Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120071.Seq
(801 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 121 5e-28
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 112 2e-25
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 112 2e-25
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 86 3e-17
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 85 7e-17
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 84 1e-16
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 83 3e-16
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 81 1e-15
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 79 3e-15
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 79 3e-15
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 79 3e-15
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 73 2e-13
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 69 4e-12
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 68 6e-12
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 66 3e-11
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 64 8e-11
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 64 8e-11
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 62 4e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 60 2e-09
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 60 2e-09
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 57 2e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 57 2e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 56 4e-08
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 56 4e-08
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 54 1e-07
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 54 1e-07
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 54 1e-07
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 52 4e-07
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 49 3e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 48 1e-05
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 48 1e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 47 2e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 46 2e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 45 5e-05
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 45 5e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 45 7e-05
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 45 7e-05
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 44 9e-05
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 44 1e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 43 2e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 43 3e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 42 4e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 42 4e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 42 4e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 41 0.001
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 40 0.001
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 40 0.001
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 39 0.003
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 39 0.003
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.004
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 39 0.004
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 38 0.008
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 38 0.008
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 38 0.008
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 37 0.014
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 37 0.014
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 37 0.018
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 36 0.031
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 35 0.072
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 33 0.22
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 30 2.1
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 30 2.1
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 30 2.1
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote... 29 3.6
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 28 6.3
At5g43990.2 68418.m05382 SET domain-containing protein identical... 28 6.3
At5g43990.1 68418.m05383 SET domain-containing protein identical... 28 6.3
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 6.3
At2g33420.1 68415.m04096 expressed protein 28 6.3
At1g47330.1 68414.m05240 expressed protein contains Pfam profile... 28 8.3
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 8.3
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 121 bits (292), Expect = 5e-28
Identities = 54/81 (66%), Positives = 66/81 (81%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG +S ++
Sbjct: 144 ETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKT 203
Query: 702 TCVFGGAPKREQARDLEKGVE 764
TC++GG PK Q RDL+KGVE
Sbjct: 204 TCIYGGVPKGPQVRDLQKGVE 224
Score = 101 bits (241), Expect = 7e-22
Identities = 68/192 (35%), Positives = 94/192 (48%), Gaps = 5/192 (2%)
Frame = +2
Query: 236 SPR-LGFFSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 412
SPR L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 413 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAYSNGFRQNVGLHLASHCAH--KQP- 583
PDYV + VK G+ EPTPIQ+QGWP+AM G++ + + +L H QP
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPM 166
Query: 584 TAYSER*WSDCFGLGAYQRVSTTNSASCCRFWTHILCS*HVCVWWCS*KRAS-PGLGEGS 760
A+ + L + ++ +F + C++ K L +G
Sbjct: 167 LAHGD--GPIVLVLAPTRELAVQIQQEASKFGSSSKIK-TTCIYGGVPKGPQVRDLQKGV 223
Query: 761 RIVIATPGRLID 796
IVIATPGRLID
Sbjct: 224 EIVIATPGRLID 235
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 112 bits (270), Expect = 2e-25
Identities = 51/81 (62%), Positives = 65/81 (80%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269
Query: 702 TCVFGGAPKREQARDLEKGVE 764
TC++GGAPK Q RDL +GVE
Sbjct: 270 TCIYGGAPKGPQIRDLRRGVE 290
Score = 92.7 bits (220), Expect = 3e-19
Identities = 38/90 (42%), Positives = 59/90 (65%)
Frame = +2
Query: 239 PRLGFFSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 418
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 419 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
+ + + +G+ EPTPIQAQGWP+A+ G++
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRD 204
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 112 bits (270), Expect = 2e-25
Identities = 51/81 (62%), Positives = 65/81 (80%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269
Query: 702 TCVFGGAPKREQARDLEKGVE 764
TC++GGAPK Q RDL +GVE
Sbjct: 270 TCIYGGAPKGPQIRDLRRGVE 290
Score = 92.7 bits (220), Expect = 3e-19
Identities = 38/90 (42%), Positives = 59/90 (65%)
Frame = +2
Query: 239 PRLGFFSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 418
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 419 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
+ + + +G+ EPTPIQAQGWP+A+ G++
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRD 204
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 85.8 bits (203), Expect = 3e-17
Identities = 39/81 (48%), Positives = 53/81 (65%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +R
Sbjct: 574 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRC 633
Query: 702 TCVFGGAPKREQARDLEKGVE 764
V+GG+ +Q +L++G E
Sbjct: 634 VPVYGGSGVAQQISELKRGTE 654
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/82 (34%), Positives = 45/82 (54%)
Frame = +2
Query: 263 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 442
+PF KNFY + + + EV YR E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 443 MGYKEPTPIQAQGWPIAMSGKN 508
+ Y++P PIQ Q PI MSG++
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRD 568
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 84.6 bits (200), Expect = 7e-17
Identities = 40/81 (49%), Positives = 55/81 (67%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
+TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F +R
Sbjct: 273 KTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRV 332
Query: 702 TCVFGGAPKREQARDLEKGVE 764
+ V+GG K EQ ++L+ G E
Sbjct: 333 SAVYGGMSKHEQFKELKAGCE 353
Score = 70.5 bits (165), Expect = 1e-12
Identities = 28/82 (34%), Positives = 47/82 (57%)
Frame = +2
Query: 263 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 442
+P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 443 MGYKEPTPIQAQGWPIAMSGKN 508
Y++PT IQ Q PI +SG++
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRD 267
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 83.8 bits (198), Expect = 1e-16
Identities = 40/81 (49%), Positives = 56/81 (69%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
+TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG +S +
Sbjct: 480 KTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRISC 538
Query: 702 TCVFGGAPKREQARDLEKGVE 764
TC++GGAPK Q ++LE+G +
Sbjct: 539 TCLYGGAPKGPQLKELERGAD 559
Score = 66.5 bits (155), Expect = 2e-11
Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Frame = +2
Query: 272 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 439
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 440 TMGYKEPTPIQAQGWPIAMSGKN*LAYS-NGFRQNVGLHLASHCAHKQPTAYSER*WSDC 616
+ G+ PTPIQAQ WPIA+ ++ +A + G + +G + + + R
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRH-CRNDSRNGPTV 510
Query: 617 FGLGAYQRVSTTNSASCCRFW--THILCS*HVCVWWCS*KRAS-PGLGEGSRIVIATPGR 787
L + ++T RF + I C+ C++ + K L G+ IV+ATPGR
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCT---CLYGGAPKGPQLKELERGADIVVATPGR 567
Query: 788 LID 796
L D
Sbjct: 568 LND 570
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 82.6 bits (195), Expect = 3e-16
Identities = 38/81 (46%), Positives = 52/81 (64%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +
Sbjct: 441 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIIC 500
Query: 702 TCVFGGAPKREQARDLEKGVE 764
V+GG+ +Q +L++G E
Sbjct: 501 VPVYGGSGVAQQISELKRGTE 521
Score = 64.1 bits (149), Expect = 1e-10
Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 5/183 (2%)
Frame = +2
Query: 263 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 442
+PF KNFY + + + V YR E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 443 MGYKEPTPIQAQGWPIAMSGKN*LAYS-NGFRQNVG--LHLASHCAHKQPTAYSER*WSD 613
+ Y++P PIQAQ PI MSG++ + + G + +G L + H + P +
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGD----G 469
Query: 614 CFGL-GAYQRVSTTNSASCCRFWTHILCS*HVCVWWCS-*KRASPGLGEGSRIVIATPGR 787
GL A R S R ++ L V V+ S + L G+ IV+ TPGR
Sbjct: 470 PIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGR 529
Query: 788 LID 796
+ID
Sbjct: 530 MID 532
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 80.6 bits (190), Expect = 1e-15
Identities = 39/81 (48%), Positives = 54/81 (66%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG +S +
Sbjct: 274 KTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFGKSSKISC 332
Query: 702 TCVFGGAPKREQARDLEKGVE 764
C++GGAPK Q +++E+GV+
Sbjct: 333 ACLYGGAPKGPQLKEIERGVD 353
Score = 42.7 bits (96), Expect = 3e-04
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Frame = +2
Query: 434 VKTMGYKEPTPIQAQGWPIAMSGKN*LAYS-NGFRQNVGLHLASHCAHKQPTAYSER*WS 610
V + G+ P+PIQAQ WPIAM ++ +A + G + +G +L H Q R
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLG-YLIPGFMHLQRIHNDSRMGP 302
Query: 611 DCFGLGAYQRVSTTNSASCCRFW--THILCS*HVCVWWCS*KRASPGLGE---GSRIVIA 775
L + ++T +F + I C+ C++ + K P L E G IV+A
Sbjct: 303 TILVLSPTRELATQIQVEALKFGKSSKISCA---CLYGGAPK--GPQLKEIERGVDIVVA 357
Query: 776 TPGRLID 796
TPGRL D
Sbjct: 358 TPGRLND 364
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 329 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 418
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 79.4 bits (187), Expect = 3e-15
Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 4/173 (2%)
Frame = +2
Query: 290 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 469
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 470 QAQGWPIAMSGKN*LAYS-NGFRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVS 646
QAQ WPIAM G++ +A + G + +G +L H Q R L + ++
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG-YLIPGFLHLQRIRNDSRMGPTILVLSPTRELA 243
Query: 647 TTNSASCCRFW--THILCS*HVCVWWCS*KRAS-PGLGEGSRIVIATPGRLID 796
T +F + I C+ C++ + K L G+ IV+ATPGRL D
Sbjct: 244 TQIQEEAVKFGRSSRISCT---CLYGGAPKGPQLRDLERGADIVVATPGRLND 293
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 79.4 bits (187), Expect = 3e-15
Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 4/173 (2%)
Frame = +2
Query: 290 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 469
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 470 QAQGWPIAMSGKN*LAYS-NGFRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVS 646
QAQ WPIAM G++ +A + G + +G +L H Q R L + ++
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG-YLIPGFLHLQRIRNDSRMGPTILVLSPTRELA 243
Query: 647 TTNSASCCRFW--THILCS*HVCVWWCS*KRAS-PGLGEGSRIVIATPGRLID 796
T +F + I C+ C++ + K L G+ IV+ATPGRL D
Sbjct: 244 TQIQEEAVKFGRSSRISCT---CLYGGAPKGPQLRDLERGADIVVATPGRLND 293
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 79.4 bits (187), Expect = 3e-15
Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 4/173 (2%)
Frame = +2
Query: 290 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 469
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 470 QAQGWPIAMSGKN*LAYS-NGFRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVS 646
QAQ WPIAM G++ +A + G + +G +L H Q R L + ++
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG-YLIPGFLHLQRIRNDSRMGPTILVLSPTRELA 243
Query: 647 TTNSASCCRFW--THILCS*HVCVWWCS*KRAS-PGLGEGSRIVIATPGRLID 796
T +F + I C+ C++ + K L G+ IV+ATPGRL D
Sbjct: 244 TQIQEEAVKFGRSSRISCT---CLYGGAPKGPQLRDLERGADIVVATPGRLND 293
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 692
+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 358 ETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLG 417
Query: 693 VRNTCVFGGAPKREQARDLEKGVE 764
R T + GG EQ + +G E
Sbjct: 418 FRVTSIVGGQSIEEQGLKITQGCE 441
Score = 39.9 bits (89), Expect = 0.002
Identities = 33/158 (20%), Positives = 70/158 (44%), Gaps = 4/158 (2%)
Frame = +2
Query: 335 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*L 514
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++ +
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 515 AYS---NGFRQNVGLHLASHCAHKQP-TAYSER*WSDCFGLGAYQRVSTTNSASCCRFWT 682
+ +G L + ++ + P + +E + + ++ +F
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAH 414
Query: 683 HILCS*HVCVWWCS*KRASPGLGEGSRIVIATPGRLID 796
++ V S + + +G IVIATPGRLID
Sbjct: 415 YLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLID 452
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 68.9 bits (161), Expect = 4e-12
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 686
QTGSGKT A+ P I I ++R G P+A++L+PTRELA QI A F +
Sbjct: 204 QTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQ 263
Query: 687 SYVRNTCVFGGAPKREQARDLEKGVE 764
+ V+ +GG P +Q R+LE+GV+
Sbjct: 264 TGVKVVVAYGGTPINQQLRELERGVD 289
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 260 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 436
+ PF + +P P ++ + + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 437 KTMGYKEPTPIQAQGWPIAMSGKN*LA 517
+ Y +PTP+Q PI + G++ +A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 68.1 bits (159), Expect = 6e-12
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 686
QTGSGKT A+ P I I I R G P+A++L+PTRELA QI A F +
Sbjct: 191 QTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQ 250
Query: 687 SYVRNTCVFGGAPKREQARDLEKGVE 764
+ V+ +GG P +Q R+LE+GV+
Sbjct: 251 TGVKVVVAYGGTPVNQQIRELERGVD 276
Score = 34.7 bits (76), Expect = 0.072
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +2
Query: 266 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 442
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 443 MGYKEPTPIQAQGWPIAMSGKN*LA 517
Y +PTP+Q PI +G++ +A
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMA 188
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 65.7 bits (153), Expect = 3e-11
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTS 689
+TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V + G
Sbjct: 159 KTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPC 218
Query: 690 YVRNTCVFGGAPKREQARDLEKGVE 764
+++ CV+GG+ K Q + GV+
Sbjct: 219 GLKSICVYGGSSKGPQISAIRSGVD 243
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +2
Query: 323 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 496
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 497 SGKN 508
G++
Sbjct: 150 DGRD 153
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 64.5 bits (150), Expect = 8e-11
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 686
QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ 255
Query: 687 SYVRNTCVFGGAPKREQARDLEKGVE 764
+ V+ +GG P +Q R+LE+G +
Sbjct: 256 TGVKVVVAYGGTPIHQQLRELERGCD 281
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 353 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++ +A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 64.5 bits (150), Expect = 8e-11
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 686
QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ 255
Query: 687 SYVRNTCVFGGAPKREQARDLEKGVE 764
+ V+ +GG P +Q R+LE+G +
Sbjct: 256 TGVKVVVAYGGTPIHQQLRELERGCD 281
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 353 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++ +A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 62.1 bits (144), Expect = 4e-10
Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 692
R +TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++ +F ++
Sbjct: 147 RARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK---EFRESAP 203
Query: 693 VRNT-CVFGGAPKREQARDLEKGVE 764
+T C++GG P +Q R L+ GV+
Sbjct: 204 SLDTICLYGGTPIGQQMRQLDYGVD 228
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 59.7 bits (138), Expect = 2e-09
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ----IQQVAADFGH 683
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q ++Q A
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVE 202
Query: 684 TSY--VRNTCVFGGAPKREQARDLEKGV 761
Y +R+ GG R Q ++KGV
Sbjct: 203 DGYPRLRSLLCIGGVDMRSQLDVVKKGV 230
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/76 (32%), Positives = 43/76 (56%)
Frame = +2
Query: 281 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 460
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 461 TPIQAQGWPIAMSGKN 508
TPIQ QG P+ +SG++
Sbjct: 121 TPIQVQGLPVVLSGRD 136
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 59.7 bits (138), Expect = 2e-09
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 692
R +TG+GKTLA+ +P I I RG P LVLAPTRELA+Q+++ +F ++
Sbjct: 159 RARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK---EFRESAP 215
Query: 693 VRNT-CVFGGAPKREQARDLEKGVE 764
+T C++GG P +Q R+L G++
Sbjct: 216 SLDTICLYGGTPIGQQMRELNYGID 240
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 56.8 bits (131), Expect = 2e-08
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADFG 680
R +TG GKTLA++LP + + N P + G P LVL PTRELA+Q+ +G
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYG 198
Query: 681 HTSYVRNTCVFGGAPKREQARDLEKGVE 764
+ + + C++GG Q L++GV+
Sbjct: 199 GSLGLSSCCLYGGDSYPVQEGKLKRGVD 226
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 56.8 bits (131), Expect = 2e-08
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SYVR 698
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H ++
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIV 135
Query: 699 NTCVFGGAPKREQARDLEKGV 761
V GG K ++ L KG+
Sbjct: 136 PGYVMGGEKKAKEKARLRKGI 156
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 443 MGYKEPTPIQAQGWPIAMSGKN 508
MG++ PT +QAQ P+ +SG++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRD 69
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 55.6 bits (128), Expect = 4e-08
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ----IQQVAADFGH 683
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q ++Q A
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVE 251
Query: 684 TSY--VRNTCVFGGAPKREQARDLEKGV 761
Y +R+ GG R Q +++GV
Sbjct: 252 AGYPPLRSLLCIGGIDMRSQLEVVKRGV 279
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/75 (30%), Positives = 41/75 (54%)
Frame = +2
Query: 284 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 463
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 464 PIQAQGWPIAMSGKN 508
PIQ QG P+ ++G++
Sbjct: 171 PIQVQGLPVILAGRD 185
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 55.6 bits (128), Expect = 4e-08
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Frame = +3
Query: 519 TQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGH 683
+ TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA H
Sbjct: 156 SHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISH 214
Query: 684 TSYVRNTCVFGGAPKREQARDLEKGVE 764
+ R+ V GG+ R Q L ++
Sbjct: 215 HARFRSILVSGGSRIRPQEDSLNNAID 241
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 54.0 bits (124), Expect = 1e-07
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQVAADFG 680
R +TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++ +
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE-- 202
Query: 681 HTSYVRNTCVFGGAPKREQARDLEKGVE 764
Y+ CV+GG Q L +GV+
Sbjct: 203 SAPYLSTVCVYGGVSYTIQQSALTRGVD 230
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 54.0 bits (124), Expect = 1e-07
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 695
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 156 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPF 215
Query: 696 RNTCVFGGAPKREQARDLEKGVE 764
+ V GG P Q +++GVE
Sbjct: 216 KTALVVGGDPMSGQLYRIQQGVE 238
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 314 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 487
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 488 IAMSGKN*LA 517
A++GK+ LA
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 54.0 bits (124), Expect = 1e-07
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 695
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 19 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPF 78
Query: 696 RNTCVFGGAPKREQARDLEKGVE 764
+ V GG P Q +++GVE
Sbjct: 79 KTALVVGGDPMSGQLYRIQQGVE 101
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 52.0 bits (119), Expect = 4e-07
Identities = 28/79 (35%), Positives = 47/79 (59%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +R
Sbjct: 73 RTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLRV 129
Query: 702 TCVFGGAPKREQARDLEKG 758
+ + GG +Q +L KG
Sbjct: 130 SLLVGGDSMEDQFEELTKG 148
Score = 35.9 bits (79), Expect = 0.031
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 502
FE N V +K GYK PTPIQ + P+ +SG
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG 65
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQIQQVAADFGHTS 689
Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+ +
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSG 478
Query: 690 Y-VRNTCVFGGAPKREQARDLEKGVE 764
R+ V GG +R Q +LE+GV+
Sbjct: 479 VPFRSMVVTGGFRQRTQLENLEQGVD 504
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 47.6 bits (108), Expect = 1e-05
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Frame = +3
Query: 501 ERISWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF- 677
E + +TGSGKTLA+++PA V + + +G LV+ PTRELA Q VA +
Sbjct: 192 EDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELL 250
Query: 678 -GHTSYVRNTCVFGGAPKREQARDLEKGV 761
H+ V V GG ++ +A L KGV
Sbjct: 251 KYHSQTVGK--VIGGEKRKTEAEILAKGV 277
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/82 (24%), Positives = 34/82 (41%)
Frame = +2
Query: 263 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 442
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 443 MGYKEPTPIQAQGWPIAMSGKN 508
MG+ T IQA+ P M G++
Sbjct: 172 MGFARMTQIQAKAIPPLMMGED 193
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 47.6 bits (108), Expect = 1e-05
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +3
Query: 522 QTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 698
+TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 134 RTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEELLKHHSQT 191
Query: 699 NTCVFGGAPKREQARDLEKG 758
+ V GG +R +A+ + G
Sbjct: 192 VSMVIGGNNRRSEAQRIASG 211
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 746 LGEGSRIVIATPGRLID 796
+ GS +VIATPGRL+D
Sbjct: 208 IASGSNLVIATPGRLLD 224
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/85 (36%), Positives = 43/85 (50%)
Frame = +3
Query: 483 GR*LCLERISWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 662
GR LC I TGSGKT A+ LP + + +P +R L+L PTRELA QI
Sbjct: 204 GRDLCASAI-----TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHS 256
Query: 663 VAADFGHTSYVRNTCVFGGAPKREQ 737
+ + + ++ + GG REQ
Sbjct: 257 MIQNLAQFTDIKCGLIVGGLSVREQ 281
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +2
Query: 356 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRD 206
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 46.4 bits (105), Expect = 2e-05
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 692
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPN 119
Query: 693 VRNTCVFGGAPKREQARDLEK 755
V + + GG LE+
Sbjct: 120 VNSVLLVGGREVEADMNTLEE 140
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 653
+ +TG+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 425 KAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/49 (51%), Positives = 29/49 (59%)
Frame = +3
Query: 615 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLEKGV 761
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGV 160
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 44.8 bits (101), Expect = 7e-05
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 656
R +TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 89 RAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +2
Query: 323 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 502
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 503 KN*LA 517
K+ +A
Sbjct: 84 KDVVA 88
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 44.8 bits (101), Expect = 7e-05
Identities = 25/49 (51%), Positives = 29/49 (59%)
Frame = +3
Query: 615 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLEKGV 761
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGV 158
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 44.4 bits (100), Expect = 9e-05
Identities = 30/76 (39%), Positives = 39/76 (51%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 701
QTGSGKT A+ LP I+H + P G ALV+ PTRELA Q+ + G +R
Sbjct: 103 QTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLRC 157
Query: 702 TCVFGGAPKREQARDL 749
+ + GG Q L
Sbjct: 158 SVIVGGMDMLTQTMSL 173
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/49 (51%), Positives = 29/49 (59%)
Frame = +3
Query: 615 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLEKGV 761
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGV 158
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +2
Query: 338 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 505
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 653
TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 653
+ +TG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 97 KAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 653
+ +TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 123 KAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 42.3 bits (95), Expect = 4e-04
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 692
TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA F T +
Sbjct: 62 TGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVAQPFVSTLAN 119
Query: 693 VRNTCVFGGAPKREQARDLEK 755
V + + GG + + +E+
Sbjct: 120 VNSVLLVGGREVKADMKIIEE 140
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 668
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +3
Query: 492 LCLERISWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 653
LC I +TGSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 40.3 bits (90), Expect = 0.001
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQVAADFG 680
QTGSGKT A+ +P + + +++P R P A VL+PTRELA QI + G
Sbjct: 54 QTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALG 113
Query: 681 HTSYVRNTCVFGGAPKREQARDLEK 755
+R + GG + +Q L K
Sbjct: 114 ADISLRCAVLVGGIDRMQQTIALGK 138
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 371 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 508
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKD 48
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 656
+ +TG+GK++A++LPAI + N+ + + AL+L PTRELA QI
Sbjct: 371 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/82 (28%), Positives = 40/82 (48%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 695
R + G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 696 RNTCVFGGAPKREQARDLEKGV 761
+ GG ++ L + V
Sbjct: 229 QVMVTTGGTSLKDDIMRLYQPV 250
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
FE+ + G+ G++ P+PIQ + PIA++G++ LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/82 (28%), Positives = 40/82 (48%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 695
R + G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G +
Sbjct: 174 RAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKI 228
Query: 696 RNTCVFGGAPKREQARDLEKGV 761
+ GG ++ L + V
Sbjct: 229 QVMVTTGGTSLKDDIMRLYQPV 250
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
FE+ + G+ G++ P+PIQ + PIA++G++ LA
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILA 173
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +3
Query: 525 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 665
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 656
+ +TG+GK++A++LPAI + N+ + + L+L PTRELA QI
Sbjct: 418 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/82 (29%), Positives = 39/82 (47%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 695
R + G+GKT A+ +P + I+ + + A++L PTRELA Q QV + +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNI 221
Query: 696 RNTCVFGGAPKREQARDLEKGV 761
+ GG R+ L + V
Sbjct: 222 QVMVTTGGTSLRDDIMRLHQPV 243
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
FE+ + +G+ G+++P+PIQ + PIA++G + LA
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/82 (29%), Positives = 39/82 (47%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 695
R + G+GKT A+ +P + I+ + + A++L PTRELA Q QV + +
Sbjct: 167 RAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNI 221
Query: 696 RNTCVFGGAPKREQARDLEKGV 761
+ GG R+ L + V
Sbjct: 222 QVMVTTGGTSLRDDIMRLHQPV 243
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
FE+ + +G+ G+++P+PIQ + PIA++G + LA
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILA 166
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 37.9 bits (84), Expect = 0.008
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Frame = +3
Query: 516 RTQTGSGKT--LAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HT 686
+ Q+G+GKT +A + IV+I+++ LVL+P+RELA Q ++ G HT
Sbjct: 65 QAQSGTGKTSMIAISVCQIVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHT 117
Query: 687 SYVRNTCVFGGAPKREQARDLEKGV 761
+ + C+ GG E + LE+GV
Sbjct: 118 NIQAHACI-GGKSIGEDIKKLERGV 141
Score = 36.3 bits (80), Expect = 0.024
Identities = 33/138 (23%), Positives = 53/138 (38%)
Frame = +2
Query: 383 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LAYSNGFRQNVGLHLAS 562
PI+ F++ D V +GV GYK+P+ IQ + + G++ +A + + S
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 563 HCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRFWTHILCS*HVCVWWCS*KRASP 742
C Q S R L + +++ + H H C+ S
Sbjct: 80 VC---QIVNISSR-KVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIK 135
Query: 743 GLGEGSRIVIATPGRLID 796
L G V TPGR+ D
Sbjct: 136 KLERGVHAVSGTPGRVYD 153
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.1 bits (82), Expect = 0.014
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 668
QTGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 121 QTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 37.1 bits (82), Expect = 0.014
Identities = 24/82 (29%), Positives = 39/82 (47%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 695
R + G+GKT A+ +P + I+ + + + A++L PTRELA Q QV + +
Sbjct: 197 RAKNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYLKI 251
Query: 696 RNTCVFGGAPKREQARDLEKGV 761
GG R+ L + V
Sbjct: 252 EVMVTTGGTSLRDDIMRLYQPV 273
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
FE+ + +G+ G+++P+PIQ + PIA++G + LA
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILA 196
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 36.7 bits (81), Expect = 0.018
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 615 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLEKGV 761
AL+L+PTRELA Q ++ G H + + C+ GG E R LE GV
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACI-GGNSVGEDIRKLEHGV 154
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 35.9 bits (79), Expect = 0.031
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI-QQVA 668
++ TGSGKTLAY+LP + I R A+++AP+REL QI ++V
Sbjct: 153 QSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVE 212
Query: 669 ADFGHTSYVRNTCVFGGAPKREQARDLEK 755
G + GGA + Q L+K
Sbjct: 213 KLLGPVHRRMVQQLVGGANRMRQEEALKK 241
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 395 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 502
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 34.7 bits (76), Expect = 0.072
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 680
+ GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 137 QAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 33.1 bits (72), Expect = 0.22
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Frame = +3
Query: 522 QTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALVLAPTRELAQQI 656
+TGSGKTLA+ LP + + + DG + AL++ PTRELA Q+
Sbjct: 236 ETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQV 295
Query: 657 QQVAADFGHTSYVRNTCVFGGAPKREQARDLEKGVE 764
+ + V+ + GG +Q R L++ E
Sbjct: 296 TEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPE 331
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 29.9 bits (64), Expect = 2.1
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQIQQVAADFGHTSY 692
+ ++G GKT ++L + I P G + ALVL TRELA QI F ++Y
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQICNEFVRF--STY 140
Query: 693 VRNT--CVFGGAPKREQARDLEK 755
+ +T VF G + +DL K
Sbjct: 141 LPDTKVSVFYGGVNIKIHKDLLK 163
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 29.9 bits (64), Expect = 2.1
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQIQQVAADFGHTSY 692
+ ++G GKT ++L + I P G + ALVL TRELA QI F ++Y
Sbjct: 6 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQICNEFVRF--STY 57
Query: 693 VRNT--CVFGGAPKREQARDLEK 755
+ +T VF G + +DL K
Sbjct: 58 LPDTKVSVFYGGVNIKIHKDLLK 80
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 29.9 bits (64), Expect = 2.1
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +3
Query: 516 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQIQQVAADFGHTSY 692
+ ++G GKT ++L + I P G + ALVL TRELA QI F ++Y
Sbjct: 89 QAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQICNEFVRF--STY 140
Query: 693 VRNT--CVFGGAPKREQARDLEK 755
+ +T VF G + +DL K
Sbjct: 141 LPDTKVSVFYGGVNIKIHKDLLK 163
>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 - Oryza sativa,
PIR:A57676
Length = 1011
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 421 CATRCKDNGLQRTDAYSSSRLADSYVWKELVGVLKR 528
C T + GL+ + Y ++RLA S V KEL+ + +R
Sbjct: 966 CLTLVLEVGLRCCEEYPTNRLATSEVAKELISIRER 1001
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam domain
PF04931: DNA polymerase V
Length = 1306
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 279 FLLKGWSEKNPNLGDACSDLQRILFSHQILQILQIYCH 166
+L + + EK G + Q +LF ++L +L+IY H
Sbjct: 982 YLAQIFKEKRNQAGGETAQSQLVLFKLRVLSLLEIYLH 1019
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 233 ASPRLGFFSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 412
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 413 PDYVQQGVKTM 445
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 233 ASPRLGFFSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 412
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 413 PDYVQQGVKTM 445
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 655 ICCANSLVGAKTKAIGPSPLRI 590
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 17 SKRIHSLNKHLQLNPKI 67
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At1g47330.1 68414.m05240 expressed protein contains Pfam profile
PF01595: Domain of unknown function
Length = 527
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +3
Query: 399 KKQIFLIMCNKV*RQWVTKNRRLFKLKAGR*LCLERISWRTQTGSGKTLAYILPA 563
K ++F C K Q+ + +FK++ G + + Q GSGKT PA
Sbjct: 332 KDELFKDSCRKPKAQFEVSEKEVFKIETGDAKSGKSENGEEQQGSGKTSLLAAPA 386
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 17 SKRIHSLNKHLQLNPKI 67
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,813,411
Number of Sequences: 28952
Number of extensions: 358387
Number of successful extensions: 1236
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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