Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120066.Seq
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29560.1 68417.m04215 expressed protein                             30   2.1  
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family...    29   2.7  
At4g11070.1 68417.m01798 WRKY family transcription factor other ...    29   3.6  
At5g49555.1 68418.m06133 amine oxidase-related contains Pfam pro...    28   8.4  
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote...    28   8.4  
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ...    28   8.4  

>At4g29560.1 68417.m04215 expressed protein 
          Length = 493

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -1

Query: 449 VSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLVKLVTSGWN 279
           +SN  L     D +    +S P +   K+GS G ++  + V+ + +    LV   WN
Sbjct: 135 ISNLDLDSADEDSMKQVFDSVPDWLSEKLGSAGTILPWLPVSCDDVDSEMLVVDSWN 191


>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
           protein similar to SP|Q28141 ATP-dependent RNA helicase
           A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
           taurus}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1015

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 405 DGAQQHPLVFCKQNGFSGNACVISFSDHKLHFVSKISNKW 286
           DG+   PL+        G  C++ F D  +HF S I+N++
Sbjct: 799 DGSSTSPLLDLFPTSSEG--CILVFDDSDMHFTSSIANRY 836


>At4g11070.1 68417.m01798 WRKY family transcription factor other
           putative proteins, Arabidopsis thaliana
          Length = 313

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -1

Query: 449 VSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLV-SLVSVTTN 318
           VS+ + +IL ++G +T+HN T   + + +  PG +  S  S+T N
Sbjct: 53  VSSFKKAILMLNGSTTQHNPTIELAPDPLAHPGKVPGSPASITGN 97


>At5g49555.1 68418.m06133 amine oxidase-related contains Pfam
           profile PF01593: amine oxidase, flavin-containing
          Length = 556

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = -3

Query: 426 FNDRRSVDGAQQHPLVFCKQNGFS-GNACVISFSDHKLHFVSKISNKWMESIVYKS*CVN 250
           FND+ S    +      C +   S G+  +++F D  L   SK+ N W ES V K+  + 
Sbjct: 163 FNDKLSNKMYKSAFWARCLRQAVSLGHKDMVAFMDLLLAPASKVLNNWFESDVLKA-SLA 221

Query: 249 TTAAICRVSALFLNISNSGWVI 184
           T A I   S   ++   SG+V+
Sbjct: 222 TDAVI--GSTASVHTPGSGYVL 241


>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 666

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = -1

Query: 560 VYLTRNQ--SARRVFALRGANVLAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNS 390
           V L+RN+   + RV  + G+ + A++ L LSF++F K +V+ +  + LT   L   HNS
Sbjct: 109 VNLSRNRFGGSIRVIPVNGSVLSAVKELNLSFNRF-KHAVNFTGFTNLTT--LDLSHNS 164


>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1218

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
 Frame = -1

Query: 572 RNLVVYLTRNQSARRVFALRGANVLAIRTLQLSFSKFTKASVSNSRLSILTIDGLS---T 402
           +NL   L RN S  +VF +   ++L  +T  LSF KF +  +       +T D  +   T
Sbjct: 554 KNLPTILPRNSSMYKVFVIDECHLLPSKT-WLSFLKFLENPLQKVVFIFITTDLENVPRT 612

Query: 401 EHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLVKL 297
             +    F  +K+    ++V L  + ++  L V L
Sbjct: 613 IQSRCQKFLFDKLKDSDIVVRLKKIASDENLDVDL 647


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,632,816
Number of Sequences: 28952
Number of extensions: 328477
Number of successful extensions: 813
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)