Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060081.seq
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32840.1 68417.m04670 phosphofructokinase family protein simi...    31   0.73 
At2g22480.1 68415.m02667 phosphofructokinase family protein simi...    30   1.3  
At4g29220.1 68417.m04180 phosphofructokinase family protein simi...    27   6.8  
At1g73880.1 68414.m08556 UDP-glucoronosyl/UDP-glucosyl transfera...    27   6.8  
At1g30530.1 68414.m03735 UDP-glucoronosyl/UDP-glucosyl transfera...    27   6.8  
At5g56630.1 68418.m07070 phosphofructokinase family protein simi...    27   9.0  
At4g35560.1 68417.m05053 expressed protein                             27   9.0  
At1g23780.1 68414.m03000 F-box family protein contains Pfam PF00...    27   9.0  

>At4g32840.1 68417.m04670 phosphofructokinase family protein similar
           to phosphofructokinase [Amycolatopsis methanolica]
           GI:17432243; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 462

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 103 NKITKDQREKYKFLHIAGMVGSIDNDFCGTDMTIGTDSALHRIIEAIDA 249
           N I K+ R +   + +AG+  +IDND    D + G D+A+     AI+A
Sbjct: 198 NAIYKEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINA 246



 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 285 IMEVMGRNCGYXALVAALASEAYQ-VFIPEDP 377
           I+++MGR  G+ A+ A LAS       IPE P
Sbjct: 260 IVKLMGRYSGFIAMYATLASRDVDCCLIPESP 291


>At2g22480.1 68415.m02667 phosphofructokinase family protein similar
           to phosphofructokinase [Amycolatopsis methanolica]
           GI:17432243; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 537

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +3

Query: 285 IMEVMGRNCGYXALVAALASEAYQV-FIPEDP 377
           ++++MGRN G+ A+ A+LAS    +  IPE P
Sbjct: 348 VVKLMGRNSGFIAMQASLASGQVDICLIPEVP 379


>At4g29220.1 68417.m04180 phosphofructokinase family protein similar
           to phosphofructokinase [Amycolatopsis methanolica]
           GI:17432243; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 473

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 109 ITKDQREKYKFLHIAGMVGSIDNDFCGTDMTIGTDSALHRIIEAIDA 249
           I ++ R++   + +AG+  +IDND    D + G D+A+     AI+A
Sbjct: 200 IFEEIRKRKLKVAVAGIPKTIDNDIPIIDRSFGFDTAVEEAQRAINA 246


>At1g73880.1 68414.m08556 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 473

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 7   WIPRAAGIRHELTGANLFRQEWSSLLDELL 96
           W P+ A +RH   GA L    W+S+++ ++
Sbjct: 347 WAPQVAVLRHRAVGAFLTHCGWNSVVEAVV 376


>At1g30530.1 68414.m03735 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 453

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 7   WIPRAAGIRHELTGANLFRQEWSSLLDEL 93
           W P+   ++HE  G N+    W+S+L+ +
Sbjct: 332 WAPQVELLKHEAMGVNVTHCGWNSVLESV 360


>At5g56630.1 68418.m07070 phosphofructokinase family protein similar
           to phosphofructokinase [Amycolatopsis methanolica]
           GI:17432243; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 485

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 288 MEVMGRNCGYXALVAALASEAYQ-VFIPEDP 377
           +++MGR  GY A+ A LAS       IPE P
Sbjct: 260 VKLMGRYSGYIAMYATLASRDVDCCLIPESP 290


>At4g35560.1 68417.m05053 expressed protein 
          Length = 917

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/49 (20%), Positives = 23/49 (46%)
 Frame = +1

Query: 127 EKYKFLHIAGMVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVALLIHI 273
           +  K++ + G +  I        + IG+D     ++E IDA+  + + +
Sbjct: 406 QSVKYIKLTGSITCIQKSQNSKHLAIGSDQGHDSLVEVIDALTPVYLQV 454


>At1g23780.1 68414.m03000 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SP:Q9Y3I1 F-box only
           protein 7 {Homo sapiens}; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 475

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 567 NTGNNGXTYCRVIKPPHXXPLGGDRITXAVXXHP 466
           +TG +G  + R+I  P      GDR+  ++  HP
Sbjct: 416 STGRSGIRFPRIIGDPPFTWFNGDRMHGSIGIHP 449


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,153,451
Number of Sequences: 28952
Number of extensions: 225224
Number of successful extensions: 595
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)