Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060072.seq
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fat... 56 2e-08
At4g16800.1 68417.m02537 enoyl-CoA hydratase, putative similar t... 52 4e-07
At5g43280.1 68418.m05290 enoyl-CoA hydratase/isomerase family pr... 52 5e-07
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP... 51 8e-07
At4g16210.1 68417.m02460 enoyl-CoA hydratase/isomerase family pr... 37 0.014
At2g30650.1 68415.m03738 3-hydroxyisobutyryl-coenzyme A hydrolas... 33 0.18
At4g28350.1 68417.m04058 lectin protein kinase family protein co... 32 0.41
At3g60510.1 68416.m06768 enoyl-CoA hydratase/isomerase family pr... 31 0.71
At3g14840.2 68416.m01875 leucine-rich repeat family protein / pr... 31 0.71
At2g05250.1 68415.m00553 DNAJ heat shock N-terminal domain-conta... 30 1.2
At2g05230.1 68415.m00551 DNAJ heat shock N-terminal domain-conta... 30 1.2
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 30 1.6
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 30 1.6
At4g00960.1 68417.m00130 protein kinase family protein contains ... 29 2.9
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 29 2.9
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 3.8
At1g10050.1 68414.m01133 glycosyl hydrolase family 10 protein / ... 29 3.8
At4g13360.1 68417.m02089 enoyl-CoA hydratase/isomerase family pr... 28 5.0
At4g04960.1 68417.m00721 lectin protein kinase, putative similar... 28 5.0
At3g24360.1 68416.m03058 enoyl-CoA hydratase/isomerase family pr... 28 5.0
At2g41750.1 68415.m05161 DTW domain-containing protein contains ... 28 5.0
At2g19930.1 68415.m02329 RNA-dependent RNA polymerase family pro... 28 5.0
At1g15530.1 68414.m01868 receptor lectin kinase, putative simila... 28 5.0
At1g59890.1 68414.m06747 paired amphipathic helix repeat-contain... 28 6.6
At5g50640.1 68418.m06274 CBS domain-containing protein / octicos... 27 8.8
At5g50530.1 68418.m06258 CBS domain-containing protein / octicos... 27 8.8
At3g42120.1 68416.m04325 hypothetical protein 27 8.8
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 27 8.8
At3g02200.2 68416.m00199 proteasome family protein contains Pfam... 27 8.8
>At4g29010.1 68417.m04147 abnormal inflorescence meristem 1 / fatty
acid multifunctional protein (AIM1) identical to
gi:4337025; contains Pfam profiles PF02737
(3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
PF00378 (enoyl-CoA hydratase/isomerase family protein),
PF00725 (3-hydroxyacyl-CoA dehydrogenase)
Length = 721
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +1
Query: 256 AVIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRI-EQSRKPYIAAIQGSCL 432
A+++ G G F G DI++ + ++ + + E+ + E SRKP +AA++G L
Sbjct: 52 AIVLIGNNGRFSGGFDINVFQQVHKTGDLSLMPEVSVELVCNLMEDSRKPVVAAVEGLAL 111
Query: 433 GGGLETALACKYRIAVKDSKTG 498
GGGLE A+AC R+A ++ G
Sbjct: 112 GGGLELAMACHARVAAPKAQLG 133
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = +3
Query: 510 EVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLG 641
E+ LG++PG GGTQRLP L + D+ L K++ +++ KLG
Sbjct: 136 ELTLGVIPGFGGTQRLPRLVGLAKATDMILLSKSISSEEGHKLG 179
>At4g16800.1 68417.m02537 enoyl-CoA hydratase, putative similar to
AU-binding protein/Enoyl-CoA hydratase [Homo sapiens]
GI:780241, [Mus musculus]GI:6840920; contains Pfam
profile PF00378 enoyl-CoA hydratase/isomerase family
protein
Length = 229
Score = 52.0 bits (119), Expect = 4e-07
Identities = 35/90 (38%), Positives = 46/90 (51%)
Frame = +1
Query: 277 PGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLGGGLETAL 456
PG F AGAD+ + EV + +F IE P IAAI+G+ LGGGLE AL
Sbjct: 28 PGVFCAGADLKE-RRTMSPSEVHTYVNSLRYMFSFIEALSIPTIAAIEGAALGGGLEMAL 86
Query: 457 ACKYRIAVKDSKTGFGLQKSCWDFCPAVEG 546
AC RI +++ FGL ++ P G
Sbjct: 87 ACDLRICGENAV--FGLPETGLAIIPGAGG 114
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 510 EVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLG 641
E L ++PG GGTQRL L + +L TG+ + A +A G
Sbjct: 103 ETGLAIIPGAGGTQRLSRLVGRSVSKELIFTGRKIDAIEAANKG 146
>At5g43280.1 68418.m05290 enoyl-CoA hydratase/isomerase family
protein similar to Delta 3,5-delta2,4-dienoyl-CoA
isomerase, mitochondrial (ECH1) from Rattus norvegicus
[SP|Q62651], from Homo sapiens [SP|Q13011]; contains
Pfam profile PF00378 enoyl-CoA hydratase/isomerase
family protein
Length = 278
Score = 51.6 bits (118), Expect = 5e-07
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Frame = +1
Query: 253 SAVIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRR-----------IEQSRK 399
S +I+SG F +G D++ + + T+ + R E RR IEQ RK
Sbjct: 56 SVIILSGAGKHFCSGIDLNSLSSISTQSSSGNDRGRSSEQLRRKIKSMQAAITAIEQCRK 115
Query: 400 PYIAAIQGSCLGGGLETALACKYRIAVKDS 489
P IAAI G+C+GGG++ AC R +D+
Sbjct: 116 PVIAAIHGACIGGGVDLITACDIRYCSEDA 145
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 510 EVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLG 641
EV L ++ G QRLP++ ++LALT + +AK LG
Sbjct: 151 EVDLAIVADLGTLQRLPSIVGYANAMELALTARRFSGSEAKDLG 194
>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
identical to fatty acid multifunctional protein (AtMFP2)
GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
acid beta-oxidation); contains Pfam profiles PF02737
(3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
PF00378 (enoyl-CoA hydratase/isomerase family protein),
PF00725 (3-hydroxyacyl-CoA dehydrogenase)
Length = 725
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = +3
Query: 510 EVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLGNCRSVSFPS 668
E+ LG++PG GGTQRLP L + L++ LT K VKA++ LG +V P+
Sbjct: 139 ELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPA 191
Score = 50.0 bits (114), Expect = 1e-06
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +1
Query: 256 AVIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHE----IFRRIEQSRKPYIAAIQG 423
A++I+G G F G DIS + V K G+ I +E +RKP +AAI G
Sbjct: 54 AIVITGAKGRFSGGFDISGFGEMQKGN--VKEPKAGYISIDIITDLLEAARKPSVAAIDG 111
Query: 424 SCLGGGLETALACKYRIAVKDSKTG 498
LGGGLE A+AC RI+ ++ G
Sbjct: 112 LALGGGLELAMACHARISAPAAQLG 136
>At4g16210.1 68417.m02460 enoyl-CoA hydratase/isomerase family
protein similar to 3-hydroxybutyryl-CoA dehydratase
(Crotonase) from Clostridium acetobutylicum [SP|P52046],
FadB1x (enoyl-CoA hydratase) from Pseudomonas putida
[GI:13310130]; contains Pfam profile PF00378 enoyl-CoA
hydratase/isomerase family protein
Length = 265
Score = 36.7 bits (81), Expect = 0.014
Identities = 25/78 (32%), Positives = 39/78 (50%)
Frame = +1
Query: 259 VIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLGG 438
VI +G F +G D++ E+ K +V + ++E+ RKP I AI G +
Sbjct: 57 VIFTGSGRSFCSGVDLTAAESV-FKGDVKDPET---DPVVQMERLRKPIIGAINGFAITA 112
Query: 439 GLETALACKYRIAVKDSK 492
G E ALAC +A + +K
Sbjct: 113 GFELALACDILVASRGAK 130
>At2g30650.1 68415.m03738 3-hydroxyisobutyryl-coenzyme A hydrolase,
putative / CoA-thioester hydrolase, putative strong
similarity to gi:8572760; contains Pfam profile PF00388
enoyl-CoA hydratase/isomerase family protein
Length = 422
Score = 33.1 bits (72), Expect = 0.18
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Frame = +1
Query: 259 VIISGKPGCFIAGADISMIENCKTKEEVVSLS---KRGHEIFRRIEQSRKPYIAAIQGSC 429
V++ G+ F AG DI I + +++ + K G+ + + RKP ++ + G
Sbjct: 97 VVLKGQGRAFSAGGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIV 156
Query: 430 LGGGLETALACKYRIAVKDSKTGFGLQKSCWDFCPAV 540
+GGG + ++RIA ++ T F + ++ P V
Sbjct: 157 MGGGAGLSTNGRFRIATEN--TVFAMPETALGLFPDV 191
>At4g28350.1 68417.m04058 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 649
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = -1
Query: 580 VGMEVRAGNLCVPPPPGKSPNMTSVVQIL 494
V M +R G LCV P P P M VVQIL
Sbjct: 559 VEMALRIGLLCVHPDPRVRPKMRQVVQIL 587
>At3g60510.1 68416.m06768 enoyl-CoA hydratase/isomerase family
protein similar to enoyl-CoA-hydratase, Avicennia
marina, EMBL:AF190450 [GI:6014701], CoA-thioester
hydrolase CHY1 from Arabidopsis thaliana [GI:8572760];
contains Pfam profile PF00378 enoyl-CoA
hydratase/isomerase family protein
Length = 401
Score = 31.1 bits (67), Expect = 0.71
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = +1
Query: 259 VIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIE---QSRKPYIAAIQGSC 429
V++ G F AG DI + + +T+ ++ + ++ I KP++A + G
Sbjct: 85 VMMKGSGRAFCAGGDIVSLYHLRTRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVT 144
Query: 430 LGGGLETALACKYRIAVKDSKTGFGLQKSCWDFCP 534
+GGG ++ +R+A +T F ++ F P
Sbjct: 145 MGGGTGVSIPGTFRVAT--DRTIFATPETIIGFHP 177
>At3g14840.2 68416.m01875 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain; contains 2 predicted transmembrane domains
Length = 988
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 574 MEVRAGNLCVPPPPGKSPNMTSVVQIL 494
M ++ G LC P PG P+M++VV +L
Sbjct: 885 MMIQIGMLCTSPAPGDRPSMSTVVSML 911
>At2g05250.1 68415.m00553 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 706
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 396 ETVYCRNTRQLSRRWIRDCSCM*ISH 473
+TVY R+TR+ S++WI C + SH
Sbjct: 643 KTVYHRSTREDSKKWIPRCEMLRFSH 668
>At2g05230.1 68415.m00551 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 706
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 396 ETVYCRNTRQLSRRWIRDCSCM*ISH 473
+TVY R+TR+ S++WI C + SH
Sbjct: 643 KTVYHRSTREDSKKWIPRCEMLRFSH 668
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12 (TRIP12)
{Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 134 NGVYVVTLDSPNVKVNSLNTQVMEEV--SNIVNEIETNSGIEVQSLYQASLDASLQG 298
N +Y + P+ +VN L+ S TNS +E QS + LD+ LQG
Sbjct: 1173 NDIYTIMYQRPDSQVNRLSVGGASSTTPSKSTKSATTNSSVESQSHRASLLDSILQG 1229
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12 (TRIP12)
{Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 134 NGVYVVTLDSPNVKVNSLNTQVMEEV--SNIVNEIETNSGIEVQSLYQASLDASLQG 298
N +Y + P+ +VN L+ S TNS +E QS + LD+ LQG
Sbjct: 1264 NDIYTIMYQRPDSQVNRLSVGGASSTTPSKSTKSATTNSSVESQSHRASLLDSILQG 1320
>At4g00960.1 68417.m00130 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 372
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 613 TVLPVRARSKVVGMEVRAGNLCVPPPPGKSPNMTSVVQIL 494
+++ R S + + G LCV PG P M S+V++L
Sbjct: 284 SLIETRGLSDEIRKCIHIGLLCVQENPGSRPTMASIVRML 323
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 29.1 bits (62), Expect = 2.9
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Frame = +2
Query: 110 VHTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEVQSLYQ-ASLDA 286
VH G+ TL S + ++ LN + EE+ +V+ E + L Q D
Sbjct: 370 VHINMSYCTGLGFRTLVSNYLGLDGLNHPLCEEIEALVDSTEVTPAELAEELMQDDDTDV 429
Query: 287 SLQGLI*A*SK----TAKQRKKLSVCLKED 364
L+G+I K +K +K++S+C D
Sbjct: 430 VLRGVISFVEKRKVERSKTKKEVSICKATD 459
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 164 PNVKVNSLNTQVMEEVSNIVNEIE-TNSGIEVQSLYQASLDASLQGL 301
PN + ME++ +++N I+ + G+ VQ+ SL+A L+ L
Sbjct: 812 PNEDMEEAKKNAMEDIESVMNRIDKSGEGVYVQASTLGSLEALLEFL 858
>At1g10050.1 68414.m01133 glycosyl hydrolase family 10 protein /
carbohydrate-binding domain-containing protein similar
to GB:AAD27896 to endoxylanases gi|1255238
(Thermoanaerobacterium thermosulfurigenes), gi|1813595
(Hordeum vulgare) and others ; contains Pfam profiles
PF00331: Glycosyl hydrolase family 10, PF02018:
Carbohydrate binding domain
Length = 1063
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 310 MIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLGGGLE 447
MIE C E ++ RGH IF +E + +P++ + GS L +E
Sbjct: 777 MIEFC----ERYNIKTRGHCIFWEVESAIQPWVQQLTGSKLEAAVE 818
>At4g13360.1 68417.m02089 enoyl-CoA hydratase/isomerase family
protein similar to CoA-thioester hydrolase CHY1
(beta-hydroxyisobutyryl-CoA hydrolase) [Arabidopsis
thaliana] GI:8572760; contains Pfam profile PF00378:
enoyl-CoA hydratase/isomerase family protein
Length = 381
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +1
Query: 259 VIISGKPG-CFIAGADI----SMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQG 423
VI+ G F AG DI + I+ K V + + + I +KPYI+ + G
Sbjct: 57 VIVEGSTSRAFCAGMDIKGVAAEIQKDKNTPLVQKVFTAEYTLICAIAAYKKPYISLMDG 116
Query: 424 SCLGGGLETALACKYRI 474
+G GL + +YR+
Sbjct: 117 ITMGFGLGLSGHGRYRV 133
>At4g04960.1 68417.m00721 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 686
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 568 VRAGNLCVPPPPGKSPNMTSVVQI 497
++ G LC P P K P+M VVQ+
Sbjct: 596 LQLGLLCAHPDPAKRPSMRQVVQV 619
>At3g24360.1 68416.m03058 enoyl-CoA hydratase/isomerase family
protein similar to CHY1 [gi:8572760]; contains Pfam
profile PF00388 enoyl-CoA hydratase/isomerase family
protein
Length = 418
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Frame = +1
Query: 259 VIISGKPG-CFIAGADISMIENCKTKEEVVSLSKR----GHEIFRRIEQSRKPYIAAIQG 423
V++ G F AG DI + ++ SL ++ + + +I RKPYI+ + G
Sbjct: 94 VVVEGSTSRAFCAGMDIKGVVAEILMDKNTSLVQKVFTAEYSLICKIAGYRKPYISLMDG 153
Query: 424 SCLGGGLETALACKYRI 474
+G GL + +YR+
Sbjct: 154 ITMGFGLGLSGHGRYRV 170
>At2g41750.1 68415.m05161 DTW domain-containing protein contains
Pfam domain, PF03942: DTW domain
Length = 253
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 506 SPNPVLESFTAMRYLHARAVSNPPPRQL 423
SP + F ++ L+ R +SNPPP +L
Sbjct: 102 SPAVTISEFKSLNLLNHREISNPPPLRL 129
>At2g19930.1 68415.m02329 RNA-dependent RNA polymerase family
protein contains Pfam domain, PF05183: RNA dependent RNA
polymerase
Length = 977
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -3
Query: 551 LCPSTAGQKSQHDFCSPNPVLESFTAMRYLHARAVSNPPPR 429
LCP T + S +P L +F+ L SNPP R
Sbjct: 461 LCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKR 501
>At1g15530.1 68414.m01868 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains pfam domains PF00139:
Legume lectins beta domain and PF00069: Protein kinase
domain
Length = 656
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 580 VGMEVRAGNLCVPPPPGKSPNMTSVVQILFWS 485
V + ++ G C P P K PNM +V +L S
Sbjct: 602 VELLLKLGLACCHPDPAKRPNMREIVSLLLGS 633
>At1g59890.1 68414.m06747 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1159
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 325 KTKEEV-VSLSKRGHEIFRRIEQSRKPYIAAIQGSCLGGGLETALACKYRIAVKD 486
+ +EEV V RG + R E + +P + I G GGL T A Y AVKD
Sbjct: 3 RVREEVYVEPQMRGPTVSSRGETNGRP--STISGGGTTGGLTTVDALTYLKAVKD 55
>At5g50640.1 68418.m06274 CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein contains Pfam profiles: PF00571 CBS domain,
PF00564: PB1 domain
Length = 548
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 534 GGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLGNCRSVSFP 665
GGGG+ LP + + ++L+G+ K+L C++++ P
Sbjct: 32 GGGGSDLLPRRSLTSSRSSISLSGERSGERTVKRLRLCKALTVP 75
>At5g50530.1 68418.m06258 CBS domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing
protein contains Pfam profiles: PF00571 CBS domain,
PF00564: PB1 domain
Length = 548
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 534 GGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLGNCRSVSFP 665
GGGG+ LP + + ++L+G+ K+L C++++ P
Sbjct: 32 GGGGSDLLPRRSLTSSRSSISLSGERSGERTVKRLRLCKALTVP 75
>At3g42120.1 68416.m04325 hypothetical protein
Length = 409
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -2
Query: 291 NEASRLA*YNDCTSIPEFVSISFTMLLTSSITWVLSEFTLTFG-ESKVTT*TPLTNL 124
N+ R+ C S P VSI T + T V EF + G + TT TP+T +
Sbjct: 236 NQLMRIELQRWCRSTPPLVSIDTTTCVDRHPTQVEPEFLIRAGFRVEFTTDTPVTTV 292
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 506 SPNPVLESFTAMRYLHARAVSNPPPRQLP 420
SP+P E + Y H S PPPR LP
Sbjct: 82 SPSPEPEHYPPPPYHHYITPSPPPPRPLP 110
>At3g02200.2 68416.m00199 proteasome family protein contains Pfam
domain, PF01399: PCI domain
Length = 417
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Frame = +2
Query: 92 AVPASQVHTKCKLVNGVYVVTLDSPNV----KVNSLNTQVM---EEVSNIVNEIETNSGI 250
A+ A + K +N V +V+ S + SL T++ + +S+I+ IE+N
Sbjct: 338 AITAKLIECKMDQMNQVLIVSRSSEREFGTKQWQSLRTKLATWKDNISSIITTIESNKVT 397
Query: 251 EVQSLYQASLDASLQGL 301
E S +S A++QGL
Sbjct: 398 EEGSQASSSSAAAIQGL 414
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,943,284
Number of Sequences: 28952
Number of extensions: 348153
Number of successful extensions: 1226
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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