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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060084.seq
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   132   2e-31
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   132   2e-31
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   131   2e-31
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    27   5.2  
At1g53180.1 68414.m06027 expressed protein                             27   6.9  
At1g19510.1 68414.m02430 myb family transcription factor contain...    27   9.1  

>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  132 bits (318), Expect = 2e-31
 Identities = 59/80 (73%), Positives = 66/80 (82%)
 Frame = +2

Query: 29  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 209 SSEALEAGRICCNKYP*RTA 268
           SSEALEA RI CNKY  ++A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80



 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 43/54 (79%), Positives = 49/54 (90%)
 Frame = +1

Query: 256 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPXGTVARVS 417
           VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV+
Sbjct: 77  VKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVA 130


>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  132 bits (318), Expect = 2e-31
 Identities = 59/80 (73%), Positives = 66/80 (82%)
 Frame = +2

Query: 29  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 209 SSEALEAGRICCNKYP*RTA 268
           SSEALEA RI CNKY  ++A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80



 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 43/54 (79%), Positives = 49/54 (90%)
 Frame = +1

Query: 256 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPXGTVARVS 417
           VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV+
Sbjct: 77  VKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVA 130


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  131 bits (317), Expect = 2e-31
 Identities = 59/80 (73%), Positives = 66/80 (82%)
 Frame = +2

Query: 29  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60

Query: 209 SSEALEAGRICCNKYP*RTA 268
           SSEALEA RI CNKY  ++A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80



 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 43/54 (79%), Positives = 49/54 (90%)
 Frame = +1

Query: 256 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPXGTVARVS 417
           VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT ARV+
Sbjct: 77  VKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVA 130


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
           domain-containing protein / RNA recognition motif
           (RRM)-containing protein KIAA0122 gene , Homo sapiens,
           EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF01585: G-patch domain, weak hit to PF00641: Zn-finger
           in Ran binding protein and others
          Length = 1105

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 137 PNRRYG-SWDQVHPDRTSISDTVYFCSTGSISLAGAP 30
           PN R+G S+D  +PD   + D VY    G  +L   P
Sbjct: 53  PNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLP 89


>At1g53180.1 68414.m06027 expressed protein
          Length = 358

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 38  RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 142
           R +R  RYC + PYP S      P+ K+   D+GK
Sbjct: 27  RRSRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60


>At1g19510.1 68414.m02430 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 100

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 104 VPDPKIRIFDLGKKRATVDDFPL 172
           VP PK +  D+G K   +DDF L
Sbjct: 69  VPLPKYKTVDVGSKSRGIDDFDL 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,263,330
Number of Sequences: 28952
Number of extensions: 242077
Number of successful extensions: 723
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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