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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060090.seq
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica...   133   1e-31
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica...   133   1e-31
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ...   130   1e-30
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ...   117   8e-27
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ...   117   8e-27
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ...   117   8e-27
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar...   111   4e-25
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...   109   2e-24
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...   103   1e-22
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar...   100   8e-22
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ...    99   3e-21
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ...    99   3e-21
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila...    98   4e-21
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila...    91   5e-19
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar...    91   6e-19
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar...    87   1e-17
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila...    79   4e-15
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative           77   8e-15
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden...    77   8e-15
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar...    77   1e-14
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s...    75   3e-14
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA...    72   4e-13
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he...    66   2e-11
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c...    63   2e-10
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c...    63   2e-10
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id...    62   3e-10
At3g13920.1 68416.m01758 eukaryotic translation initiation facto...    62   3e-10
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai...    62   3e-10
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative              61   8e-10
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)...    60   1e-09
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)...    60   1e-09
At1g51380.1 68414.m05780 eukaryotic translation initiation facto...    60   1e-09
At1g54270.1 68414.m06187 eukaryotic translation initiation facto...    60   1e-09
At1g72730.1 68414.m08410 eukaryotic translation initiation facto...    59   2e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila...    59   3e-09
At3g19760.1 68416.m02501 eukaryotic translation initiation facto...    58   4e-09
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co...    58   7e-09
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila...    57   9e-09
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila...    57   9e-09
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)...    56   3e-08
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)...    55   4e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)...    55   4e-08
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)...    54   7e-08
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)       54   1e-07
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila...    54   1e-07
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ...    53   2e-07
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ...    53   2e-07
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai...    53   2e-07
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim...    52   3e-07
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar...    51   6e-07
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /...    51   6e-07
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar...    50   1e-06
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila...    50   1e-06
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai...    50   1e-06
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila...    48   4e-06
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative              44   1e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)...    41   9e-04
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)...    37   0.011
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila...    35   0.044
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative              34   0.10 
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)...    34   0.10 
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)...    34   0.10 
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he...    33   0.23 
At2g28600.1 68415.m03476 expressed protein                             31   0.54 
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY...    31   0.94 
At4g03070.1 68417.m00415 2-oxoglutarate-dependent dioxygenase (A...    29   2.2  
At1g11920.1 68414.m01376 pectate lyase family protein similar to...    29   2.9  
At4g35470.1 68417.m05041 leucine-rich repeat family protein simi...    28   5.0  
At3g04670.1 68416.m00500 WRKY family transcription factor simila...    28   5.0  
At5g22180.1 68418.m02582 hypothetical protein                          28   6.6  
At5g48950.2 68418.m06055 thioesterase family protein contains Pf...    27   8.8  
At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containi...    27   8.8  
At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containi...    27   8.8  
At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein lo...    27   8.8  
At1g01800.1 68414.m00099 short-chain dehydrogenase/reductase (SD...    27   8.8  

>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 591

 Score =  133 bits (321), Expect = 1e-31
 Identities = 65/85 (76%), Positives = 70/85 (82%)
 Frame = +2

Query: 254 SADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLV 433
           S  FG  S VR+TC++GGAPK  Q RDL RGVEIVIATPGRLID LE   TNL+R TYLV
Sbjct: 258 SRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLV 317

Query: 434 LDEADRMLDMGFEPQIRKIIEQIRP 508
           LDEADRMLDMGFEPQIRKI+ QIRP
Sbjct: 318 LDEADRMLDMGFEPQIRKIVSQIRP 342



 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 29/42 (69%), Positives = 37/42 (88%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
           +TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELA 251



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/46 (54%), Positives = 33/46 (71%)
 Frame = +1

Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL 642
           P+RQTL+WSATWP+EV+ LA  +L D  +  IGS  L AN +I Q+
Sbjct: 342 PDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQV 387



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 16/33 (48%), Positives = 27/33 (81%)
 Frame = +1

Query: 10  VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
           + + +  +G+ EPTPIQAQGWP+A+ G++L+G+
Sbjct: 176 ILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGI 208


>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 484

 Score =  133 bits (321), Expect = 1e-31
 Identities = 65/85 (76%), Positives = 70/85 (82%)
 Frame = +2

Query: 254 SADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLV 433
           S  FG  S VR+TC++GGAPK  Q RDL RGVEIVIATPGRLID LE   TNL+R TYLV
Sbjct: 258 SRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLV 317

Query: 434 LDEADRMLDMGFEPQIRKIIEQIRP 508
           LDEADRMLDMGFEPQIRKI+ QIRP
Sbjct: 318 LDEADRMLDMGFEPQIRKIVSQIRP 342



 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 29/42 (69%), Positives = 37/42 (88%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
           +TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELA 251



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/46 (54%), Positives = 33/46 (71%)
 Frame = +1

Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL 642
           P+RQTL+WSATWP+EV+ LA  +L D  +  IGS  L AN +I Q+
Sbjct: 342 PDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQV 387



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 16/33 (48%), Positives = 27/33 (81%)
 Frame = +1

Query: 10  VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
           + + +  +G+ EPTPIQAQGWP+A+ G++L+G+
Sbjct: 176 ILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGI 208


>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
           similar to ethylene-responsive RNA helicase GI:5669638
           from [Lycopersicon esculentum]; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 501

 Score =  130 bits (313), Expect = 1e-30
 Identities = 57/85 (67%), Positives = 70/85 (82%)
 Frame = +2

Query: 254 SADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLV 433
           ++ FG +S ++ TC++GG PK  Q RDL++GVEIVIATPGRLID +E   TNL+R TYLV
Sbjct: 192 ASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLV 251

Query: 434 LDEADRMLDMGFEPQIRKIIEQIRP 508
           LDEADRMLDMGF+PQIRKI+  IRP
Sbjct: 252 LDEADRMLDMGFDPQIRKIVSHIRP 276



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 32/42 (76%), Positives = 37/42 (88%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
           +TGSGKTL+Y+LPAIVH+N QP +  GDGPI LVLAPTRELA
Sbjct: 144 ETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELA 185



 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 24/46 (52%), Positives = 34/46 (73%)
 Frame = +1

Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL 642
           P+RQTL WSATWPKEV++L++ +L +  ++ IGS  L AN  I Q+
Sbjct: 276 PDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQI 321



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = +1

Query: 10  VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
           V + VK  G+ EPTPIQ+QGWP+AM G++L+G+
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGI 142


>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 619

 Score =  117 bits (281), Expect = 8e-27
 Identities = 57/102 (55%), Positives = 74/102 (72%)
 Frame = +2

Query: 212 LGAYQRVSTTNSASSADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 391
           L   + ++T     +  FG +S +  TC++GGAPK  Q RDLERG +IV+ATPGRL D L
Sbjct: 236 LSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL 295

Query: 392 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPTDR 517
           E    +L++ +YLVLDEADRMLDMGFEPQIRKI+++I PT R
Sbjct: 296 EMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEI-PTKR 336



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
 Frame = +1

Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQL*IFVKNMKKK 672
           RQTLM++ATWPK V+K+A D L +  Q+NIG++ +L AN +I Q    V  M+K+
Sbjct: 336 RQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQ 390



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 18/36 (50%), Positives = 26/36 (72%)
 Frame = +1

Query: 7   EVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
           E+ + V + G+  PTPIQAQ WPIAM G+++V + K
Sbjct: 168 ELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 22/42 (52%), Positives = 28/42 (66%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
           +TGSGKTL Y++P  +H+       R  GP  LVL+PTRELA
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243


>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 619

 Score =  117 bits (281), Expect = 8e-27
 Identities = 57/102 (55%), Positives = 74/102 (72%)
 Frame = +2

Query: 212 LGAYQRVSTTNSASSADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 391
           L   + ++T     +  FG +S +  TC++GGAPK  Q RDLERG +IV+ATPGRL D L
Sbjct: 236 LSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL 295

Query: 392 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPTDR 517
           E    +L++ +YLVLDEADRMLDMGFEPQIRKI+++I PT R
Sbjct: 296 EMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEI-PTKR 336



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
 Frame = +1

Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQL*IFVKNMKKK 672
           RQTLM++ATWPK V+K+A D L +  Q+NIG++ +L AN +I Q    V  M+K+
Sbjct: 336 RQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQ 390



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 18/36 (50%), Positives = 26/36 (72%)
 Frame = +1

Query: 7   EVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
           E+ + V + G+  PTPIQAQ WPIAM G+++V + K
Sbjct: 168 ELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 22/42 (52%), Positives = 28/42 (66%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
           +TGSGKTL Y++P  +H+       R  GP  LVL+PTRELA
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243


>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 618

 Score =  117 bits (281), Expect = 8e-27
 Identities = 57/102 (55%), Positives = 74/102 (72%)
 Frame = +2

Query: 212 LGAYQRVSTTNSASSADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 391
           L   + ++T     +  FG +S +  TC++GGAPK  Q RDLERG +IV+ATPGRL D L
Sbjct: 236 LSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL 295

Query: 392 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPTDR 517
           E    +L++ +YLVLDEADRMLDMGFEPQIRKI+++I PT R
Sbjct: 296 EMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEI-PTKR 336



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
 Frame = +1

Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQL*IFVKNMKKK 672
           RQTLM++ATWPK V+K+A D L +  Q+NIG++ +L AN +I Q    V  M+K+
Sbjct: 336 RQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQ 390



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 18/36 (50%), Positives = 26/36 (72%)
 Frame = +1

Query: 7   EVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
           E+ + V + G+  PTPIQAQ WPIAM G+++V + K
Sbjct: 168 ELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 22/42 (52%), Positives = 28/42 (66%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
           +TGSGKTL Y++P  +H+       R  GP  LVL+PTRELA
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243


>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 713

 Score =  111 bits (267), Expect = 4e-25
 Identities = 53/102 (51%), Positives = 72/102 (70%)
 Frame = +2

Query: 212 LGAYQRVSTTNSASSADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 391
           L   + ++T     +  FG +S +   C++GGAPK  Q +++ERGV+IV+ATPGRL D L
Sbjct: 307 LSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDIL 366

Query: 392 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPTDR 517
           E    +L + +YLVLDEADRMLDMGFEPQIRKI+ ++ PT R
Sbjct: 367 EMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEV-PTKR 407



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 25/44 (56%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
 Frame = +1

Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQ 639
           RQTLM++ATWPKEV+K+A D L +  Q+NIG++ +L AN +I Q
Sbjct: 407 RQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQ 450



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 22/42 (52%), Positives = 28/42 (66%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
           +TGSGKTL Y++P  +H+       R  GP  LVL+PTRELA
Sbjct: 274 KTGSGKTLGYLIPGFMHLQRIHNDSR-MGPTILVLSPTRELA 314



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +1

Query: 22  VKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
           V + G+  P+PIQAQ WPIAM  +++V + K
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAK 274


>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 1088

 Score =  109 bits (262), Expect = 2e-24
 Identities = 52/99 (52%), Positives = 69/99 (69%)
 Frame = +2

Query: 212 LGAYQRVSTTNSASSADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL 391
           L   + ++T     +  FG +S +  TC++GGAPK  Q ++LERG +IV+ATPGRL D L
Sbjct: 513 LAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDIL 572

Query: 392 EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP 508
           E    + Q+ + LVLDEADRMLDMGFEPQIRKI+ +I P
Sbjct: 573 EMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPP 611



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 29/57 (50%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
 Frame = +1

Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL-QLSANHNILQL*IFVKNMKKK 672
           P RQTLM++ATWPKEV+K+A D L + +Q+NIG + +L+AN  I Q    V  M+K+
Sbjct: 611 PRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKE 667



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 22/42 (52%), Positives = 30/42 (71%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
           +TGSGKTL Y++PA + + +     R +GP  L+LAPTRELA
Sbjct: 480 KTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELA 520



 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 15/36 (41%), Positives = 25/36 (69%)
 Frame = +1

Query: 7   EVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
           E+ + + + G+  PTPIQAQ WPIA+  +++V + K
Sbjct: 445 EILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAK 480


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score =  103 bits (246), Expect = 1e-22
 Identities = 46/80 (57%), Positives = 61/80 (76%)
 Frame = +2

Query: 263 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 442
           F + + V+    +GG P  +Q R+LERGV+I++ATPGRL D LE+G  +LQ   +L LDE
Sbjct: 247 FSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDE 306

Query: 443 ADRMLDMGFEPQIRKIIEQI 502
           ADRMLDMGFEPQIRKI++Q+
Sbjct: 307 ADRMLDMGFEPQIRKIVQQM 326



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 38/54 (70%)
 Frame = +1

Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKKK 672
           RQT+++SAT+P+E+++LA D+L +YI + +G +  S+   I+Q   FV +  K+
Sbjct: 334 RQTMLFSATFPREIQRLASDFLSNYIFLAVGRVG-SSTDLIVQRVEFVHDSDKR 386



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELA 236
           QTGSGKT A+  P I  I     I R  G     P+A++L+PTRELA
Sbjct: 191 QTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELA 237


>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 633

 Score =  100 bits (240), Expect = 8e-22
 Identities = 45/80 (56%), Positives = 60/80 (75%)
 Frame = +2

Query: 263 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 442
           F + + V+    +GG P  +Q R+LERGV+I++ATPGRL D LE+   ++Q   +L LDE
Sbjct: 260 FSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDE 319

Query: 443 ADRMLDMGFEPQIRKIIEQI 502
           ADRMLDMGFEPQIRKI+EQ+
Sbjct: 320 ADRMLDMGFEPQIRKIVEQM 339



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 22/54 (40%), Positives = 38/54 (70%)
 Frame = +1

Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKKK 672
           RQTL++SAT+P+E+++LA D+L +YI + +G +  S+   I+Q   FV +  K+
Sbjct: 347 RQTLLFSATFPREIQRLAADFLANYIFLAVGRVG-SSTDLIVQRVEFVLDSDKR 399



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELA 236
           QTGSGKT A+  P I  I     ++R  G     P+A++L+PTRELA
Sbjct: 204 QTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELA 250


>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 44/80 (55%), Positives = 59/80 (73%)
 Frame = +2

Query: 263 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 442
           F + + V+    +GG P  +Q R+LERG +I++ATPGRL D LE+   ++Q   +L LDE
Sbjct: 252 FSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDE 311

Query: 443 ADRMLDMGFEPQIRKIIEQI 502
           ADRMLDMGFEPQIRKI+EQ+
Sbjct: 312 ADRMLDMGFEPQIRKIVEQM 331



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 19/54 (35%), Positives = 36/54 (66%)
 Frame = +1

Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKKK 672
           RQT+++SAT+P ++++LA D++ +YI + +G +  S+   I Q   FV+   K+
Sbjct: 339 RQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKR 391



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELA 236
           QTGSGKT A+  P I  I     + R  G     P A++L+PTRELA
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELA 242


>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 44/80 (55%), Positives = 59/80 (73%)
 Frame = +2

Query: 263 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 442
           F + + V+    +GG P  +Q R+LERG +I++ATPGRL D LE+   ++Q   +L LDE
Sbjct: 252 FSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDE 311

Query: 443 ADRMLDMGFEPQIRKIIEQI 502
           ADRMLDMGFEPQIRKI+EQ+
Sbjct: 312 ADRMLDMGFEPQIRKIVEQM 331



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 19/54 (35%), Positives = 36/54 (66%)
 Frame = +1

Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKKK 672
           RQT+++SAT+P ++++LA D++ +YI + +G +  S+   I Q   FV+   K+
Sbjct: 339 RQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKR 391



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELA 236
           QTGSGKT A+  P I  I     + R  G     P A++L+PTRELA
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELA 242


>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
           to RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 760

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 44/76 (57%), Positives = 57/76 (75%)
 Frame = +2

Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 460
           +R + V+GG  K EQ ++L+ G EIV+ATPGRLID L+     + R +YLVLDEADRM D
Sbjct: 330 LRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFD 389

Query: 461 MGFEPQIRKIIEQIRP 508
           +GFEPQ+R I+ QIRP
Sbjct: 390 LGFEPQVRSIVGQIRP 405



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 26/42 (61%), Positives = 35/42 (83%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
           +TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA
Sbjct: 273 KTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELA 314



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 21/46 (45%), Positives = 34/46 (73%)
 Frame = +1

Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL 642
           P+RQTL++SAT P +V+KLA + L D I++ +G + + AN +I Q+
Sbjct: 405 PDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGM-ANEDITQV 449



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +1

Query: 7   EVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
           ++   +K   Y++PT IQ Q  PI +SG++++G+ K
Sbjct: 238 QIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAK 273


>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
           to RNA helicase GB:A57514 GI:897915 from [Rattus
           norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 989

 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 43/74 (58%), Positives = 56/74 (75%), Gaps = 3/74 (4%)
 Frame = +2

Query: 296 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMG 466
           V+GG+   +Q  +L+RG EIV+ TPGR+ID L   +   TNL+R TYLV+DEADRM DMG
Sbjct: 503 VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMG 562

Query: 467 FEPQIRKIIEQIRP 508
           FEPQI +I++ IRP
Sbjct: 563 FEPQITRIVQNIRP 576



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 27/41 (65%), Positives = 34/41 (82%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 233
           +TGSGKTL ++LP + HI +QPP+  GDGPI LV+APTREL
Sbjct: 441 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTREL 481



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = +1

Query: 22  VKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
           +K + Y++P PIQAQ  PI MSG++ +GV K
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAK 441



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 18/46 (39%), Positives = 31/46 (67%)
 Frame = +1

Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL 642
           P+RQT+++SAT+P++V+ LA   L   ++I +G   +  N +I QL
Sbjct: 576 PDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSV-VNKDITQL 620


>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
           RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 1166

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 44/79 (55%), Positives = 58/79 (73%), Gaps = 3/79 (3%)
 Frame = +2

Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADR 451
           +R   V+GG+   +Q  +L+RG EIV+ TPGR+ID L   +   TNL+R T+LV+DEADR
Sbjct: 631 IRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADR 690

Query: 452 MLDMGFEPQIRKIIEQIRP 508
           M DMGFEPQI +II+ IRP
Sbjct: 691 MFDMGFEPQITRIIQNIRP 709



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 27/41 (65%), Positives = 34/41 (82%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 233
           +TGSGKTL ++LP + HI +QPP+  GDGPI LV+APTREL
Sbjct: 574 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTREL 614



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +1

Query: 22  VKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
           +K + Y++P PIQ Q  PI MSG++ +GV K
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAK 574



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 18/46 (39%), Positives = 30/46 (65%)
 Frame = +1

Query: 505 PNRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL 642
           P RQT+++SAT+P++V+ LA   L   ++I +G   +  N +I QL
Sbjct: 709 PERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSV-VNKDITQL 753


>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
           SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 733

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 43/86 (50%), Positives = 56/86 (65%)
 Frame = +2

Query: 263 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 442
           F H    R T + GG    EQ   + +G EIVIATPGRLID LE+    L +C Y+VLDE
Sbjct: 412 FAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDE 471

Query: 443 ADRMLDMGFEPQIRKIIEQIRPTDRL 520
           ADRM+DMGFEPQ+  +++ + P+  L
Sbjct: 472 ADRMIDMGFEPQVAGVLDAM-PSSNL 496



 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 23/45 (51%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELA 236
           +TGSGKT A++LP + +I+  PP+      +GP A+V+APTRELA
Sbjct: 358 ETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELA 402



 Score = 32.7 bits (71), Expect = 0.23
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +1

Query: 7   EVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
           E+ + V+  GYK+P+PIQ    P+ +  ++++G+
Sbjct: 323 ELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGI 356


>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
           to p68 RNA helicase [Schizosaccharomyces pombe]
           GI:173419
          Length = 537

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 39/97 (40%), Positives = 56/97 (57%)
 Frame = +2

Query: 203 CFGLGAYQRVSTTNSASSADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 382
           C  L   + ++   S    + G    +++ CV+GG+ K  Q   +  GV+IVI TPGRL 
Sbjct: 194 CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLR 253

Query: 383 DFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKII 493
           D +E     L   +++VLDEADRMLDMGFE  +R I+
Sbjct: 254 DLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFIL 290



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 21/45 (46%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
 Frame = +1

Query: 511 RQTLMWSATWPKEVKKLAEDYLG-DYIQINIGSLQLSANHNILQL 642
           RQ +M+SATWP +V KLA++++  + I++ IGS+ L+ANH+++Q+
Sbjct: 297 RQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQI 341



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELA 236
           +TGSGKTLA+ +PAI+H+      I  G     P  LVL+PTRELA
Sbjct: 159 KTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELA 204



 Score = 34.7 bits (76), Expect = 0.058
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = +1

Query: 37  YKEPTPIQAQGWPIAMSGKNLVGVLK 114
           +++P+PIQ+  WP  + G++L+G+ K
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAK 159


>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 
          Length = 591

 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 35/75 (46%), Positives = 48/75 (64%)
 Frame = +2

Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 460
           +R+    GG   R Q   ++RGV IV+ATPGRL D L K   +L  C YL LDEADR++D
Sbjct: 257 LRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVD 316

Query: 461 MGFEPQIRKIIEQIR 505
           +GFE  IR++ +  +
Sbjct: 317 LGFEDDIREVFDHFK 331



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
 Frame = +3

Query: 114 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELA 236
           TGSGKTL ++LP I+    +    PI  G+GPI L++ P+RELA
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELA 235



 Score = 36.7 bits (81), Expect = 0.014
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = +1

Query: 22  VKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
           +K  G  +PTPIQ QG P+ ++G++++G+
Sbjct: 161 LKEKGIVQPTPIQVQGLPVILAGRDMIGI 189



 Score = 31.9 bits (69), Expect = 0.41
 Identities = 18/53 (33%), Positives = 31/53 (58%)
 Frame = +1

Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKK 669
           RQTL++SAT P +++  A   L   + +N+G    +AN +++Q   +VK   K
Sbjct: 334 RQTLLFSATMPTKIQIFARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAK 385


>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain, PF00098: Zinc knuckle
          Length = 747

 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 37/80 (46%), Positives = 50/80 (62%)
 Frame = +2

Query: 278 YVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML 457
           Y+   CV+GG     Q   L RGV++V+ TPGR+ID +E  +  L    YLVLDEAD+ML
Sbjct: 206 YLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQML 265

Query: 458 DMGFEPQIRKIIEQIRPTDR 517
            +GFE  +  I+E + PT R
Sbjct: 266 AVGFEEAVESILENL-PTKR 284



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
 Frame = +3

Query: 105 RTQTGSGKTLAYILPAIVHINNQ----PPIRR-GDGPIALVLAPTRELA 236
           R +TG+GKTLA+ +P I  +  +       RR G  P  LVLAPTRELA
Sbjct: 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELA 193



 Score = 32.3 bits (70), Expect = 0.31
 Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +1

Query: 499 NTPN-RQTLMWSATWPKEVKKLAEDYLGDYIQINI 600
           N P  RQ++++SAT P  VKKLA  YL + + I++
Sbjct: 279 NLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313


>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
           RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 616

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 30/70 (42%), Positives = 49/70 (70%)
 Frame = +2

Query: 293 CVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 472
           C++GG P  +Q R L+ GV++ + TPGR+ID +++G  NL    ++VLDEAD+ML +GF 
Sbjct: 209 CLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFA 268

Query: 473 PQIRKIIEQI 502
             +  I+E++
Sbjct: 269 EDVEIILEKL 278



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = +3

Query: 33  GLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIAL 209
           G+++      + L  +   ++   R +TG+GKTLA+ +P I  I        RG  P+ L
Sbjct: 123 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCL 182

Query: 210 VLAPTRELA 236
           VLAPTRELA
Sbjct: 183 VLAPTRELA 191


>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
           similar to RNA helicases GI:3775995, GI:3775987
           [Arabidopsis thaliana]; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 610

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 28/70 (40%), Positives = 49/70 (70%)
 Frame = +2

Query: 293 CVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 472
           C++GG P  +Q R+L  G+++ + TPGR+ID +++G  NL    ++VLDEAD+ML +GF 
Sbjct: 221 CLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFA 280

Query: 473 PQIRKIIEQI 502
             +  I++++
Sbjct: 281 EDVEIILQKL 290



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +3

Query: 24  KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINN-QPPIRRGDGP 200
           K  G+++      + L  +   ++   R +TG+GKTLA+ +P I  I        RG  P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191

Query: 201 IALVLAPTRELA 236
             LVLAPTRELA
Sbjct: 192 QCLVLAPTRELA 203


>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
           helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
          Length = 542

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 33/75 (44%), Positives = 46/75 (61%)
 Frame = +2

Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 460
           +R+    GG   R Q   +++GV IV+ATPGRL D L K   +L  C  L LDEADR++D
Sbjct: 208 LRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVD 267

Query: 461 MGFEPQIRKIIEQIR 505
           +GFE  IR + +  +
Sbjct: 268 LGFEDDIRHVFDHFK 282



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 3/44 (6%)
 Frame = +3

Query: 114 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELA 236
           TGSGKTL ++LP I+    +    PI  G+GPIALV+ P+RELA
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELA 186



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +1

Query: 22  VKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
           +K  G   PTPIQ QG P+ +SG++++G+
Sbjct: 112 LKDKGIMHPTPIQVQGLPVVLSGRDMIGI 140



 Score = 31.5 bits (68), Expect = 0.54
 Identities = 18/53 (33%), Positives = 31/53 (58%)
 Frame = +1

Query: 511 RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKK 669
           RQTL++SAT P +++  A   L   + +N+G    +AN +++Q   +VK   K
Sbjct: 285 RQTLLFSATMPAKIQIFATSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAK 336


>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
           helicase -Mus musculus,PIR2:I84741
          Length = 621

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 31/75 (41%), Positives = 44/75 (58%)
 Frame = +2

Query: 269 HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 448
           H +  R+  V GG+  R Q   L   +++V+ TPGR++  +E+G        YLVLDEAD
Sbjct: 214 HHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEAD 273

Query: 449 RMLDMGFEPQIRKII 493
            M D GF P+IRK +
Sbjct: 274 TMFDRGFGPEIRKFL 288



 Score = 35.5 bits (78), Expect = 0.033
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
 Frame = +3

Query: 108 TQTGSGKTLAYILPAIVHINNQPPIRRGD-----GPIALVLAPTRELA 236
           + TGSGKTLAY+LP IV +  +     G       P  +VL PTREL+
Sbjct: 156 SHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELS 202


>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
           contains Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 505

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 29/73 (39%), Positives = 41/73 (56%)
 Frame = +2

Query: 284 RNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDM 463
           +   V GG P   Q   +++GVE++I TPGR++D L K T  L      VLDE D ML  
Sbjct: 216 KTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQR 275

Query: 464 GFEPQIRKIIEQI 502
           GF  Q+ +I + +
Sbjct: 276 GFRDQVMQIFQAL 288



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = +3

Query: 114 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTREL 233
           TGSGKT ++++P I      +++ P  +   P+A+VLAPTREL
Sbjct: 156 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 198



 Score = 33.9 bits (74), Expect = 0.10
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +1

Query: 22  VKTMGYKEPTPIQAQGWPIAMSGKNLV 102
           ++T GY  PTPIQ Q  P A++GK+L+
Sbjct: 125 LETAGYDFPTPIQMQAIPAALTGKSLL 151


>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
           contains Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 368

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 29/73 (39%), Positives = 41/73 (56%)
 Frame = +2

Query: 284 RNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDM 463
           +   V GG P   Q   +++GVE++I TPGR++D L K T  L      VLDE D ML  
Sbjct: 79  KTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQR 138

Query: 464 GFEPQIRKIIEQI 502
           GF  Q+ +I + +
Sbjct: 139 GFRDQVMQIFQAL 151



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = +3

Query: 114 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTREL 233
           TGSGKT ++++P I      +++ P  +   P+A+VLAPTREL
Sbjct: 19  TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61


>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 671

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 29/86 (33%), Positives = 50/86 (58%)
 Frame = +2

Query: 263 FGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDE 442
           +G +  + + C++GG     Q   L+RGV+IV+ TPGR+ D +E+   +     + VLDE
Sbjct: 197 YGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDE 256

Query: 443 ADRMLDMGFEPQIRKIIEQIRPTDRL 520
           AD ML MGF   +  I+ ++  + ++
Sbjct: 257 ADEMLRMGFVEDVELILGKVEDSTKV 282



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = +3

Query: 18  RCKDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRR--- 188
           + K NG++      +S         +   R +TG GKTLA++LP +  + N P   +   
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKM 169

Query: 189 --GDGPIALVLAPTRELA 236
             G  P  LVL PTRELA
Sbjct: 170 GYGRSPSVLVLLPTRELA 187


>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
           4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
           contains Pfam profile PF00270: DEAD/DEAH box helicase;
           contains Pfam profile PF00271: Helicase conserved
           C-terminal domain
          Length = 412

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 31/74 (41%), Positives = 42/74 (56%)
 Frame = +2

Query: 287 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 466
           + CV GG   RE  R L+ GV +V+ TPGR+ D L++ +         VLDEAD ML  G
Sbjct: 139 HACV-GGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRG 197

Query: 467 FEPQIRKIIEQIRP 508
           F+ QI  I + + P
Sbjct: 198 FKDQIYDIFQLLPP 211


>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
           Pfam profiles  PF00270:DEAD/DEAH box helicase and
           PF00271:  Helicase conserved C-terminal domain;
           identical to cDNA RH27 helicase, partial GI:4033334
          Length = 633

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
 Frame = +2

Query: 296 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL-QRCTYLVLDEADRMLDMGFE 472
           V GG  ++ +A  L +GV +++ATPGRL+D LE     + +   +LV+DEADR+L+  FE
Sbjct: 260 VIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFE 319

Query: 473 PQIRKIIEQIRPT 511
             ++KI+  +  T
Sbjct: 320 EDLKKILNLLPKT 332



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 23/71 (32%), Positives = 37/71 (52%)
 Frame = +3

Query: 24  KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 203
           K+ G  R     +  +    + ++     +TGSGKTLA+++PA V +  +      +G  
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTG 228

Query: 204 ALVLAPTRELA 236
            LV+ PTRELA
Sbjct: 229 VLVICPTRELA 239



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 16  QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
           + +K MG+   T IQA+  P  M G++++G  +
Sbjct: 167 KSIKEMGFARMTQIQAKAIPPLMMGEDVLGAAR 199


>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
          Length = 528

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 28/72 (38%), Positives = 44/72 (61%)
 Frame = +2

Query: 302 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 481
           GG   R+    L + V +++ TPGR++D  +KG   L+ C  LV+DEAD++L + F+P I
Sbjct: 258 GGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSI 317

Query: 482 RKIIEQIRPTDR 517
            ++I Q  P  R
Sbjct: 318 EELI-QFLPESR 328



 Score = 33.1 bits (72), Expect = 0.18
 Identities = 12/43 (27%), Positives = 27/43 (62%)
 Frame = +1

Query: 1   RHEVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 129
           + ++ +G+   G+++P+PIQ +  PIA++G +++   K    K
Sbjct: 162 KRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/70 (24%), Positives = 34/70 (48%)
 Frame = +3

Query: 27  DNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 206
           + G ++        +  +    +   R + G+GKT A+ +P +  I+ +  + +     A
Sbjct: 171 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQ-----A 225

Query: 207 LVLAPTRELA 236
           ++L PTRELA
Sbjct: 226 VILVPTRELA 235



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 508 NRQTLMWSATWPKEVKKLAEDYLGDYIQINI 600
           +RQ LM+SAT+P  VK   + YL     IN+
Sbjct: 327 SRQILMFSATFPVTVKSFKDRYLKKPYIINL 357


>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
           identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
          Length = 498

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 27/72 (37%), Positives = 44/72 (61%)
 Frame = +2

Query: 302 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 481
           GG   R+    L + V +++ TPGR++D  +KG   L+ C  LV+DEAD++L   F+P +
Sbjct: 228 GGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSL 287

Query: 482 RKIIEQIRPTDR 517
            ++I Q  P +R
Sbjct: 288 EELI-QFLPQNR 298



 Score = 33.1 bits (72), Expect = 0.18
 Identities = 12/43 (27%), Positives = 27/43 (62%)
 Frame = +1

Query: 1   RHEVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 129
           + ++ +G+   G+++P+PIQ +  PIA++G +++   K    K
Sbjct: 132 KRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +3

Query: 27  DNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 206
           + G ++        +  +    +   R + G+GKT A+ +P +  I+    + +     A
Sbjct: 141 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----A 195

Query: 207 LVLAPTRELA 236
           ++L PTRELA
Sbjct: 196 MILVPTRELA 205



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 508 NRQTLMWSATWPKEVKKLAEDYLGDYIQINI 600
           NRQ LM+SAT+P  VK   + +L     IN+
Sbjct: 297 NRQFLMFSATFPVTVKAFKDRHLRKPYVINL 327


>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
           identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
          Length = 498

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 27/72 (37%), Positives = 44/72 (61%)
 Frame = +2

Query: 302 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 481
           GG   R+    L + V +++ TPGR++D  +KG   L+ C  LV+DEAD++L   F+P +
Sbjct: 228 GGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSL 287

Query: 482 RKIIEQIRPTDR 517
            ++I Q  P +R
Sbjct: 288 EELI-QFLPQNR 298



 Score = 33.1 bits (72), Expect = 0.18
 Identities = 12/43 (27%), Positives = 27/43 (62%)
 Frame = +1

Query: 1   RHEVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 129
           + ++ +G+   G+++P+PIQ +  PIA++G +++   K    K
Sbjct: 132 KRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +3

Query: 27  DNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 206
           + G ++        +  +    +   R + G+GKT A+ +P +  I+    + +     A
Sbjct: 141 EKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQ-----A 195

Query: 207 LVLAPTRELA 236
           ++L PTRELA
Sbjct: 196 MILVPTRELA 205



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 508 NRQTLMWSATWPKEVKKLAEDYLGDYIQINI 600
           NRQ LM+SAT+P  VK   + +L     IN+
Sbjct: 297 NRQFLMFSATFPVTVKAFKDRHLRKPYVINL 327


>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative
          Length = 392

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 32/83 (38%), Positives = 44/83 (53%)
 Frame = +2

Query: 233 STTNSASSADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNL 412
           S T     A   HT+   + C+ GG    E  + LERGV  V  TPGR+ D +++G+   
Sbjct: 104 SQTEKTIQAIGAHTNIQAHACI-GGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQT 162

Query: 413 QRCTYLVLDEADRMLDMGFEPQI 481
           +    LVLDE+D ML  G + QI
Sbjct: 163 KAVKLLVLDESDEMLSKGLKDQI 185


>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
           4A-2 / eIF-4A-2 similar to eukaryotic translation
           initiation factor 4A GI:19696 from [Nicotiana
           plumbaginifolia]
          Length = 412

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 31/74 (41%), Positives = 41/74 (55%)
 Frame = +2

Query: 287 NTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMG 466
           + CV GG   RE  R L+ GV +V+ TPGR+ D L + +         VLDEAD ML  G
Sbjct: 139 HACV-GGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRG 197

Query: 467 FEPQIRKIIEQIRP 508
           F+ QI  I + + P
Sbjct: 198 FKDQIYDIFQLLPP 211


>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative similar to Eukaryotic
           initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
           identical to (putative) RNA helicase GB:CAA09211
           [Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
           628-636 (1999))
          Length = 414

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 30/68 (44%), Positives = 38/68 (55%)
 Frame = +2

Query: 293 CVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE 472
           CV GG   RE  R L+ GV +V+ TPGR+ D L + +         VLDEAD ML  GF+
Sbjct: 143 CV-GGTSVREDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFK 201

Query: 473 PQIRKIIE 496
            QI  I +
Sbjct: 202 DQIYDIFQ 209


>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
           to RNA helicase GI:3776027 from [Arabidopsis thaliana]
          Length = 513

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
 Frame = +2

Query: 260 DFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFL-EKGTTNLQRCTYLVL 436
           + G  + +R + + GG    +Q  +L +G +++IATPGRL+  L E     L+   Y+V 
Sbjct: 120 ELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVF 179

Query: 437 DEADRMLDMGFEPQIRKIIEQI 502
           DEAD +  MGF  Q+ +I+ Q+
Sbjct: 180 DEADSLFGMGFAEQLHQILTQL 201



 Score = 36.7 bits (81), Expect = 0.014
 Identities = 19/42 (45%), Positives = 29/42 (69%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
           +TGSGKT A+++P +  +    P  +G G  AL+L+PTR+LA
Sbjct: 73  RTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLA 111



 Score = 33.9 bits (74), Expect = 0.10
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 10  VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLK 114
           V   +K  GYK PTPIQ +  P+ +SG ++V + +
Sbjct: 39  VFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMAR 73


>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative / DEAD box RNA helicase,
           putative contains DEAD/DEAH helicase domain; similar to
           RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
           identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
          Length = 408

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 28/80 (35%), Positives = 43/80 (53%)
 Frame = +2

Query: 269 HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 448
           H +   + C+ GG    E  R LE GV +V  TPGR+ D +++ +   +    L+LDE+D
Sbjct: 129 HANIQAHACI-GGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESD 187

Query: 449 RMLDMGFEPQIRKIIEQIRP 508
            ML  GF+ QI  +   + P
Sbjct: 188 EMLSRGFKDQIYDVYRYLPP 207


>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
           non-consensus acceptor splice site AT at exon 2; similar
           to DEAD box helicase protein GB:NP_006764 from [Homo
           sapiens], contains Pfam profile: PF00270  DEAD/DEAH box
           helicase
          Length = 568

 Score = 57.6 bits (133), Expect = 7e-09
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
 Frame = +2

Query: 230 VSTTNSASSADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTN 409
           + T N A      H+  V  + V GG  +R +A+ +  G  +VIATPGRL+D L+     
Sbjct: 175 IQTKNVAEELLKHHSQTV--SMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAF 232

Query: 410 L-QRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPTDRL*CGQLLGPKK*RNLLRIT 574
           + +    LV+DEADR+L+  FE  + KI++ +  T +          K ++L R++
Sbjct: 233 IYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVS 288



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +3

Query: 24  KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAI-VHINNQPPIRRGDGP 200
           K+ G Q      +  +      K+     +TGSGKTLA+++PA+ +    +   R G G 
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG- 163

Query: 201 IALVLAPTRELA 236
             +V+ PTRELA
Sbjct: 164 -VIVICPTRELA 174


>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 23/64 (35%), Positives = 40/64 (62%)
 Frame = +2

Query: 302 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 481
           GG   ++    L + V +++ TPGR++D  +KG   L+ C+ LV+DEAD++L   F+P +
Sbjct: 235 GGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSV 294

Query: 482 RKII 493
             +I
Sbjct: 295 EHLI 298



 Score = 34.3 bits (75), Expect = 0.076
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +1

Query: 1   RHEVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 129
           + E+  G+   G++ P+PIQ +  PIA++G++++   K    K
Sbjct: 139 KRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181


>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 23/64 (35%), Positives = 40/64 (62%)
 Frame = +2

Query: 302 GGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 481
           GG   ++    L + V +++ TPGR++D  +KG   L+ C+ LV+DEAD++L   F+P +
Sbjct: 235 GGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSV 294

Query: 482 RKII 493
             +I
Sbjct: 295 EHLI 298



 Score = 34.3 bits (75), Expect = 0.076
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +1

Query: 1   RHEVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVLKRVPAK 129
           + E+  G+   G++ P+PIQ +  PIA++G++++   K    K
Sbjct: 139 KRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181


>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
           probable replication protein A1, Oryza sativa,
           EMBL:AF009179
          Length = 456

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
 Frame = +2

Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRM 454
           +R   + GG  + +Q   L +   +++ATPGRL D +   KG + L+   YLVLDEADR+
Sbjct: 118 LRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFS-LKSLKYLVLDEADRL 176

Query: 455 LDMGFEPQIRKIIEQIRPTDR 517
           L+  FE  + +I+E+I P +R
Sbjct: 177 LNEDFEKSLNQILEEI-PLER 196



 Score = 36.3 bits (80), Expect = 0.019
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +1

Query: 1   RHEVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
           R E+ +  + +G+K P+ IQA+  P A+ GK+++G+
Sbjct: 17  REELVKACERLGWKNPSKIQAEALPFALEGKDVIGL 52



 Score = 33.1 bits (72), Expect = 0.18
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
 Frame = +3

Query: 21  CKDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHI-----NNQPPIR 185
           C+  G +      +  L  +   K+     QTGSGKT A+ +P +  +     +++P   
Sbjct: 24  CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKG 83

Query: 186 RGDGP--IALVLAPTRELA 236
           R   P   A VL+PTRELA
Sbjct: 84  RRPDPAFFACVLSPTRELA 102


>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
           similar to RNA helicase GB:CAA09204 from [Arabidopsis
           thaliana]; identical to cDNA DEAD box RNA helicase, RH13
           GI:3776002
          Length = 832

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
 Frame = +2

Query: 296 VFGGAPKREQARDLERGVEIVIATPGRLIDFL---EKGTTNLQRCTYLVLDEADRMLDMG 466
           + GG    +Q R L+   EIV+ATPGRL + +   EK    L   ++ VLDEADRM++ G
Sbjct: 313 IVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERG 372

Query: 467 FEPQIRKIIEQIRPTDR 517
              +++ I++ +  TD+
Sbjct: 373 HFRELQSILDLLPVTDK 389


>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
           identical to GB:CAA09207, contains a DEAD/DEAH box
           family ATP-dependent helicas signature; identical to
           cDNA DEAD box RNA helicase, RH17 GI:3776008
          Length = 609

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 25/68 (36%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
 Frame = +2

Query: 296 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQR-CTYLVLDEADRMLDMGFE 472
           V GG  K ++   L +G+ I+IATPGRL+D L+   + + +   +++ DEAD +L++G+ 
Sbjct: 139 VMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYG 198

Query: 473 PQIRKIIE 496
            +I +II+
Sbjct: 199 KEIEQIIK 206



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = +3

Query: 114 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTREL 233
           TG+GKT+AY+ P I H+  + P + R  G  ALV+ PTREL
Sbjct: 76  TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTREL 116



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +1

Query: 31  MGYKEPTPIQAQGWPIAMSGKNLV 102
           MG++ PT +QAQ  P+ +SG++++
Sbjct: 48  MGFEAPTLVQAQAIPVILSGRDVL 71


>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
           identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
          Length = 789

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
 Frame = +2

Query: 296 VFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG-TTNLQRCTYLVLDEADRMLDMGFE 472
           + GG   REQ   L    +IV+ATPGR+ID L    + +L     L+LDEADR+L  GF 
Sbjct: 272 IVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFA 331

Query: 473 PQIRKII 493
            +I +++
Sbjct: 332 TEITELV 338



 Score = 36.7 bits (81), Expect = 0.014
 Identities = 14/25 (56%), Positives = 22/25 (88%)
 Frame = +1

Query: 25  KTMGYKEPTPIQAQGWPIAMSGKNL 99
           +T+GYK+PTPIQA   P+A++G++L
Sbjct: 183 ETLGYKKPTPIQAACIPLALTGRDL 207



 Score = 34.7 bits (76), Expect = 0.058
 Identities = 19/41 (46%), Positives = 25/41 (60%)
 Frame = +3

Query: 114 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
           TGSGKT A+ LP +  +  +P  +R      L+L PTRELA
Sbjct: 213 TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELA 251


>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 
          Length = 593

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
 Frame = +2

Query: 281 VRNTCVFGGAPKREQARDLER-GVEIVIATPGRLIDFLEK-GTTNLQRCTYLVLDEADRM 454
           V +  + GG   +   + +E  G  ++I TPGRL D +E+    + +    L+LDEADR+
Sbjct: 120 VNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRL 179

Query: 455 LDMGFEPQIRKIIEQI 502
           L+MGF+ Q+  II ++
Sbjct: 180 LEMGFQRQVNYIISRL 195



 Score = 32.7 bits (71), Expect = 0.23
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
 Frame = +3

Query: 87  WKEFSWRTQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELA 236
           +K+ +    TGSGKTLA+++P +  +      PP  +    + ++++PTREL+
Sbjct: 53  YKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELS 103


>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicase GB:6321111 from (S.
           cerevisiae)
          Length = 558

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
 Frame = +2

Query: 281 VRNTCVFGGAPKREQARDLER-GVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRM 454
           V +  + GG         LE  G  ++I TPGRL D +++    + +    L+LDEADR+
Sbjct: 120 VNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRL 179

Query: 455 LDMGFEPQIRKIIEQI 502
           LDMGF+ Q+  II ++
Sbjct: 180 LDMGFQKQVNYIISRL 195



 Score = 35.5 bits (78), Expect = 0.033
 Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
 Frame = +3

Query: 114 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELA 236
           TGSGKTLA++LP I  I   N+ PP  +    + ++++PTREL+
Sbjct: 62  TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELS 103


>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
           similarity to RNA helicase RH25 [Arabidopsis thaliana]
           GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH31
           GI:3776030
          Length = 522

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 31/69 (44%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
 Frame = +2

Query: 320 EQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKI 490
           EQ R      +I++ATPGRL D +E      T L+    LVLDEAD +LDMGF   I +I
Sbjct: 174 EQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERI 233

Query: 491 IEQIRPTDR 517
           I  + P +R
Sbjct: 234 ISAV-PKER 241



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
 Frame = +3

Query: 24  KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGD--G 197
           KD G +       + L      K+   + +TG+GKT+A++LP+I  +   PP    +   
Sbjct: 70  KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRP 129

Query: 198 PI-ALVLAPTRELA 236
           PI ALV+ PTRELA
Sbjct: 130 PILALVICPTRELA 143


>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
           RNA helicase [Arabidopsis thaliana] GI:3776023; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 563

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
 Frame = +2

Query: 296 VFGGAPKREQARDLERG-VEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDM 463
           V GG     + R L++   +I++ATPGRL D ++  +   T L     LVLDEAD +LDM
Sbjct: 191 VIGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDM 250

Query: 464 GFEPQIRKIIEQI 502
           GF  +I +II  +
Sbjct: 251 GFRREIERIIAAV 263



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
 Frame = +3

Query: 90  KEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELA 236
           K+   + +TG+GKT+A++LP+I  +   PP  R +     I LV+ PTRELA
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELA 169


>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
           Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 465

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
 Frame = +2

Query: 338 ERGVEIVIATPGRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI 502
           E G  ++I TPGRL D +++    + +    L+LDEADR+LDMGF+ Q+  II ++
Sbjct: 133 EEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRL 188



 Score = 35.5 bits (78), Expect = 0.033
 Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
 Frame = +3

Query: 114 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELA 236
           TGSGKTLA++LP I  I   N+ PP  +    + ++++PTREL+
Sbjct: 63  TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELS 104


>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
           similarity to RNA helicase RH26 [Arabidopsis thaliana]
           GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH26
           GI:3776024
          Length = 850

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 32/73 (43%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
 Frame = +2

Query: 296 VFGGAP-KREQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDM 463
           V GG     EQ R      +I++ATPGRL D +E  +   T L     LVLDEAD +LDM
Sbjct: 493 VIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDM 552

Query: 464 GFEPQIRKIIEQI 502
           GF   I +II  +
Sbjct: 553 GFRRDIERIIAAV 565



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
 Frame = +3

Query: 24  KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGP- 200
           KD G +       + L      K+   + +TG+GKT+A++LPAI  +   PP  R     
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQP 457

Query: 201 --IALVLAPTRELA 236
             I LV+ PTRELA
Sbjct: 458 PIIVLVVCPTRELA 471


>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
           RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 798

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
 Frame = +2

Query: 290 TCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLD 460
           T + G   K +Q R      +I+IATPGRL+D +E     T+ L      ++DEAD +LD
Sbjct: 439 TLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLD 498

Query: 461 MGFEPQIRKIIE 496
           +GF   + KII+
Sbjct: 499 LGFRRDVEKIID 510



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
 Frame = +3

Query: 30  NGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 197
           +G+ +      + L++    K+   + +TG+GK++A++LPAI  +    N+   + +   
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAP 405

Query: 198 PIALVLAPTRELA 236
             AL+L PTRELA
Sbjct: 406 IFALILCPTRELA 418


>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles:  PF00271 helicase conserved
           C-terminal domain, PF01535 PPR repeat, PF00270:
           DEAD/DEAH box helicase
          Length = 1145

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +2

Query: 302 GGAPKREQARDLERGVE-IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQ 478
           GGA +  Q   L++    IV+ TPGR+ +  + G  +   C +LVLDE D +L   F   
Sbjct: 228 GGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFRED 287

Query: 479 IRKIIEQI 502
           I +I+E +
Sbjct: 288 IHRILEHV 295



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 105 RTQTGSGKTLAYILPAIVHI 164
           ++ TGSGKTLAY+LP +  I
Sbjct: 153 QSYTGSGKTLAYLLPILSEI 172


>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
           RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 845

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
 Frame = +2

Query: 290 TCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEADRMLD 460
           T + G   + +Q R      +I+IATPGRL+D +E     T+ L      ++DEAD +LD
Sbjct: 486 TLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLD 545

Query: 461 MGFEPQIRKIIE 496
           +GF+  + KII+
Sbjct: 546 LGFKRDVEKIID 557



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
 Frame = +3

Query: 30  NGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHI----NNQPPIRRGDG 197
           +G+ +      + L++    K+   + +TG+GK++A++LPAI  +    N+   + +   
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAP 452

Query: 198 PIALVLAPTRELA 236
              L+L PTRELA
Sbjct: 453 IFVLILCPTRELA 465


>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
           to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
           melanogaster and is a member of PF|00270 DEAD/DEAH box
           helicase family
          Length = 491

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
 Frame = +2

Query: 281 VRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTN---LQRCTYLVLDEADR 451
           +R + + GG     Q   L     IVI TPGR+   LE          R  +LVLDEADR
Sbjct: 155 LRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADR 214

Query: 452 MLDMGFEPQIRKIIE 496
           +LD+GF+ ++R I +
Sbjct: 215 VLDVGFQDELRTIFQ 229



 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 26/72 (36%), Positives = 38/72 (52%)
 Frame = +3

Query: 21  CKDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGP 200
           CK+ G+++     +  +      ++     QTGSGKT A+ LP I+H   + P     G 
Sbjct: 73  CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILHRLAEDPY----GV 127

Query: 201 IALVLAPTRELA 236
            ALV+ PTRELA
Sbjct: 128 FALVVTPTRELA 139



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +1

Query: 25  KTMGYKEPTPIQAQGWPIAMSGKNLVGV 108
           K +G ++PTP+Q    P  ++G++++G+
Sbjct: 74  KELGMRKPTPVQTHCVPKILAGRDVLGL 101


>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
           Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 781

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
 Frame = +2

Query: 284 RNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML-D 460
           R+  V GG  +R Q  +LE+GV+++IATPGR    + +G   L      +LDE D +  D
Sbjct: 482 RSMVVTGGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGD 541

Query: 461 MGFEPQIRKII 493
             FE  ++ +I
Sbjct: 542 DEFEAALQNLI 552



 Score = 35.5 bits (78), Expect = 0.033
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELA 236
           Q+GSGKTLAY++P I  +     Q   +   G P  +VL PT ELA
Sbjct: 419 QSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELA 464


>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
           to D-E-A-D box protein [Drosophila melanogaster]
           GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 512

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
 Frame = +2

Query: 326 ARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQ 499
           +++LE  V+I++ATPGRL+D +   KG T L+   YLV+DE DR+L   ++  +  +++ 
Sbjct: 159 SQNLESAVDILVATPGRLMDHINNTKGFT-LEHLRYLVVDETDRLLREAYQSWLPTVLQL 217

Query: 500 IRPTD 514
            + +D
Sbjct: 218 TQTSD 222



 Score = 34.3 bits (75), Expect = 0.076
 Identities = 22/41 (53%), Positives = 27/41 (65%)
 Frame = +3

Query: 114 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
           TGSGKTL+Y LP IV +    P+R      ALV+ PTR+LA
Sbjct: 71  TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLA 107


>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 
          Length = 739

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
 Frame = +2

Query: 194 WSDCFGLGAYQRVSTTNSASSADFGHTSYVRNTCVF------GGAPKREQARDLERGVEI 355
           WS   G+G    +S T   ++  FG  + V     F      GG    +  ++    + I
Sbjct: 138 WSPEDGVGCII-ISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNI 196

Query: 356 VIATPGRLIDFLEKGTTNLQ--RCTYLVLDEADRMLDMGFEPQIRKIIEQI 502
           ++  PGRL+  +++ T N +  +   L+LDEADR+LD  F+ Q+  II Q+
Sbjct: 197 LVCAPGRLLQHMDE-TPNFECPQLQILILDEADRVLDSAFKGQLDPIISQL 246



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 20/64 (31%), Positives = 38/64 (59%)
 Frame = +3

Query: 45  TDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 224
           TD  S++ +  +   ++     +TGSGKTLA+++P +  ++ +      DG   ++++PT
Sbjct: 95  TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPT 152

Query: 225 RELA 236
           RELA
Sbjct: 153 RELA 156



 Score = 32.3 bits (70), Expect = 0.31
 Identities = 19/57 (33%), Positives = 34/57 (59%)
 Frame = +1

Query: 508 NRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKKKIN 678
           +RQTL++SAT  K+VK LA   L D   I++ +  ++A    L   + +  ++KK++
Sbjct: 249 HRQTLLFSATQTKKVKDLARLSLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLD 305


>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
           identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
          Length = 626

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +3

Query: 33  GLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIAL 209
           G+++      S +      K+   R +TGSGKTLAY+LP +  + +   + ++   P A 
Sbjct: 65  GIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAF 124

Query: 210 VLAPTREL 233
           +L P+REL
Sbjct: 125 ILVPSREL 132



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +2

Query: 350 EIVIATPGRLIDFLEKG----TTNLQRCTYLVLDEADRMLDMGFEPQIRKI 490
           EI+++TP  +      G    T   +  + LVLDEAD +L  G+E  +R +
Sbjct: 174 EILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRSV 224


>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
           similar to RNA helicase GI:3776015 from [Arabidopsis
           thaliana]; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00270: DEAD/DEAH box
           helicase; matches EST OAO811-2
          Length = 581

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
 Frame = +2

Query: 338 ERGVEIVIATPGRLIDFLE-KGTTNLQ--RCT-YLVLDEADRMLDMGFEPQIRKIIEQIR 505
           +R  +I+++TP  L++ +E K    L+  RC  Y+V DEAD +L   F+ QI ++I  +R
Sbjct: 207 DRLPDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINMLR 266



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 24  KDNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINN 170
           +D+G  R     +  +      K+     +TGSGKT  Y+ P I  + N
Sbjct: 96  RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144


>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
           to RNA helicase involved in rRNA processing GB:6321267
           from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
           box domain
          Length = 541

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 114 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
           TGSGKT A+I P ++ +         DG  A++L+P RELA
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELA 223



 Score = 34.3 bits (75), Expect = 0.076
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +1

Query: 10  VQQGVKTMGYKEPTPIQAQGWPIAMSGK 93
           + + +  +G+KEPTPIQ Q  PI +SG+
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGR 179



 Score = 34.3 bits (75), Expect = 0.076
 Identities = 15/49 (30%), Positives = 30/49 (61%)
 Frame = +2

Query: 350 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 496
           +++I+TP RL   ++    +L +  YLVLDE+D++ +     QI  +++
Sbjct: 260 DVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVK 308


>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
          Length = 427

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +2

Query: 353 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 460
           IV+ TPGR++    +   +L+   + +LDE D+ML+
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE 204



 Score = 30.7 bits (66), Expect = 0.94
 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +1

Query: 502 TPN-RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKK 669
           TP+ +Q +M+SAT  KE++ + + ++ D ++I +        H ++Q  I +  M+K
Sbjct: 219 TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEK 275



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = +3

Query: 27  DNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 203
           D+G +         +  + +  +   + ++G GKT  ++L  +  I   P      G + 
Sbjct: 63  DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116

Query: 204 ALVLAPTRELAXXXXXXXXXXDTHL 278
           ALVL  TRELA           T+L
Sbjct: 117 ALVLCHTRELAYQICNEFVRFSTYL 141


>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
           DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
           EMBL:ATH010466
          Length = 344

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +2

Query: 353 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 460
           IV+ TPGR++    +   +L+   + +LDE D+ML+
Sbjct: 86  IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE 121



 Score = 30.7 bits (66), Expect = 0.94
 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +1

Query: 502 TPN-RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKK 669
           TP+ +Q +M+SAT  KE++ + + ++ D ++I +        H ++Q  I +  M+K
Sbjct: 136 TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEK 192


>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
           DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
           EMBL:ATH010466
          Length = 427

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +2

Query: 353 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD 460
           IV+ TPGR++    +   +L+   + +LDE D+ML+
Sbjct: 169 IVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE 204



 Score = 30.7 bits (66), Expect = 0.94
 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +1

Query: 502 TPN-RQTLMWSATWPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQL*IFVKNMKK 669
           TP+ +Q +M+SAT  KE++ + + ++ D ++I +        H ++Q  I +  M+K
Sbjct: 219 TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEK 275



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = +3

Query: 27  DNGLQRTDAYSSSRLADSYVWKEFSWRTQTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 203
           D+G +         +  + +  +   + ++G GKT  ++L  +  I   P      G + 
Sbjct: 63  DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116

Query: 204 ALVLAPTRELAXXXXXXXXXXDTHL 278
           ALVL  TRELA           T+L
Sbjct: 117 ALVLCHTRELAYQICNEFVRFSTYL 141


>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
           helicase, Mus musculus, PIR:I49731
          Length = 496

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +2

Query: 305 GAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDM-GFEPQI 481
           GAP   +   +     +VI TPG L  ++      L     LV DEAD ML   GF    
Sbjct: 203 GAPAATRGAPVS--AHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDS 260

Query: 482 RKIIEQI 502
            KI++ I
Sbjct: 261 LKIMKDI 267



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +3

Query: 105 RTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 236
           +   GSGKT  ++L  +  ++  P +R    P AL + PTRELA
Sbjct: 137 QAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELA 175


>At2g28600.1 68415.m03476 expressed protein 
          Length = 502

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 305 GAPKREQARDLER-GVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 481
           GAP   Q   L+    E ++ATP RL++ +     ++   + LV+DE   +   G+   +
Sbjct: 232 GAPLDHQISGLKSVEPEFIVATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAV 291

Query: 482 RKIIEQI 502
           + I + I
Sbjct: 292 KSIKQAI 298


>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
           EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
           sapiens, SWISSPROT:IF42_HUMAN
          Length = 472

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 19/41 (46%), Positives = 23/41 (56%)
 Frame = +3

Query: 111 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 233
           QTGSGKTL Y+L     IN Q          A+++ PTREL
Sbjct: 121 QTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTREL 156


>At4g03070.1 68417.m00415 2-oxoglutarate-dependent dioxygenase
           (AOP1.2) identical to GI:16118887; contains PF03171:
           2OG-Fe(II) oxygenase superfamily domain
          Length = 322

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 531 SYLAQRSEETC*GLLGRLHSDQYRIITTFRKSQHSS 638
           S L    +  C  L GRLHS  +R+I T +K+++S+
Sbjct: 230 SVLVMVGDSLCALLNGRLHSPYHRVIMTGKKTRYST 265


>At1g11920.1 68414.m01376 pectate lyase family protein similar to
           pectate lyase GI:14289169 from [Salix gilgiana]
          Length = 384

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 60  SSRLADSYVWKEFSWRTQTGSGKTLAYILPA 152
           + R+   Y WK + WRT     K  AY +P+
Sbjct: 313 TKRIDSGYDWKRWKWRTSKDVFKNGAYFVPS 343


>At4g35470.1 68417.m05041 leucine-rich repeat family protein similar
           to Leucine-rich repeat protein SHOC-2 (Ras-binding
           protein Sur-8) (SP:Q9UQ13 ){Homo sapiens},PIR:T12704;
           contains Pfam PF00560: Leucine Rich Repeat domains
          Length = 549

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -3

Query: 513 SVGRICSMIFLICGSNPISNIRSASSR 433
           S+G + ++++L  GSN +S++ SA SR
Sbjct: 287 SIGELLNLVYLNLGSNQLSSLPSAFSR 313


>At3g04670.1 68416.m00500 WRKY family transcription factor similar
           to elicitor response element binding protein WRKY3
           isolog GB:AAB63078 [Arabidopsis thaliana]
          Length = 330

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 244 ICCANSLVGAKTKAIGPSPLRI 179
           ICC N L G  T+ + P PL++
Sbjct: 79  ICCGNDLSGDYTQVLAPEPLQM 100


>At5g22180.1 68418.m02582 hypothetical protein
          Length = 169

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 571 YLGDYIQINIGSLQLSANHNILQL*IFVKNMKKKI 675
           Y GD +   +GSL  + N  + +L + +  MKK++
Sbjct: 94  YNGDDVYAKLGSLNAAGNQRVFELDLKLSTMKKQL 128


>At5g48950.2 68418.m06055 thioesterase family protein contains Pfam
           profile PF03061: thioesterase family protein
          Length = 127

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +2

Query: 110 SNGFRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSAS 253
           ++GF++  G+HL+ H  H +P A  E  +++ F +   + + T +  S
Sbjct: 66  ASGFKRVAGIHLSIH--HLRPAALGEIVFAESFPVSVGKNIQTEDLKS 111


>At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 510

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 371 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 481
           GR++DF+   T   + C     DEA R+L+M  E Q+
Sbjct: 308 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 344


>At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 427

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 371 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 481
           GR++DF+   T   + C     DEA R+L+M  E Q+
Sbjct: 374 GRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 410


>At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein low
           similarity to mannosidase [gi:5359712] from Cellulomonas
           fimi
          Length = 944

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 64  QGWPIAMSGKNLVGVLKRVPAKRW 135
           +GW I +  K L G +K VP + W
Sbjct: 568 EGWTIPLFKKGLDGFIKEVPNRMW 591


>At1g01800.1 68414.m00099 short-chain dehydrogenase/reductase (SDR)
           family protein similar to carbonyl reductase GI:1049108
           from [Mus musculus]
          Length = 295

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +1

Query: 37  YKEPTPIQAQGWPIAMSG----KNLVGVLKRVPAKR 132
           YKE   +Q +GWP  MSG    K  V  L RV AKR
Sbjct: 203 YKEGA-LQVKGWPTVMSGYILSKAAVIALTRVLAKR 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,118,391
Number of Sequences: 28952
Number of extensions: 358236
Number of successful extensions: 1150
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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