Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060083.seq
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family...   124   5e-29
At3g05760.1 68416.m00647 expressed protein                             30   1.2  
At5g61190.1 68418.m07676 zinc finger protein-related contains Pf...    30   1.6  
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ...    29   2.1  
At2g19385.1 68415.m02261 expressed protein weak similarity to Ce...    29   2.8  
At5g38610.1 68418.m04670 invertase/pectin methylesterase inhibit...    28   4.9  

>At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family
           protein similar to SWISS-PROT:Q15428
          Length = 277

 Score =  124 bits (299), Expect = 5e-29
 Identities = 64/138 (46%), Positives = 78/138 (56%)
 Frame = +3

Query: 255 YFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQXXXXXXXXXXXXXXXXXXXPEKPRI 434
           YFM+NHLGSYECKLCLTLHNNEG+YLAHTQGK+HQ                   P K  +
Sbjct: 43  YFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPTKPQPLKRNV 102

Query: 435 EPKKFVKIGRPGYRVTKQXDPETGHRACSSK*IIQRLQRVLYLDIDLCLLMXRRLSLQTA 614
             ++ VKIGRPGYRVTKQ DPE   R+   +     ++  +           +++     
Sbjct: 103 SVRRTVKIGRPGYRVTKQYDPELQQRSLLFQIEYPEIEDNIKPRHRFMSSYEQKVQPYDK 162

Query: 615 DGQYXLFAAEPYETIALK 668
             QY LFAAEPYE IA K
Sbjct: 163 SYQYLLFAAEPYEIIAFK 180



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 26/56 (46%), Positives = 37/56 (66%)
 Frame = +2

Query: 509 QSLLFQVDYPEIAEGVIPRHRFMSAYXQKIEPPDRRWAVFXICSRAL*NYCFKVPS 676
           +SLLFQ++YPEI + + PRHRFMS+Y QK++P D+ +      +       FKVPS
Sbjct: 128 RSLLFQIEYPEIEDNIKPRHRFMSSYEQKVQPYDKSYQYLLFAAEPYEIIAFKVPS 183



 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 25/37 (67%), Positives = 26/37 (70%)
 Frame = +1

Query: 145 GGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDP 255
           G K G GG AS      DRRERLR+LALETIDL KDP
Sbjct: 6   GSKPGSGGAASGQNEAIDRRERLRRLALETIDLAKDP 42


>At3g05760.1 68416.m00647 expressed protein
          Length = 202

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 282 YECKLCLTLHNNEGSYLAHTQGKKHQ 359
           Y C++C  +  +  +YL H  GKKHQ
Sbjct: 83  YFCRVCDCVVKDSANYLDHINGKKHQ 108


>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
           profile PF04396: Protein of unknown function DUF537,
           weak hit to PF00096: Zinc finger C2H2 type
          Length = 977

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 288 CKLCLTLHNNEGSYLAHTQGKKHQ 359
           CK+C     N  +Y  HT GKKH+
Sbjct: 299 CKVCQISFTNNDTYKNHTYGKKHR 322



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 288 CKLCLTLHNNEGSYLAHTQGKKHQ 359
           C++C    N++ ++ +HT GKKH+
Sbjct: 684 CQVCQISCNSKVAFASHTYGKKHR 707


>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM); contains Pfam profile PF00096:
           Zinc finger, C2H2 type
          Length = 613

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 288 CKLCLTLHNNEGSYLAHTQGKKHQ 359
           C LC      E  Y AH  GKKHQ
Sbjct: 87  CSLCNATMTCEQDYFAHVYGKKHQ 110


>At2g19385.1 68415.m02261 expressed protein weak similarity to Cell
           growth regulating nucleolar protein (Swiss-Prot:Q08288)
           [Mus musculus]
          Length = 275

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 288 CKLCLTLHNNEGSYLAHTQGKKHQ 359
           C LC T   ++ + LAH  GKKH+
Sbjct: 97  CSLCNTKATSQQTLLAHADGKKHR 120


>At5g38610.1 68418.m04670 invertase/pectin methylesterase inhibitor
           family protein low similarity to pistil-specific gene
           sts15 [Solanum tuberosum] GI:1616628; contains Pfam
           profile PF04043: Plant invertase/pectin methylesterase
           inhibitor
          Length = 199

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 130 FQNRPGGKTGGGGVASWSESNRDRRERL 213
           F+ R  G  GGGGV +W+    D   +L
Sbjct: 149 FRERDDGDGGGGGVTTWTSPIGDENHKL 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,458,810
Number of Sequences: 28952
Number of extensions: 225364
Number of successful extensions: 483
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)