Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120048.Seq
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50410.1 68416.m05514 Dof-type zinc finger domain-containing ...    30   1.9  
At1g56280.2 68414.m06470 drought-responsive family protein conta...    29   3.4  
At1g56280.1 68414.m06469 drought-responsive family protein conta...    29   3.4  
At4g26590.1 68417.m03833 oligopeptide transporter OPT family pro...    29   4.5  
At3g52440.1 68416.m05767 Dof-type zinc finger domain-containing ...    28   5.9  
At3g32920.1 68416.m04171 recA family protein contains Pfam profi...    28   7.9  
At2g14830.1 68415.m01680 expressed protein contains Pfam profile...    28   7.9  

>At3g50410.1 68416.m05514 Dof-type zinc finger domain-containing
           protein 
          Length = 253

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 303 TEPLSSLSSRSACPRCGKSRMYFCY 377
           T P+S    +  CPRC  S   FCY
Sbjct: 20  TVPISDQQEQLPCPRCDSSNTKFCY 44


>At1g56280.2 68414.m06470 drought-responsive family protein contains
           an AT-AC intron 3, potentially contains a frameshift. An
           alternate model provides a translation more consistent
           with homologous proteins but lacks the AT-AC intron;
           similar to drought-induced mRNA, Di19 [Arabidopsis
           thaliana] gi|469110|emb|CAA55321
          Length = 112

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +3

Query: 336 ACPRCGKSRMYFCYVCFIPVP-ALEGK---IPYCKLPIKVDIIKHK 461
           ACP C +S       C I     LE K    P C L + VDI+ HK
Sbjct: 36  ACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVAHK 81


>At1g56280.1 68414.m06469 drought-responsive family protein contains
           an AT-AC intron 3, potentially contains a frameshift. An
           alternate model provides a translation more consistent
           with homologous proteins but lacks the AT-AC intron;
           similar to drought-induced mRNA, Di19 [Arabidopsis
           thaliana] gi|469110|emb|CAA55321
          Length = 200

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +3

Query: 336 ACPRCGKSRMYFCYVCFIPVP-ALEGK---IPYCKLPIKVDIIKHK 461
           ACP C +S       C I     LE K    P C L + VDI+ HK
Sbjct: 36  ACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVAHK 81


>At4g26590.1 68417.m03833 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 753

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 509 GKNSSMGCSAFTINLSFVFDNIHFYW*FTVRYFSFKCWYWNKA 381
           GK + +        LSF +  +  Y   ++ Y SF CW W ++
Sbjct: 217 GKQTKLRFFLIVFFLSFTYYIVPGYLFPSISYLSFVCWIWTRS 259


>At3g52440.1 68416.m05767 Dof-type zinc finger domain-containing
           protein DNA binding protein - Hordeum
           vulgare,PID:e1334094
          Length = 247

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 336 ACPRCGKSRMYFCY 377
           +CPRCG S   FCY
Sbjct: 26  SCPRCGSSNTKFCY 39


>At3g32920.1 68416.m04171 recA family protein contains Pfam profile:
           PF00154 recA bacterial DNA recombination protein
          Length = 229

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +3

Query: 438 KVDIIKHKGEINGKSTAAHAAVLAHGMSQCTHIQIFQIILLMERLFCCFL 587
           KV  +  KGE++G+   AH A+ A  MSQ   ++ F   LL+ +    F+
Sbjct: 108 KVAALVPKGELDGEMGDAHMAIQARLMSQA--LRKFSHSLLLSQTLLIFI 155


>At2g14830.1 68415.m01680 expressed protein contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 454

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +1

Query: 475 VKALQPMLLFLPTGCHSVHISRYSRLSY*WKGCFVVSWS*GKICARLIQSTTKSAFILRN 654
           +  L P LL LPT       SRY R  +    CF+  W     C  +++       +L+N
Sbjct: 43  LNTLSPDLLHLPTP--DTPCSRYKRTEHDTMFCFLFGWRRTSKCKSVVKQLQCRLNLLKN 100

Query: 655 YVITTASWL 681
                +S L
Sbjct: 101 KKYAISSHL 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,154,071
Number of Sequences: 28952
Number of extensions: 300272
Number of successful extensions: 710
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)