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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0044
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A) iden...   119   2e-27
At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) simi...   117   7e-27
At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) simi...   116   1e-26
At5g24260.1 68418.m02854 prolyl oligopeptidase family protein si...    28   5.2  
At2g01100.3 68415.m00018 expressed protein                             28   5.2  
At2g01100.2 68415.m00017 expressed protein                             28   5.2  
At2g01100.1 68415.m00016 expressed protein                             28   5.2  
At3g56240.1 68416.m06250 copper homeostasis factor / copper chap...    28   6.9  
At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transfera...    28   6.9  
At1g48740.1 68414.m05454 expressed protein                             28   6.9  
At1g32090.1 68414.m03949 early-responsive to dehydration protein...    28   6.9  
At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SD...    27   9.2  
At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SD...    27   9.2  
At3g45200.1 68416.m04878 hypothetical protein                          27   9.2  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    27   9.2  
At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SD...    27   9.2  
At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SD...    27   9.2  

>At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A)
           identical to GB:Q42351, location of EST 105E2T7,
           gb|T22624
          Length = 120

 Score =  119 bits (287), Expect = 2e-27
 Identities = 60/104 (57%), Positives = 74/104 (71%), Gaps = 2/104 (1%)
 Frame = -3

Query: 435 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 256
           MVQRL +R R SY TKSNQ RIV+TPGG+LVYQ  KK    P+C     +++GI   RP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 255 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 130
           E  RSRL   ++TV R YGGVL    V++RI+RAFL+EEQKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104


>At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) similar
           to SP:Q42351 from [Arabidopsis thaliana]
          Length = 119

 Score =  117 bits (282), Expect = 7e-27
 Identities = 59/104 (56%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
 Frame = -3

Query: 435 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 256
           MVQRL +R R SY TKSNQ RIV+TPGG+L YQ  KK    P+C     +++GI   RP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 255 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 130
           E  RSRL   ++TV R YGGVL    V++RI+RAFL+EEQKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104


>At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) similar
           to 60S ribosomal protein L34 GB:P41098 [Nicotiana
           tabacum]
          Length = 120

 Score =  116 bits (280), Expect = 1e-26
 Identities = 60/104 (57%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
 Frame = -3

Query: 435 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 256
           MVQRL +R R SY TKSNQ RIV+TPGG+L YQ   K    P+C     +++GI   RPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 255 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 130
           E  RSRL   ++TV R YGGVL    V++RIVRAFL+EEQKIVK
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVK 104


>At5g24260.1 68418.m02854 prolyl oligopeptidase family protein
           similar to dipeptidyl peptidase IV [Stenotrophomonas
           maltophilia] GI:1753197; contains Pfam profiles PF00326:
           prolyl oligopeptidase family, PF00930: Dipeptidyl
           peptidase IV (DPP IV) N-terminal region
          Length = 746

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 449 PESVPPDT*QSPKIPFR*SQNTLLLRYLRPRSHHLLVLI 565
           PE + P +  SP I  R S N L L Y+R    H+L L+
Sbjct: 128 PELIVPSSPTSPIIDPRLSPNGLFLAYVRESELHVLNLL 166


>At2g01100.3 68415.m00018 expressed protein
          Length = 247

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 672 RSLAPAVHLRHRYRQDEQTEALLIDKGHYKHEWYSDIKT 556
           RSL+P+      Y    + E  +  K H +H+W+S  KT
Sbjct: 107 RSLSPSDDSTGDYESGSEDELRMKIKHHRRHKWHSSRKT 145


>At2g01100.2 68415.m00017 expressed protein
          Length = 247

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 672 RSLAPAVHLRHRYRQDEQTEALLIDKGHYKHEWYSDIKT 556
           RSL+P+      Y    + E  +  K H +H+W+S  KT
Sbjct: 107 RSLSPSDDSTGDYESGSEDELRMKIKHHRRHKWHSSRKT 145


>At2g01100.1 68415.m00016 expressed protein
          Length = 247

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 672 RSLAPAVHLRHRYRQDEQTEALLIDKGHYKHEWYSDIKT 556
           RSL+P+      Y    + E  +  K H +H+W+S  KT
Sbjct: 107 RSLSPSDDSTGDYESGSEDELRMKIKHHRRHKWHSSRKT 145


>At3g56240.1 68416.m06250 copper homeostasis factor / copper
           chaperone (CCH) (ATX1) identical to gi:3168840 Pfam
           profile PF00403: Heavy-metal-associated domain
          Length = 121

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 382 SKKNSKDTGWPLGLSVCQKAQEDPKVWSVQE 290
           SK   K + WP+      KA+ DPKV +V E
Sbjct: 58  SKTGKKTSYWPVEAEAEPKAEADPKVETVTE 88


>At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 496

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 245 RERSAGLAGWIPRSLLLH*PHLGIFLGFLTY 337
           +ERS  + GW P+ L+L  P +G   GFLT+
Sbjct: 347 KERSLLIKGWSPQMLILSHPAVG---GFLTH 374


>At1g48740.1 68414.m05454 expressed protein
          Length = 393

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -3

Query: 420 TFRRRLSYNTKSNQRRIVRTP-GGRLVYQ 337
           +FR+ +S NTK + RRI+  P  G LV+Q
Sbjct: 130 SFRKAISENTKESFRRIISEPFPGVLVFQ 158


>At1g32090.1 68414.m03949 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 806

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 456 PSHRIPDNHQRFHSDNHKTHY 518
           P H +PD   +F   NH  HY
Sbjct: 212 PGHSVPDTVDQFFKTNHPEHY 232


>At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 279

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 274 DTTEFALALTTPWDLLGLFDILINQAATRCPYYSSL 381
           D      A+   WD+ G  D LIN A  R    SSL
Sbjct: 83  DAATIQKAVREAWDIFGKIDALINNAGIRGNVKSSL 118


>At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 280

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 274 DTTEFALALTTPWDLLGLFDILINQAATRCPYYSSL 381
           D      A+   WD+ G  D LIN A  R    SSL
Sbjct: 84  DAATIQKAVREAWDIFGKIDALINNAGIRGNVKSSL 119


>At3g45200.1 68416.m04878 hypothetical protein
          Length = 300

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 572 TVILKLISDVIVVLGNEAIMCFVIIGMESLVIVRYPVGRIPAPT 441
           ++IL L   +I  L  EA+ CF     + L +   P+GRIP  T
Sbjct: 54  SIILTLTDPLIAGLAYEAVSCF-----QCLSLNNPPIGRIPLTT 92


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 229  LTVAKTRTFSRS--SWLDTTEFALALTTPWDLLGLFDILINQAATRCPYY 372
            L V +   FS+   SWLD    A  L   +D++G+   ++++  T+C  +
Sbjct: 5041 LNVKEMIGFSKELISWLDEINSATDLQEAFDIVGVLADVLSEGVTQCDQF 5090


>At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 276

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 274 DTTEFALALTTPWDLLGLFDILINQAATRCPYYSSL 381
           D      A+   W++ G  D+LIN A  R    SSL
Sbjct: 79  DADTIRKAVKEAWEIFGTIDVLINNAGIRGNVKSSL 114


>At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 277

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 274 DTTEFALALTTPWDLLGLFDILINQAATRCPYYSSL 381
           D      A+   W++ G  D+LIN A  R    SSL
Sbjct: 80  DADTIRKAVKEAWEIFGTIDVLINNAGIRGNVKSSL 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,757,290
Number of Sequences: 28952
Number of extensions: 298585
Number of successful extensions: 791
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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