Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120060.Seq
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12390.1 68416.m01544 nascent polypeptide associated complex ...   116   2e-26
At5g13850.1 68418.m01619 nascent polypeptide-associated complex ...   115   3e-26
At3g49470.1 68416.m05407 nascent polypeptide-associated complex ...   114   5e-26
At1g33040.1 68414.m04068 nascent polypeptide-associated complex ...   109   2e-24
At4g10480.1 68417.m01720 nascent polypeptide associated complex ...   109   2e-24
At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family...    29   4.2  

>At3g12390.1 68416.m01544 nascent polypeptide associated complex
           alpha chain protein, putative / alpha-NAC, putative
           similar to alpha-NAC, non-muscle form [Mus musculus]
           GI:1666690; contains Pfam profiles PF01849: NAC domain,
           PF00627: UBA/TS-N domain
          Length = 203

 Score =  116 bits (279), Expect = 2e-26
 Identities = 52/75 (69%), Positives = 65/75 (86%)
 Frame = +2

Query: 260 EKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLS 439
           EKK+RK M KLG+KP+ GV RVT++KSKNILFVI+ PDV+K+P SDTY++FGEAKIEDLS
Sbjct: 63  EKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLS 122

Query: 440 TQATMAAAERFKAPE 484
           +Q    AAE+FKAP+
Sbjct: 123 SQIQSQAAEQFKAPD 137



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = +1

Query: 598 IVMSQANVSRAKAVRALKNNQSDIVNAIMELT 693
           +VM+QA VSR  AV+ALK    DIV+AIMELT
Sbjct: 171 LVMTQAGVSRPNAVKALKAADGDIVSAIMELT 202


>At5g13850.1 68418.m01619 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to alpha-NAC,
           non-muscle form [Mus musculus] GI:1666690; contains Pfam
           profile PF01849: NAC domain
          Length = 159

 Score =  115 bits (277), Expect = 3e-26
 Identities = 52/74 (70%), Positives = 64/74 (86%)
 Frame = +2

Query: 260 EKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLS 439
           EKK+RK M KLG+KP+ GV RVT++KSKNILFVI+ PDV+K+P SDTY++FGEAKIEDLS
Sbjct: 59  EKKSRKAMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLS 118

Query: 440 TQATMAAAERFKAP 481
           +Q    AAE+FKAP
Sbjct: 119 SQLQSQAAEQFKAP 132


>At3g49470.1 68416.m05407 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to alpha-NAC,
           non-muscle form [Mus musculus] GI:1666690; contains Pfam
           profile PF01849: NAC domain
          Length = 217

 Score =  114 bits (275), Expect = 5e-26
 Identities = 51/83 (61%), Positives = 67/83 (80%)
 Frame = +2

Query: 260 EKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLS 439
           EKK+RK M KLG+KPV GV RVTI+++KN+LF I+ PDV+K+PHS+TY++FGEAKIEDLS
Sbjct: 73  EKKSRKAMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLS 132

Query: 440 TQATMAAAERFKAPETTATGNDA 508
           +Q    AA++F+ PE  AT   A
Sbjct: 133 SQLQTQAAQQFRMPEIGATSQRA 155



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/32 (68%), Positives = 29/32 (90%)
 Frame = +1

Query: 598 IVMSQANVSRAKAVRALKNNQSDIVNAIMELT 693
           +VM+QA VSR+KAV+ALK++  DIV+AIMELT
Sbjct: 185 LVMTQAGVSRSKAVKALKSHDGDIVSAIMELT 216


>At1g33040.1 68414.m04068 nascent polypeptide-associated complex
           (NAC) domain-containing protein similar to alpha-NAC,
           non-muscle form [Mus musculus] GI:1666690; contains Pfam
           profile PF01849: NAC domain
          Length = 209

 Score =  109 bits (262), Expect = 2e-24
 Identities = 46/78 (58%), Positives = 66/78 (84%)
 Frame = +2

Query: 260 EKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLS 439
           EKK+RK + KLG+KPV  V RVTI+++KN+LFVI+ PDVYK+P+++TY++FGEAK++DLS
Sbjct: 65  EKKSRKAVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEAKVDDLS 124

Query: 440 TQATMAAAERFKAPETTA 493
           +Q    AA+RFK P+ T+
Sbjct: 125 SQLQTQAAQRFKMPDVTS 142



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 27/57 (47%), Positives = 33/57 (57%)
 Frame = +1

Query: 523 TVAPIAXXXXXXXXXXXXXXXXXXXIVMSQANVSRAKAVRALKNNQSDIVNAIMELT 693
           T+AP+A                   +VM+QA VS+AKAV ALK N  DIV+AIMELT
Sbjct: 152 TMAPLAEEEDEDDVDDTGVEARDIDLVMTQAGVSKAKAVSALKANDGDIVSAIMELT 208


>At4g10480.1 68417.m01720 nascent polypeptide associated complex
           alpha chain protein, putative / alpha-NAC, putative
           similar to alpha-NAC, non-muscle form [Mus musculus]
           GI:1666690; contains Pfam profiles PF01849: NAC domain,
           PF00627: UBA/TS-N domain
          Length = 212

 Score =  109 bits (261), Expect = 2e-24
 Identities = 47/78 (60%), Positives = 65/78 (83%)
 Frame = +2

Query: 260 EKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLS 439
           EKK+RK M KLG+KPV  V RVTI++SKN+LFVI+ PDV+K+P+S+TY++FGEAKI+D+S
Sbjct: 68  EKKSRKAMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMS 127

Query: 440 TQATMAAAERFKAPETTA 493
           +Q    AA+RFK P+  +
Sbjct: 128 SQLQAQAAQRFKMPDVAS 145



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/32 (68%), Positives = 27/32 (84%)
 Frame = +1

Query: 598 IVMSQANVSRAKAVRALKNNQSDIVNAIMELT 693
           +VM+QA VSR KAV+ALK +  DIV+AIMELT
Sbjct: 180 LVMTQAGVSRPKAVKALKESNGDIVSAIMELT 211


>At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 473

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 163 FQNWKMQVHQMQVESQTRLLELTSSANR 246
           FQ WK + H    E +TR ++  SS NR
Sbjct: 139 FQTWKNKYHMKIPEVETRFVDRVSSENR 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,444,083
Number of Sequences: 28952
Number of extensions: 242904
Number of successful extensions: 688
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)