Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120054.Seq
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g25070.1 68418.m02971 expressed protein 36 0.026
At3g54630.1 68416.m06044 expressed protein weak similarity to re... 33 0.14
At2g28250.1 68415.m03429 protein kinase family protein contains ... 29 3.0
At1g15040.2 68414.m01798 glutamine amidotransferase-related 29 3.9
At1g15040.1 68414.m01797 glutamine amidotransferase-related 29 3.9
At4g24840.1 68417.m03558 expressed protein 28 6.9
At5g35715.1 68418.m04271 cytochrome P450 71B8, putative (CYP71B8... 27 9.1
At4g01780.1 68417.m00233 XH/XS domain-containing protein contain... 27 9.1
At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containi... 27 9.1
At1g14840.1 68414.m01775 expressed protein 27 9.1
>At5g25070.1 68418.m02971 expressed protein
Length = 736
Score = 35.9 bits (79), Expect = 0.026
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +3
Query: 105 LVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYTGFQEL 257
++ +K E L + E + ++ K+K+I+ D Q+ V +N + TGF+EL
Sbjct: 381 ILQKKKEHLANELEELLALVKAKEKEIDENDSQIEAVEERINNVVTGFKEL 431
>At3g54630.1 68416.m06044 expressed protein weak similarity to
retinoblastoma-associated protein HEC [Homo sapiens]
GI:2501873
Length = 568
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +3
Query: 21 IKQQEEKNKQLVTKLIATFTEHTNALQGLVAQKTEELFKKQEFIERIIAIKDKQIEAKDL 200
+K E + ++ +T+ A++ +V +K +EL K+E ER I++++K+++ K +
Sbjct: 247 VKADLENDVNKFRTIVVEYTDRNPAMEKVVEEKAKELKAKEEERER-ISVENKELK-KSV 304
Query: 201 QVTRV-MTDLNRMYTGFQELCRE 266
++ D+NRM Q + R+
Sbjct: 305 ELQNFSAADVNRMRRELQAVERD 327
>At2g28250.1 68415.m03429 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 565
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -3
Query: 190 ASICLSLIAMMRSINSCFLKSSSVFCATSP 101
+S+ S I++ S+ CF +++S+FC + P
Sbjct: 159 SSVSQSKISISSSVAGCFFQNASLFCVSKP 188
>At1g15040.2 68414.m01798 glutamine amidotransferase-related
Length = 333
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 141 QEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYT 242
QEF++ +IA + KQ+ A +++ R T L + ++
Sbjct: 268 QEFVKAVIAFQKKQVNATQVEMKRKTTTLVKSFS 301
>At1g15040.1 68414.m01797 glutamine amidotransferase-related
Length = 395
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 141 QEFIERIIAIKDKQIEAKDLQVTRVMTDLNRMYT 242
QEF++ +IA + KQ+ A +++ R T L + ++
Sbjct: 268 QEFVKAVIAFQKKQVNATQVEMKRKTTTLVKSFS 301
>At4g24840.1 68417.m03558 expressed protein
Length = 756
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -1
Query: 522 RPDILTTMLAASMLRLCFWL-STYVFWPVIAVNVVPSRVTHSTGC 391
+ D+L A LRL L S Y FW A+N S + S GC
Sbjct: 473 KEDVLVFSAADKFLRLTLQLLSRYSFWVSSALNNRKSNASPSPGC 517
>At5g35715.1 68418.m04271 cytochrome P450 71B8, putative (CYP71B8)
nearly identical to Cytochrome P450 71B8 (SP:P58048)
[Arabidopsis thaliana];
Length = 433
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Frame = +2
Query: 281 HKKDELLQVKDTQV-SNLIAKMIDLSDRAVQYPADK--RKHPVLCVT---RDGTTFTAIT 442
H DE L++ +Q SNL++ M+D+ +R+ +Y + K H + +T G IT
Sbjct: 179 HVIDEELKIGQSQDHSNLVSSMLDMINRSTEYGSFKITSDHLIAMMTDIVLGGVNAGTIT 238
Query: 443 GQKTYVESQKHKR 481
T E +H R
Sbjct: 239 MIWTMTELTRHPR 251
>At4g01780.1 68417.m00233 XH/XS domain-containing protein contains
Pfam profiles PF03469: XH domain, PF03468: XS domain
Length = 456
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +3
Query: 24 KQQEEKNKQLVTKLIATFTEHTNALQGLVAQKTEELFKKQEFIERIIAIKDKQIEAKDLQ 203
K+ E K +L + TE + L ++ EEL +K +ER I Q++A +L+
Sbjct: 195 KKLEIKGNELAKPQVHNGTERMKLSEDLEQRQKEELHEKIIRLERQI----DQVQAIELE 250
Query: 204 VTRVMTDLNRM 236
V ++ LN M
Sbjct: 251 VEQLKGQLNVM 261
>At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 700
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 86 VLGKCRNQFSHQLFVLFLLLFNCGV 12
+ G CRN S ++F LF+LL N GV
Sbjct: 569 IRGCCRNGRSKEVFELFMLLENEGV 593
>At1g14840.1 68414.m01775 expressed protein
Length = 604
Score = 27.5 bits (58), Expect = 9.1
Identities = 22/110 (20%), Positives = 45/110 (40%)
Frame = +2
Query: 218 DRPQPHVHRVSGTMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDRAVQYPADKRKHP 397
D Q V + KD+ + KDE ++ ++AK ++ +A+ A K +
Sbjct: 501 DLLQKEVITLRKAAHEKDQSLRDKDEAIE--------MLAKKVETLTKAMDVEAKKMRRE 552
Query: 398 VLCVTRDGTTFTAITGQKTYVESQKHKRNIDAANIVVRISGLILPSIGTT 547
V + ++ + K +S+ + ++ N +SG + IG T
Sbjct: 553 VAVMGKEVAAMRVV--DKGQQDSKTRRLSVSKGNTAQLLSGRVSGRIGMT 600
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,301,875
Number of Sequences: 28952
Number of extensions: 261511
Number of successful extensions: 886
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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