826.1 68416.m06072 zinc finger (DNL type) protein-related ...    25   9.4  
At1g02390.1 68414.m00185 phospholipid/glycerol acyltransferase f...    25   9.4  

>At4g01950.1 68417.m00260 phospholipid/glycerol acyltransferase
           family protein contains Pfam profile PF01553:
           Acyltransferase
          Length = 520

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 82  CYELYYLSRSTIS*WIWLPRSKVISKYIIHD 174
           C E+Y++ +S    W  LPRS+     I HD
Sbjct: 226 CQEIYFVKKSDKRSWQTLPRSQYPKPLIFHD 256


>At3g10010.1 68416.m01201 HhH-GPD base excision DNA repair family
           protein similar to DEMETER protein [Arabidopsis
           thaliana] GI:21743571; contains Pfam profile PF00730:
           HhH-GPD superfamily base excision DNA repair protein
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +3

Query: 198 ENDDF--LDSIDNNHLEGTNGSMNMTDNSLG 284
           E+++F  +D     H+EG++G  N+TD +LG
Sbjct: 265 EDEEFCGIDFTSAGHVEGSSGEENLTDTTLG 295


>At3g54826.1 68416.m06072 zinc finger (DNL type) protein-related
           contains weak hit to PF05180: DNL zinc finger
          Length = 193

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 204 DDFLDSIDNNHLEGTNGSMNMTDNSLGGG 290
           +DFL S      +G+  S+N+T   L GG
Sbjct: 160 EDFLASQGEEFKKGSMDSLNLTPEDLAGG 188


>At1g02390.1 68414.m00185 phospholipid/glycerol acyltransferase
           family protein contains Pfam profile PF01553:
           Acyltransferase
          Length = 530

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 82  CYELYYLSRSTIS*WIWLPRSKVISKYIIHD 174
           C E+Y++  S    W  LP+ +     I HD
Sbjct: 232 CQEIYFVRNSDKKSWQTLPQDQYPKPLIFHD 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,156,029
Number of Sequences: 28952
Number of extensions: 110045
Number of successful extensions: 225
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)