Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0065
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g25840.2 68415.m03101 tRNA synthetase class I (W and Y) famil... 128 3e-30
At2g25840.1 68415.m03100 tRNA synthetase class I (W and Y) famil... 128 3e-30
At2g25840.3 68415.m03102 tRNA synthetase class I (W and Y) famil... 117 1e-26
At2g33840.1 68415.m04153 tRNA synthetase class I (W and Y) famil... 31 0.61
At2g40070.1 68415.m04923 expressed protein 29 4.3
At1g79120.1 68414.m09226 hypothetical protein 29 4.3
At1g60160.1 68414.m06777 potassium transporter family protein si... 28 5.7
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 27 10.0
At2g36850.1 68415.m04519 glycosyl transferase family 48 protein ... 27 10.0
>At2g25840.2 68415.m03101 tRNA synthetase class I (W and Y) family
protein contains Pfam profile: PF00579 tRNA synthetases
class I (W and Y)
Length = 412
Score = 128 bits (310), Expect = 3e-30
Identities = 68/161 (42%), Positives = 95/161 (59%), Gaps = 2/161 (1%)
Frame = +3
Query: 267 RRVVSGIQPTGSLHVGNYFGAIRRCVRLQQQGNDLTLFIADLHSLTAQQNPEVLQNNILE 446
+RVVSG+QPTGS+H+GNY GAI+ V LQ L + I D H++T + L +
Sbjct: 65 KRVVSGVQPTGSVHLGNYLGAIKNWVALQDTYETLFI-IVDHHAITLPYDTRQLGKATTD 123
Query: 447 LTAYLLASGIDPEQSTFFVQSAVTRHAELCWLLACLATNARLAHLPQYKEKSAK--MKEV 620
A LA GID +++ FVQS V H EL WLL L + Q+KEKS K ++
Sbjct: 124 TAALYLACGIDVSKASVFVQSHVPAHVELMWLLCSSTPIGWLQKMIQFKEKSRKEGVENA 183
Query: 621 PIGLLLYPVLQAADVLIYRGTHVPVGADQIQHLQVASQLVK 743
+GL YP L AD+L+Y+ VPVG DQ QH+++A ++ +
Sbjct: 184 SVGLFTYPDLMTADILLYQSDFVPVGEDQKQHIELAREIAQ 224
>At2g25840.1 68415.m03100 tRNA synthetase class I (W and Y) family
protein contains Pfam profile: PF00579 tRNA synthetases
class I (W and Y)
Length = 408
Score = 128 bits (310), Expect = 3e-30
Identities = 68/161 (42%), Positives = 95/161 (59%), Gaps = 2/161 (1%)
Frame = +3
Query: 267 RRVVSGIQPTGSLHVGNYFGAIRRCVRLQQQGNDLTLFIADLHSLTAQQNPEVLQNNILE 446
+RVVSG+QPTGS+H+GNY GAI+ V LQ L + I D H++T + L +
Sbjct: 65 KRVVSGVQPTGSVHLGNYLGAIKNWVALQDTYETLFI-IVDHHAITLPYDTRQLGKATTD 123
Query: 447 LTAYLLASGIDPEQSTFFVQSAVTRHAELCWLLACLATNARLAHLPQYKEKSAK--MKEV 620
A LA GID +++ FVQS V H EL WLL L + Q+KEKS K ++
Sbjct: 124 TAALYLACGIDVSKASVFVQSHVPAHVELMWLLCSSTPIGWLQKMIQFKEKSRKEGVENA 183
Query: 621 PIGLLLYPVLQAADVLIYRGTHVPVGADQIQHLQVASQLVK 743
+GL YP L AD+L+Y+ VPVG DQ QH+++A ++ +
Sbjct: 184 SVGLFTYPDLMTADILLYQSDFVPVGEDQKQHIELAREIAQ 224
>At2g25840.3 68415.m03102 tRNA synthetase class I (W and Y) family
protein contains Pfam profile: PF00579 tRNA synthetases
class I (W and Y)
Length = 396
Score = 117 bits (281), Expect = 1e-26
Identities = 67/161 (41%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Frame = +3
Query: 267 RRVVSGIQPTGSLHVGNYFGAIRRCVRLQQQGNDLTLFIADLHSLTAQQNPEVLQNNILE 446
+RVVSG+QPTGS+H+GNY GAI+ V LQ L I D H+ T +
Sbjct: 65 KRVVSGVQPTGSVHLGNYLGAIKNWVALQDTYETL-FIIVDHHAATT------------D 111
Query: 447 LTAYLLASGIDPEQSTFFVQSAVTRHAELCWLLACLATNARLAHLPQYKEKSAK--MKEV 620
A LA GID +++ FVQS V H EL WLL L + Q+KEKS K ++
Sbjct: 112 TAALYLACGIDVSKASVFVQSHVPAHVELMWLLCSSTPIGWLQKMIQFKEKSRKEGVENA 171
Query: 621 PIGLLLYPVLQAADVLIYRGTHVPVGADQIQHLQVASQLVK 743
+GL YP L AD+L+Y+ VPVG DQ QH+++A ++ +
Sbjct: 172 SVGLFTYPDLMTADILLYQSDFVPVGEDQKQHIELAREIAQ 212
>At2g33840.1 68415.m04153 tRNA synthetase class I (W and Y) family
protein similar to SP|P54577 Tyrosyl-tRNA synthetase (EC
6.1.1.1) (Tyrosyl--tRNA ligase) (TyrRS) {Homo sapiens};
contains Pfam profile PF00579: tRNA synthetases class I
(W and Y)
Length = 385
Score = 31.5 bits (68), Expect = 0.61
Identities = 29/149 (19%), Positives = 65/149 (43%), Gaps = 7/149 (4%)
Frame = +3
Query: 282 GIQPTGSLHVGNYFGAIRRCVRLQQQGNDLTLFIADLHS-LTAQQNPEVLQNNILE--LT 452
G +P+G +H+ + ++ G + ++IAD + L + ++ + ++
Sbjct: 74 GFEPSGRMHIAQGVMKVINVNKMTSAGCRVKIWIADWFAQLNNKMGGDLKKIRVVGEYFQ 133
Query: 453 AYLLASGIDPEQSTFFVQSA-VTRHAELCW-LLACLATNARLAHLPQYKEKSAKMK--EV 620
A+G+D ++ F S + A+ W L+ +A +L + + + + + E+
Sbjct: 134 EIWKAAGMDNDKVEFLWSSEEINSKADKYWPLVMDIARKNKLPRILRCVQIMGRSETDEL 193
Query: 621 PIGLLLYPVLQAADVLIYRGTHVPVGADQ 707
+LYP +Q AD+ +G DQ
Sbjct: 194 SAAQILYPCMQCADIFFLEADICQLGMDQ 222
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/51 (39%), Positives = 23/51 (45%)
Frame = -1
Query: 547 ASSQHSSACLVTAD*TKNVLCSGSIPLANKYAVSSKILFCNTSGFCCAVKE 395
ASS +S T NV S S PLA SS+I CN +G C E
Sbjct: 539 ASSMYSVRSGHTRGRPMNV--SDSSPLATSSNASSEISVCNNNGICLEASE 587
>At1g79120.1 68414.m09226 hypothetical protein
Length = 413
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 475 LIQNRAHSSFSPLLQDMQSCAGCLHVWLLMPDWPIYPSI 591
+IQ + H S LL+D++ G +H W LM YP+I
Sbjct: 87 IIQAQKHGSL--LLRDLEKHVGFVHKWNLMAAIEKYPTI 123
>At1g60160.1 68414.m06777 potassium transporter family protein
similar to potassium transporter HAK2p [Mesembryanthemum
crystallinum] gi|14091471|gb|AAK53759; KUP/HAK/KT
Transporter family member, PMID:11500563; contains Pfam
profile PF02705: K+ potassium transporter
Length = 827
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = -3
Query: 611 HLSTLLFILG*MGQSGISSQTCKQPAQLCMSCNSGLNEECALFWIN 474
+L TLL +L MG S I PA MS SGL E F N
Sbjct: 213 YLKTLLLLLVLMGTSMIIGDGILTPAMSVMSAMSGLQGEVKGFGTN 258
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 27.5 bits (58), Expect = 10.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 608 LSTLLFILG*MGQSGISSQTCKQPAQLCMSCNSGLNEECALFWINTAC 465
+ST G G+ G +S+TC++P + SC+ + E + I AC
Sbjct: 316 ISTRYHKCGICGERGHNSRTCRKPTGVNPSCSGENSGEDGVGKITYAC 363
>At2g36850.1 68415.m04519 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1680
Score = 27.5 bits (58), Expect = 10.0
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = -1
Query: 613 FILALFSLYWGRWANLA--LVAK--HASSQHSSACLVTAD 506
F+++L+ L WG AN+A L AK H + + +CL D
Sbjct: 272 FLVSLYFLIWGEAANMAKELDAKLDHGEAVRADSCLTGTD 311
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,842,817
Number of Sequences: 28952
Number of extensions: 328821
Number of successful extensions: 817
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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