Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060079.seq
(691 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 45 5e-05
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 40 0.002
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 40 0.002
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 40 0.002
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 40 0.002
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 37 0.011
At3g06360.1 68416.m00734 arabinogalactan-protein (AGP27) 32 0.41
At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identic... 30 1.7
At5g49390.1 68418.m06112 hypothetical protein 29 2.2
At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family... 29 2.2
At3g24550.1 68416.m03083 protein kinase family protein contains ... 29 3.8
At1g30040.1 68414.m03673 gibberellin 2-oxidase / GA2-oxidase (GA... 28 5.1
At5g55020.1 68418.m06853 myb family transcription factor (MYB120... 28 6.7
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 28 6.7
At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative si... 28 6.7
At2g28440.1 68415.m03455 proline-rich family protein contains pr... 28 6.7
At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protei... 28 6.7
At1g73080.1 68414.m08450 leucine-rich repeat transmembrane prote... 27 8.9
At1g73070.1 68414.m08449 leucine-rich repeat family protein cont... 27 8.9
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +2
Query: 140 DQKXWVPVTKLGRLXREGKIDKLESI*NTSHS*PLLDY 253
+++ WVPVTKLGRL +EGKI K+E I HS P+ +Y
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQI--YLHSLPVKEY 76
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 140 DQKXWVPVTKLGRLXREGKIDKLESI*NTSHS*PLLDY 253
++ WVPVTKLGRL + KI KLE I HS P+ +Y
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQI--YLHSLPVKEY 84
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 140 DQKXWVPVTKLGRLXREGKIDKLESI*NTSHS*PLLDY 253
++ WVPVTKLGRL + KI KLE I HS P+ +Y
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQI--YLHSLPVKEY 84
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 140 DQKXWVPVTKLGRLXREGKIDKLESI*NTSHS*PLLDY 253
++ WVPVTKLGRL + KI KLE I HS P+ +Y
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQI--YLHSLPVKEY 84
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/38 (52%), Positives = 25/38 (65%)
Frame = +2
Query: 140 DQKXWVPVTKLGRLXREGKIDKLESI*NTSHS*PLLDY 253
++ WVPVTKLGRL + KI KLE I HS P+ +Y
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQI--YLHSLPVKEY 84
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +2
Query: 140 DQKXWVPVTKLGRLXREGKIDKLESI*NTSHS*PLLDY 253
+++ WVPVTKLGRL G I ++E I HS P+ +Y
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQI--YLHSLPVKEY 85
>At3g06360.1 68416.m00734 arabinogalactan-protein (AGP27)
Length = 125
Score = 31.9 bits (69), Expect = 0.41
Identities = 23/60 (38%), Positives = 29/60 (48%)
Frame = +3
Query: 342 LPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAISPP 521
LPSPA+S+T T S+ P D +S +P P FAP PP SS A + P
Sbjct: 49 LPSPAVSSTQTIPSSSTLPEPENDD---VSADP-DP---AFAPSASPPASSLASLSSQAP 101
>At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identical
to gi|10880497|gb|AAG24278; supported by Ceres cDNA
265772
Length = 127
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +3
Query: 345 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAISPP 521
P+P S + + PR PT P +T P TP A + PP S PS+ SPP
Sbjct: 26 PAPTRSPLPSPAQPPRTAAPT-PSITPTP-TP-TPSATPTAAPVSPPAGSPLPSSASPP 81
>At5g49390.1 68418.m06112 hypothetical protein
Length = 422
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 348 SPAISATSTRSSNPRFHT-PTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAISP 518
+P ++A S+ SS P PD+T+ S +TP E A P +++ + ++I+P
Sbjct: 300 NPGVTAASSTSSTQMEEADPYNPDVTAASSTSITP--MEVAEPYNPDVTAASSTSITP 355
>At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family
protein identical to hydroxyproline-rich glycoprotein
[Arabidopsis thaliana] gi|9293881|dbj|BAB01784
Length = 532
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 331 YASSYPPLRSRLHQPDHQIPDSIHQPPQT 417
Y SS+P +RS H P + P + PP T
Sbjct: 441 YVSSFPFIRSPSHSPQYASPAAYPSPPTT 469
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = +3
Query: 345 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLT----PY*KEFAPGLKPPLSSEAPSAI 512
PSP + + + S P T TTP + S P T P PP SS P ++
Sbjct: 5 PSPGTTPSPSPPSPPTNSTTTTPPPAASSPPPTTTPSSPPPSPSTNSTSPPPSSPLPPSL 64
Query: 513 SPP 521
PP
Sbjct: 65 PPP 67
>At1g30040.1 68414.m03673 gibberellin 2-oxidase / GA2-oxidase
(GA2OX2) identical to GI:4678368 ga2ox2
Length = 341
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/84 (22%), Positives = 35/84 (41%)
Frame = +2
Query: 356 DLGYINPIIKSPIPYTNHPRLNIYFHQSPDAVLEGVRAGVKASVVIRGSISYLTPSSLGM 535
D+G+I ++ + P + P+ + F Q+P E V +K + + + LG+
Sbjct: 106 DVGWIEYLLLNANPQLSSPKTSAVFRQTPQIFRESVEEYMKEIKEVSYKVLEMVAEELGI 165
Query: 536 AKGVSLPYFQVNDESQASRLXSRH 607
+L + DE S L H
Sbjct: 166 EPRDTLSK-MLRDEKSDSCLRLNH 188
>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 523
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 348 SPAISATSTRSSNPRF-HTPTTPDLTSISINPLTPY*KEFAPGLKPP 485
+P+ S+ T +S+P F H+ TP TS NP+ +E P + P
Sbjct: 352 NPSSSSYPTSTSSPSFLHSHYTPSSTSFHTNPVYSMKQEQLPSNQIP 398
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +3
Query: 339 KLPSPAISATSTRSSNPRFHTPTT-PDLTSISINPLTPY*KE---FAPGLKPPLSSEAPS 506
K P+P + S + + TPT P TS P TP + P KPP S P
Sbjct: 108 KPPTPTVKPPSVQPPTYKPPTPTVKPPTTSPVKPPTTPPVQSPPVQPPTYKPPTSPVKPP 167
Query: 507 AISPP 521
+PP
Sbjct: 168 TTTPP 172
>At5g14220.1 68418.m01661 protoporphyrinogen oxidase, putative
similar to protoporphyrinogen IX oxidase, mitochondrial
(PPO II) from Nicotiana tabacum [SP|O24164], Glycine
max, AB025102, Spinacia oleracea [GI:14349153]; contains
Pfam amine oxidase, flavin-containing domain [PF015930]
Length = 508
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 286 GHPFIRSHYYWRSR-P-YASSYPPLRSRLHQPDHQIP 390
G P +HYYWR P Y SSY + + + ++ +P
Sbjct: 427 GEPVSVNHYYWRKAFPLYDSSYDSVMEAIDKMENDLP 463
>At2g28440.1 68415.m03455 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
Length = 268
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +3
Query: 348 SPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAIS 515
SP + + SS+P +P P + + +PL P A + P SS P +++
Sbjct: 86 SPEVDSPLAPSSSPEVDSPQPPSSSPEADSPLPPSSSPEANSPQSPASSPKPESLA 141
>At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protein
contains Pfam PF00641: Zn-finger in Ran binding protein
and others; contains Prosite PS00018: EF-hand
calcium-binding domain; similar to Zinc finger protein
265 (Zinc finger, splicing) (Fragment). (SP:Q9R020){Mus
musculus}
Length = 849
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/60 (30%), Positives = 23/60 (38%)
Frame = -1
Query: 412 GVVGVWNRGFDDRVDVAEIAGEGSLMHKGETANSNASG*RGGQHIDSFNCDVRVVQQRST 233
G +G GFDD D G GS +G G G +H S D V R++
Sbjct: 784 GRMGSRRGGFDDEFDRKSSRGRGSGSFRGSNRGGRGGGGGGNRHGHSDGKDTDVGDFRNS 843
>At1g73080.1 68414.m08450 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor protein kinase
GI:1389566 from [Arabidopsis thaliana]
Length = 1123
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 467 AGVKASVVIRGSISYLTPSSLGMAKGVSL 553
+ + A V++ G++S PSSLGM K +++
Sbjct: 291 SSLDALVIVSGNLSGTIPSSLGMLKNLTI 319
>At1g73070.1 68414.m08449 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to receptor-like
protein kinase INRPK1 [Ipomoea nil]
gi|14495542|gb|AAB36558
Length = 598
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 467 AGVKASVVIRGSISYLTPSSLGMAKGVSL 553
+ + A V++ G++S PSSLGM K +++
Sbjct: 289 SSLDALVIVSGNLSGTIPSSLGMLKNLTI 317
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,565,031
Number of Sequences: 28952
Number of extensions: 262295
Number of successful extensions: 885
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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