Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120077.Seq
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g07410.1 68417.m01136 transducin family protein / WD-40 repea...    29   2.6  
At1g78680.1 68414.m09171 gamma-glutamyl hydrolase (GGH1) / gamma...    29   2.6  
At2g27770.1 68415.m03365 expressed protein                             29   4.5  
At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein...    28   6.0  
At1g30795.1 68414.m03765 hydroxyproline-rich glycoprotein family...    28   6.0  
At4g38780.1 68417.m05491 splicing factor, putative strong simila...    28   7.9  
At4g29810.1 68417.m04244 mitogen-activated protein kinase kinase...    28   7.9  

>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400) (2
           weak); similar to Vegetatible incompatibility protein
           HET-E-1 (SP:Q00808) {Podospora anserina}
          Length = 815

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/40 (27%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = -1

Query: 418 LQGLLHQNYDLPLIERENQPILF-GHITRSNTVILEKQWI 302
           L+G  ++  +  ++   N P+LF GH+++++ +++EK W+
Sbjct: 759 LEGKSNERKNFEILP-SNHPVLFVGHLSKNSILVIEKPWM 797


>At1g78680.1 68414.m09171 gamma-glutamyl hydrolase (GGH1) /
           gamma-Glu-X carboxypeptidase / conjugase identical to
           SP|O65355 Gamma-glutamyl hydrolase precursor (EC
           3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase)
           (GH) {Arabidopsis thaliana}
          Length = 347

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 388 LPLIERENQPILFGHITRSNTVILEKQWILEPIKGEVILRLNSITCFRTAVGE 230
           +PLI  E + ILF  +   N VIL   W  E +  E++ ++ +    R   GE
Sbjct: 95  IPLIFNEPEEILFQKLELVNGVILTGGWAKEGLYFEIVKKIFNKVLERNDAGE 147


>At2g27770.1 68415.m03365 expressed protein
          Length = 320

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 179 FYPPKFHFTPFGGNLPRLPDRCSKACDGIQPQNHFPL 289
           FY  K  F   G +   +  RC+K  +G++  NH+P+
Sbjct: 191 FYSTKVRFVETGDS-HEIVIRCNKETEGLKQSNHYPV 226


>At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein
           low similarity to SP|P25583 Karyogamy protein KAR4
           {Saccharomyces cerevisiae},
           (N6-adenosine)-methyltransferase [Mus musculus]
           GI:10179948; contains Pfam profile PF05063: MT-A70
           (S-adenosylmethionine-binding subunit of human mRNA:m6A
           methyl-transferase (MTase))
          Length = 775

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 496 RTDG-RAKALLGGESEGTMEAAIKRSILQGLLHQNYDLPLIERENQP 359
           R++G R+   LGG  +G    A+K     G+ ++NYD  +IE + +P
Sbjct: 257 RSEGERSHGRLGGRKDGNRGEAVKALSSGGVSNENYD--VIEIQTKP 301


>At1g30795.1 68414.m03765 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR000694
          Length = 109

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +2

Query: 179 FYPP-KFHFTPFGGNLPRLP 235
           F+PP +F   PFGGN+P+ P
Sbjct: 62  FFPPLQFAAAPFGGNIPQPP 81


>At4g38780.1 68417.m05491 splicing factor, putative strong
           similarity to splicing factor Prp8 [Homo sapiens]
           GI:3661610; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 2332

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 406 LHQNYDLPLIERENQPILFGHITRSNTVILEKQWILEPI 290
           L +N  +P  +  +  +L+ HIT + T + E +W++EPI
Sbjct: 97  LLENMPMPWEQVRDVKVLY-HITGAITFVNEVRWVVEPI 134


>At4g29810.1 68417.m04244 mitogen-activated protein kinase kinase
           (MAPKK) (MKK2) identical to MAP kinase kinase 2
           [Arabidopsis thaliana] gi|3219267|dbj|BAA28828;
           mitogen-activated protein kinase kinase (MAPKK) family,
           PMID:12119167
          Length = 363

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -1

Query: 439 AAIKRSILQGLLHQNYDLPLIERENQP--ILFGH 344
           +AI R +LQGL++ ++D  +I R+ +P  +L  H
Sbjct: 169 SAIFRQVLQGLIYLHHDRHIIHRDLKPSNLLINH 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,874,070
Number of Sequences: 28952
Number of extensions: 338022
Number of successful extensions: 777
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)