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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0055
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ...    98   4e-21
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s...    97   1e-20
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ...    93   2e-19
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t...    91   4e-19
At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ...    91   8e-19
At5g60520.1 68418.m07589 late embryogenesis abundant protein-rel...    30   1.2  
At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00...    28   4.7  
At2g17690.1 68415.m02048 F-box family protein contains F-box dom...    28   4.7  
At5g25520.2 68418.m03037 transcription elongation factor-related...    28   6.2  
At5g25520.1 68418.m03036 transcription elongation factor-related...    28   6.2  
At2g22530.1 68415.m02672 phosphatidylinositolglycan-related simi...    28   6.2  
At5g48520.1 68418.m05999 expressed protein similar to unknown pr...    27   8.2  
At4g30720.1 68417.m04354 expressed protein hypothetical protein ...    27   8.2  

>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 714

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 48/125 (38%), Positives = 78/125 (62%), Gaps = 2/125 (1%)
 Frame = +1

Query: 1   LMRAYTLSVLTRLANT--GNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVID 174
           LMR + L +L  L +   G  + + EI+ W N K++  G++S I SF+D+ L+ G   +D
Sbjct: 494 LMRTHMLQLLKSLRSRTRGKDMTDSEIISWANRKVRIMGRKSQIESFKDKSLSSGLFFLD 553

Query: 175 LIDAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIMTV 354
           L+ A++P  +N++LV  G +++E   NA Y +S+AR+ G  V+ LPEDI E   KMI+ +
Sbjct: 554 LLWAVEPRVVNWNLVTKGESDDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILIL 613

Query: 355 FACLM 369
            A +M
Sbjct: 614 TASIM 618


>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
           similarity to fimbrin-like protein AtFim2 [Arabidopsis
           thaliana] GI:2737926; contains Pfam profile PF00307:
           Calponin homology (CH) domain
          Length = 654

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 48/125 (38%), Positives = 80/125 (64%), Gaps = 2/125 (1%)
 Frame = +1

Query: 1   LMRAYTLSVLT--RLANTGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVID 174
           LMR   L +L   RL + G  I + +I++W N K+++ G ++ + SF+D+ L+DG   ++
Sbjct: 495 LMRYNILQLLKNLRLHSNGKEITDADILEWANAKVRNNGCKTRMYSFRDKSLSDGVFFLE 554

Query: 175 LIDAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIMTV 354
           L+ +++P S+N+ LV  G  +EE   NA Y IS+AR+ G  ++ LPEDI E   KM++T+
Sbjct: 555 LLSSVQPRSVNWSLVTNGVTDEEKKMNATYVISIARKLGCSIFLLPEDIIEVNQKMMLTL 614

Query: 355 FACLM 369
            A +M
Sbjct: 615 TASIM 619


>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 652

 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 47/125 (37%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
 Frame = +1

Query: 1   LMRAYTLSVLTRLAN--TGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVID 174
           LMR   L +L  L +   G  I E +I+ W N K++ +G+ S   SF+D+ LA+G   ++
Sbjct: 489 LMRYTMLQILNNLRSHCQGKDITEADILNWANRKVKKSGRTSQAVSFKDKNLANGIFFLE 548

Query: 175 LIDAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIMTV 354
           L+ A++P  +N+ LV  G  +EE   NA Y IS+AR+ G  ++ LPEDI E   +M++ +
Sbjct: 549 LLSAVEPRVVNWSLVSKGETQEEKNLNATYIISVARKLGCSIFLLPEDILEVNQRMMLIL 608

Query: 355 FACLM 369
            A +M
Sbjct: 609 AASIM 613


>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893
          Length = 687

 Score = 91.5 bits (217), Expect = 4e-19
 Identities = 45/125 (36%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
 Frame = +1

Query: 1   LMRAYTLSVLTRLANT--GNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVID 174
           LMR + L +L  L +   G  + + +I+ W N K+++ G++  I SF+D+ L+ G   ++
Sbjct: 493 LMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLN 552

Query: 175 LIDAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIMTV 354
           L+ A++P  +N++LV  G  ++E   NA Y +S+AR+ G  V+ LPEDI E   KMI+ +
Sbjct: 553 LLWAVEPRVVNWNLVTKGETDDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILIL 612

Query: 355 FACLM 369
            A +M
Sbjct: 613 TASIM 617


>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893, fimbrin [Schizosaccharomyces pombe]
           GI:3057144; contains Pfam profile PF00307: Calponin
           homology (CH) domain
          Length = 687

 Score = 90.6 bits (215), Expect = 8e-19
 Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
 Frame = +1

Query: 1   LMRAYTLSVLTRLAN--TGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVID 174
           LMR   L +L  L +   G  I + +I+ W N K++  G+ S   SF+D+ L+ G   ++
Sbjct: 493 LMRYTMLQLLRNLRSHSQGKEITDADILNWANRKVKRGGRTSQADSFRDKNLSSGMFFLE 552

Query: 175 LIDAIKPGSINYDLVLPGGNEEENLANAKYAISMARRCGGRVYALPEDITERKPKMIMTV 354
           L+ A++P  +N+ LV  G  EE+   NA Y IS+AR+ G  ++ LPEDI E   KM++ +
Sbjct: 553 LLSAVEPRVVNWSLVTNGETEEDKKLNATYIISVARKLGCSIFLLPEDIIEVNQKMMLIL 612

Query: 355 FACLM 369
            A +M
Sbjct: 613 AASIM 617



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/43 (32%), Positives = 30/43 (69%)
 Frame = +1

Query: 82  WVNNKLQSAGKQSSIRSFQDEVLADGKVVIDLIDAIKPGSINY 210
           W+N+ L +A   +++  F+D  L +G V+++++D + PGS+N+
Sbjct: 401 WINS-LGTATYVNNV--FED--LRNGWVLLEVLDKVSPGSVNW 438


>At5g60520.1 68418.m07589 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 338

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 184 AIKPGSINYDLVLPGGNEEENLANAKYAISMAR-RCGGRVYALPEDITERKPKMIMTVFA 360
           A    S NY+++ P G+ +E +        +AR  C  ++   P++  ERKPKM     A
Sbjct: 30  AYDAASTNYNVLYPLGSGQERVQ------CLARGSCNQKILTCPKECPERKPKMNKKKKA 83

Query: 361 CLM 369
           C +
Sbjct: 84  CFI 86


>At3g22700.1 68416.m02864 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 338

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 365 LWRWTTYPPWTRPSSRKSDRPELVVDKIQFRCIDDVN 475
           LWRW +    + P  R  +  E + DK  +R IDDVN
Sbjct: 153 LWRWKSNDYKSSPRQRGFEIYEFISDK--WRVIDDVN 187


>At2g17690.1 68415.m02048 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 421

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = +1

Query: 109 GKQSSIRSFQDEVLADGKV-VIDLIDAIKPGSINYDLVLPGGNEEENLANAKYAISMARR 285
           G +  +  F D VL +G    +D    +   S  YD++  G    EN+ N         R
Sbjct: 191 GIKKQVAQFSDFVLDEGLTYAVDTKGIMWWISSAYDIIRYGTKLHENITNGSCGEKRFVR 250

Query: 286 CGGRVYALPEDITE 327
           C G +Y +   I E
Sbjct: 251 CRGELYIVDRLIDE 264


>At5g25520.2 68418.m03037 transcription elongation factor-related
           contains weak similarity to transcription elongation
           factors
          Length = 997

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 46  TGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVIDL 177
           TG+ +++   + WV   +   G+  + +SF+D  L   K+ ++L
Sbjct: 328 TGDELLQGNGLSWVLEPVSDFGENETQKSFEDPELLASKIELEL 371


>At5g25520.1 68418.m03036 transcription elongation factor-related
           contains weak similarity to transcription elongation
           factors
          Length = 735

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 46  TGNPIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVIDL 177
           TG+ +++   + WV   +   G+  + +SF+D  L   K+ ++L
Sbjct: 328 TGDELLQGNGLSWVLEPVSDFGENETQKSFEDPELLASKIELEL 371


>At2g22530.1 68415.m02672 phosphatidylinositolglycan-related similar
           to Pig-o [Mus musculus] GI:8099973
          Length = 897

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/83 (20%), Positives = 40/83 (48%)
 Frame = -3

Query: 374 SAIRQANTVMIILGFRSVMSSGSAYTRPPQRRAIDIAYLAFAKFSSSLPPGSTRS*LMEP 195
           S+  + +++M+ +G  S +S  ++ T     + +D+A      F   +P  +    ++ P
Sbjct: 292 SSYEETDSLMLFIGLNSNISDYASATNNVAFQ-VDLAPTLALLFGVPIPKNNVG--VLVP 348

Query: 194 GLMASIKSITTFPSASTSSWKLL 126
           G + S++      +   +SW+LL
Sbjct: 349 GTLCSLRDFEQLRALELNSWQLL 371


>At5g48520.1 68418.m05999 expressed protein similar to unknown
           protein (gb|AAB97010.1)
          Length = 671

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/85 (20%), Positives = 37/85 (43%)
 Frame = +1

Query: 88  NNKLQSAGKQSSIRSFQDEVLADGKVVIDLIDAIKPGSINYDLVLPGGNEEENLANAKYA 267
           NN+    G + SI+  +D  LA     ++L   ++     YDL+   G     +   +  
Sbjct: 90  NNQEAVFGAEESIKEVRDATLAHKAEALELQRQLRRLQTQYDLLT--GQSSALIQGRRAR 147

Query: 268 ISMARRCGGRVYALPEDITERKPKM 342
           ++      G++ A+ + ++ R  +M
Sbjct: 148 VAATSAVSGQITAIEDSLSARNLQM 172


>At4g30720.1 68417.m04354 expressed protein hypothetical protein -
           Synechocystis sp. (strain PCC 6803),PIR2:S76076
          Length = 749

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 55  PIIEKEIVQWVNNKLQSAGKQSSIRSFQDEVLADGKVVI 171
           P+ + ++VQ+VN+K +   + SS RS     +  G  V+
Sbjct: 496 PVADYKVVQYVNDKTEDLSQSSSKRSCYSFCMCPGGQVV 534


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,465,829
Number of Sequences: 28952
Number of extensions: 273754
Number of successful extensions: 801
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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