Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060056.seq
(728 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 113 9e-26
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 113 9e-26
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 107 6e-24
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 99 3e-21
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 97 8e-21
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 96 2e-20
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 96 2e-20
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 96 2e-20
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 94 7e-20
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 93 2e-19
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 90 1e-18
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 90 1e-18
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 85 6e-17
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 82 3e-16
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 81 7e-16
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 81 7e-16
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 67 1e-11
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 63 2e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 63 2e-10
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 60 1e-09
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 59 3e-09
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 58 5e-09
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 58 5e-09
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 58 5e-09
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 58 8e-09
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 58 8e-09
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 58 8e-09
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 56 2e-08
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 56 2e-08
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 56 2e-08
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 55 4e-08
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 55 6e-08
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 55 6e-08
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 55 6e-08
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 55 6e-08
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 55 6e-08
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 54 7e-08
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 54 1e-07
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 54 1e-07
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 54 1e-07
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 54 1e-07
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 53 2e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 53 2e-07
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 52 4e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 52 4e-07
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 52 4e-07
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 52 5e-07
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 51 9e-07
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 50 1e-06
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 50 1e-06
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 50 2e-06
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 50 2e-06
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 49 3e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 48 6e-06
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 48 8e-06
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 48 8e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 47 1e-05
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 46 3e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 44 8e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 44 8e-05
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 43 2e-04
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 42 3e-04
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 42 3e-04
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 39 0.004
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 39 0.004
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 37 0.016
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 33 0.15
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 32 0.34
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 31 0.78
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 31 1.0
At4g10090.1 68417.m01651 expressed protein 31 1.0
At3g58460.1 68416.m06516 rhomboid family protein / ubiquitin-ass... 31 1.0
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 30 1.4
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1... 30 1.8
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 29 3.2
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 29 3.2
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 29 3.2
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 29 3.2
At2g28600.1 68415.m03476 expressed protein 28 5.5
At1g15820.1 68414.m01898 chlorophyll A-B binding protein, chloro... 28 5.5
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 28 7.3
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 28 7.3
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r... 27 9.6
At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA ... 27 9.6
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 27 9.6
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 27 9.6
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 27 9.6
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si... 27 9.6
At1g74790.1 68414.m08665 expressed protein contains similarity t... 27 9.6
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 113 bits (273), Expect = 9e-26
Identities = 53/73 (72%), Positives = 60/73 (82%)
Frame = +3
Query: 36 QATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 215
Q TNL+R TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQTL+WSATWP+EV+ LA +L
Sbjct: 306 QHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFL 365
Query: 216 GDYIQINIGSLQL 254
D + IGS L
Sbjct: 366 RDPYKAIIGSTDL 378
Score = 106 bits (255), Expect = 1e-23
Identities = 62/170 (36%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Frame = +2
Query: 230 DQYRIITTS----ANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRK 397
D Y+ I S AN +I Q+++I EK N+L LL+++ G+K +IFVETKR
Sbjct: 367 DPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMD----GSKILIFVETKRG 422
Query: 398 AENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXXXXXXXXVSNMX 577
+ ++R +R GWPA+ +HGDKTQ ERD VL +FK G
Sbjct: 423 CDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCV 482
Query: 578 XXXXXXXXXXXTSIVLGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 727
+GRTGR+ +KG ++ FFT N++ A++LV +LQEA
Sbjct: 483 VNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEA 532
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/66 (51%), Positives = 44/66 (66%)
Frame = +1
Query: 430 WLASCLYAWR*NSTRKR*SSVSVQGRCASILVATDVAARGLDVDGIKYVINFDYPNSSED 609
W A ++ + S R R + GR + I+ ATDVAARGLDV IK V+N+D+PN+ ED
Sbjct: 435 WPALAIHGDKTQSERDRVLAEFKSGR-SPIMTATDVAARGLDVKDIKCVVNYDFPNTLED 493
Query: 610 YIHRIG 627
YIHRIG
Sbjct: 494 YIHRIG 499
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 113 bits (273), Expect = 9e-26
Identities = 53/73 (72%), Positives = 60/73 (82%)
Frame = +3
Query: 36 QATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 215
Q TNL+R TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQTL+WSATWP+EV+ LA +L
Sbjct: 306 QHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFL 365
Query: 216 GDYIQINIGSLQL 254
D + IGS L
Sbjct: 366 RDPYKAIIGSTDL 378
Score = 84.6 bits (200), Expect = 6e-17
Identities = 44/97 (45%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Frame = +2
Query: 230 DQYRIITTS----ANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRK 397
D Y+ I S AN +I Q+++I EK N+L LL+++ G+K +IFVETKR
Sbjct: 367 DPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMD----GSKILIFVETKRG 422
Query: 398 AENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEG 508
+ ++R +R GWPA+ +HGDKTQ ERD VL +FK G
Sbjct: 423 CDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSG 459
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +1
Query: 430 WLASCLYAWR*NSTRKR*SSVSVQGRCASILVATDVAARGLDVDGIK 570
W A ++ + S R R + GR + I+ ATDVAARGL GI+
Sbjct: 435 WPALAIHGDKTQSERDRVLAEFKSGR-SPIMTATDVAARGLVSSGIR 480
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 107 bits (258), Expect = 6e-24
Identities = 49/71 (69%), Positives = 60/71 (84%)
Frame = +3
Query: 42 TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGD 221
TNL+R TYLVLDEADRMLDMGF+PQIRKI+ IRPDRQTL WSATWPKEV++L++ +L +
Sbjct: 242 TNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYN 301
Query: 222 YIQINIGSLQL 254
++ IGS L
Sbjct: 302 PYKVIIGSSDL 312
Score = 107 bits (256), Expect = 1e-23
Identities = 59/157 (37%), Positives = 87/157 (55%)
Frame = +2
Query: 257 ANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGW 436
AN I QIVD+ E +K NKL LL++I G++ ++F++TK+ + I+R +R GW
Sbjct: 314 ANRAIRQIVDVISESQKYNKLVKLLEDIMD----GSRILVFLDTKKGCDQITRQLRMDGW 369
Query: 437 PAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXXXXTS 616
PA+ +HGDK+Q ERD VL +F+ G
Sbjct: 370 PALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 429
Query: 617 IVLGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 727
+GRTGR+ +KGT+Y FFT +N+R AK+L ++LQEA
Sbjct: 430 HRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEA 466
Score = 64.5 bits (150), Expect = 7e-11
Identities = 27/37 (72%), Positives = 32/37 (86%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
I+ ATDVAARGLDV +KYVIN+D+P S EDY+HRIG
Sbjct: 397 IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIG 433
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 99.1 bits (236), Expect = 3e-21
Identities = 44/70 (62%), Positives = 58/70 (82%)
Frame = +3
Query: 33 LQATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDY 212
++ + Q+ + LVLDEADRMLDMGFEPQIRKI+ +I P RQTLM++ATWPKEV+K+A D
Sbjct: 574 MKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDL 633
Query: 213 LGDYIQINIG 242
L + +Q+NIG
Sbjct: 634 LVNPVQVNIG 643
Score = 87.8 bits (208), Expect = 6e-18
Identities = 55/163 (33%), Positives = 84/163 (51%)
Frame = +2
Query: 239 RIITTSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRN 418
R+ +AN I Q V++ + EKE +L +L+ SQE G+K IIF TKR ++++R+
Sbjct: 644 RVDELAANKAITQYVEVVPQMEKERRLEQILR----SQERGSKVIIFCSTKRLCDHLARS 699
Query: 419 IRRYGWPAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXX 598
+ R+ + AV +HGDKTQ ERD VL QF+ G +
Sbjct: 700 VGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPT 758
Query: 599 XXXXTSIVLGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 727
+GRTGR+ + G ++ FFT + + A DL+ VL+ A
Sbjct: 759 GVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGA 801
Score = 60.1 bits (139), Expect = 1e-09
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
+L+ATDVAARGLD+ I+ VIN+D+P EDY+HRIG
Sbjct: 732 VLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIG 768
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 97.5 bits (232), Expect = 8e-21
Identities = 43/72 (59%), Positives = 59/72 (81%)
Frame = +3
Query: 33 LQATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDY 212
++ +L + +YLVLDEADRMLDMGFEPQIRKI+ ++ RQTLM++ATWPKEV+K+A D
Sbjct: 368 MKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADL 427
Query: 213 LGDYIQINIGSL 248
L + Q+NIG++
Sbjct: 428 LVNPAQVNIGNV 439
Score = 87.8 bits (208), Expect = 6e-18
Identities = 51/157 (32%), Positives = 80/157 (50%)
Frame = +2
Query: 257 ANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGW 436
AN +I Q +++ EK ++L +L+ SQEPG+K IIF TKR + ++RN+ R +
Sbjct: 444 ANKSITQTIEVLAPMEKHSRLEQILR----SQEPGSKIIIFCSTKRMCDQLARNLTR-TF 498
Query: 437 PAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXXXXTS 616
A +HGDK+Q ERD+VL QF+ G +
Sbjct: 499 GAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYV 558
Query: 617 IVLGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 727
+GRTGR+ + G +Y FF +++ A DL+ +L+ A
Sbjct: 559 HRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGA 595
Score = 62.9 bits (146), Expect = 2e-10
Identities = 26/37 (70%), Positives = 32/37 (86%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
+LVATDVAARGLDV I+ V+N+D+PN EDY+HRIG
Sbjct: 526 VLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIG 562
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 95.9 bits (228), Expect = 2e-20
Identities = 43/72 (59%), Positives = 60/72 (83%)
Frame = +3
Query: 33 LQATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDY 212
++ +L++ +YLVLDEADRMLDMGFEPQIRKI+++I RQTLM++ATWPK V+K+A D
Sbjct: 297 MRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADL 356
Query: 213 LGDYIQINIGSL 248
L + Q+NIG++
Sbjct: 357 LVNPAQVNIGNV 368
Score = 86.2 bits (204), Expect = 2e-17
Identities = 51/157 (32%), Positives = 78/157 (49%)
Frame = +2
Query: 257 ANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGW 436
AN +I Q +++ EK+ +L +L+ SQEPG+K IIF TKR + ++RN+ R +
Sbjct: 373 ANKSITQHIEVVAPMEKQRRLEQILR----SQEPGSKVIIFCSTKRMCDQLTRNLTRQ-F 427
Query: 437 PAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXXXXTS 616
A +HGDK+Q ERD VL QF+ G
Sbjct: 428 GAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYV 487
Query: 617 IVLGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 727
+GRTGR+ + G ++ FF +S+ A DL+ +L+ A
Sbjct: 488 HRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGA 524
Score = 62.5 bits (145), Expect = 3e-10
Identities = 26/37 (70%), Positives = 32/37 (86%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
+LVATDVAARGLDV I+ V+N+D+PN EDY+HRIG
Sbjct: 455 VLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIG 491
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 95.9 bits (228), Expect = 2e-20
Identities = 43/72 (59%), Positives = 60/72 (83%)
Frame = +3
Query: 33 LQATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDY 212
++ +L++ +YLVLDEADRMLDMGFEPQIRKI+++I RQTLM++ATWPK V+K+A D
Sbjct: 297 MRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADL 356
Query: 213 LGDYIQINIGSL 248
L + Q+NIG++
Sbjct: 357 LVNPAQVNIGNV 368
Score = 86.2 bits (204), Expect = 2e-17
Identities = 51/157 (32%), Positives = 78/157 (49%)
Frame = +2
Query: 257 ANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGW 436
AN +I Q +++ EK+ +L +L+ SQEPG+K IIF TKR + ++RN+ R +
Sbjct: 373 ANKSITQHIEVVAPMEKQRRLEQILR----SQEPGSKVIIFCSTKRMCDQLTRNLTRQ-F 427
Query: 437 PAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXXXXTS 616
A +HGDK+Q ERD VL QF+ G
Sbjct: 428 GAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYV 487
Query: 617 IVLGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 727
+GRTGR+ + G ++ FF +S+ A DL+ +L+ A
Sbjct: 488 HRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGA 524
Score = 62.5 bits (145), Expect = 3e-10
Identities = 26/37 (70%), Positives = 32/37 (86%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
+LVATDVAARGLDV I+ V+N+D+PN EDY+HRIG
Sbjct: 455 VLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIG 491
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 95.9 bits (228), Expect = 2e-20
Identities = 43/72 (59%), Positives = 60/72 (83%)
Frame = +3
Query: 33 LQATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDY 212
++ +L++ +YLVLDEADRMLDMGFEPQIRKI+++I RQTLM++ATWPK V+K+A D
Sbjct: 297 MRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADL 356
Query: 213 LGDYIQINIGSL 248
L + Q+NIG++
Sbjct: 357 LVNPAQVNIGNV 368
Score = 86.2 bits (204), Expect = 2e-17
Identities = 51/157 (32%), Positives = 78/157 (49%)
Frame = +2
Query: 257 ANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGW 436
AN +I Q +++ EK+ +L +L+ SQEPG+K IIF TKR + ++RN+ R +
Sbjct: 373 ANKSITQHIEVVAPMEKQRRLEQILR----SQEPGSKVIIFCSTKRMCDQLTRNLTRQ-F 427
Query: 437 PAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXXXXTS 616
A +HGDK+Q ERD VL QF+ G
Sbjct: 428 GAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYV 487
Query: 617 IVLGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 727
+GRTGR+ + G ++ FF +S+ A DL+ +L+ A
Sbjct: 488 HRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGA 524
Score = 62.5 bits (145), Expect = 3e-10
Identities = 26/37 (70%), Positives = 32/37 (86%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
+LVATDVAARGLDV I+ V+N+D+PN EDY+HRIG
Sbjct: 455 VLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIG 491
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 94.3 bits (224), Expect = 7e-20
Identities = 41/72 (56%), Positives = 57/72 (79%)
Frame = +3
Query: 33 LQATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDY 212
++A + R +YLVLDEADRM D+GFEPQ+R I+ QIRPDRQTL++SAT P +V+KLA +
Sbjct: 368 MKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREI 427
Query: 213 LGDYIQINIGSL 248
L D I++ +G +
Sbjct: 428 LSDPIRVTVGEV 439
Score = 48.8 bits (111), Expect = 4e-06
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
+L+ATDVAARGLD+ +K V+N+D + ++HRIG
Sbjct: 526 VLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIG 562
Score = 44.4 bits (100), Expect = 8e-05
Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 1/158 (0%)
Frame = +2
Query: 257 ANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGW 436
AN +I Q+V++ + KL LL+++ + G ++F K + I + +
Sbjct: 442 ANEDITQVVNVIPSDAE--KLPWLLEKLPGMIDEG-DVLVFASKKATVDEIEAQLTLNSF 498
Query: 437 PAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXXXXTS 616
+HGDK Q R E L +FK G
Sbjct: 499 KVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHV 558
Query: 617 IVLGRTGRSKSK-GTSYAFFTPSNSRQAKDLVSVLQEA 727
+GRTGR+ + G +Y T +R A +LV+ L A
Sbjct: 559 HRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAA 596
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 93.1 bits (221), Expect = 2e-19
Identities = 40/67 (59%), Positives = 55/67 (82%)
Frame = +3
Query: 42 TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGD 221
TNL+R TYLV+DEADRM DMGFEPQI +I++ IRPDRQT+++SAT+P++V+ LA L
Sbjct: 542 TNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNK 601
Query: 222 YIQINIG 242
++I +G
Sbjct: 602 PVEIQVG 608
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/38 (60%), Positives = 31/38 (81%)
Frame = +1
Query: 514 SILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
++L+AT VAARGLDV ++ V+NFD PN EDY+HR+G
Sbjct: 666 NLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVG 703
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 623 LGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 721
+GRTGR+ KG + F + +++ A DLV L+
Sbjct: 702 VGRTGRAGRKGCAVTFISEDDAKYAPDLVKALE 734
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 90.2 bits (214), Expect = 1e-18
Identities = 50/161 (31%), Positives = 83/161 (51%)
Frame = +2
Query: 245 ITTSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIR 424
+ +ANH+++QI+++ E ++ +L LL++ +SQ+ + ++F K +AE + R ++
Sbjct: 330 VDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKN--RVLVFALYKVEAERLERFLQ 387
Query: 425 RYGWPAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXX 604
+ GW AV +HG+K Q ER L FKEG +
Sbjct: 388 QRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTT 447
Query: 605 XXTSIVLGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 727
+GRTGR+ KG ++ FFTP N A +LV+VL+EA
Sbjct: 448 EDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREA 488
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = +3
Query: 48 LQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLG-DY 224
L +++VLDEADRMLDMGFE +R I+ RQ +M+SATWP +V KLA++++ +
Sbjct: 263 LSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNP 322
Query: 225 IQINIGSLQL 254
I++ IGS+ L
Sbjct: 323 IKVIIGSVDL 332
Score = 64.9 bits (151), Expect = 5e-11
Identities = 32/69 (46%), Positives = 46/69 (66%)
Frame = +1
Query: 421 QEIWLASCLYAWR*NSTRKR*SSVSVQGRCASILVATDVAARGLDVDGIKYVINFDYPNS 600
Q W A ++ + S R R S+ +G C +LVATDVAARGLD+ ++ VIN+ +P +
Sbjct: 388 QRGWKAVSIHGNKAQSERTRSLSLFKEGSCP-LLVATDVAARGLDIPDVEVVINYTFPLT 446
Query: 601 SEDYIHRIG 627
+EDY+HRIG
Sbjct: 447 TEDYVHRIG 455
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/67 (58%), Positives = 55/67 (82%)
Frame = +3
Query: 42 TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGD 221
TNL+R T+LV+DEADRM DMGFEPQI +II+ IRP+RQT+++SAT+P++V+ LA L
Sbjct: 675 TNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNK 734
Query: 222 YIQINIG 242
++I +G
Sbjct: 735 PVEIQVG 741
Score = 57.2 bits (132), Expect = 1e-08
Identities = 36/154 (23%), Positives = 71/154 (46%)
Frame = +2
Query: 260 NHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWP 439
N +I Q+V++ E ++ +L L+ +G+ E G K ++FV+++ K + + R++ + +P
Sbjct: 747 NKDITQLVEVRPESDRFLRL---LELLGEWSEKG-KILVFVQSQEKCDALYRDMIKSSYP 802
Query: 440 AVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXXXXTSI 619
+ +HG K Q +R+ + FK +
Sbjct: 803 CLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVH 862
Query: 620 VLGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQ 721
+GRTGR+ KG + F + +++ A DLV L+
Sbjct: 863 RVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALE 896
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/38 (60%), Positives = 31/38 (81%)
Frame = +1
Query: 514 SILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
++L+AT VAARGLDV ++ V+NFD PN EDY+HR+G
Sbjct: 828 NLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVG 865
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 84.6 bits (200), Expect = 6e-17
Identities = 40/70 (57%), Positives = 56/70 (80%), Gaps = 4/70 (5%)
Frame = +3
Query: 45 NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMWSATWPKEVKKLAEDY 212
++Q +L LDEADRMLDMGFEPQIRKI+EQ+ R RQTL++SAT+P+E+++LA D+
Sbjct: 308 SMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADF 367
Query: 213 LGDYIQINIG 242
L +YI + +G
Sbjct: 368 LANYIFLAVG 377
Score = 69.3 bits (162), Expect = 2e-12
Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Frame = +2
Query: 254 SANHNILQIVDICQEHEKENKLNVLL--QEIGQSQEPGAKTIIFVETKRKAENISRNIRR 427
S+ I+Q V+ + +K + L LL Q Q A T++FVETKR A+++ +
Sbjct: 381 SSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCI 440
Query: 428 YGWPAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXXX 607
G+PA +HGD+TQQER+ L FK G + ++
Sbjct: 441 NGFPATSIHGDRTQQEREVALKAFKSG--RTPILVATDVAARGLDIPHVAHVVNFDLPND 498
Query: 608 XTSIV--LGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 727
V +GRTGR+ G + AFF N+ A+ L ++QEA
Sbjct: 499 IDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEA 540
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/37 (67%), Positives = 31/37 (83%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
ILVATDVAARGLD+ + +V+NFD PN +DY+HRIG
Sbjct: 471 ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIG 507
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 82.2 bits (194), Expect = 3e-16
Identities = 39/70 (55%), Positives = 56/70 (80%), Gaps = 4/70 (5%)
Frame = +3
Query: 45 NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-RPD---RQTLMWSATWPKEVKKLAEDY 212
+LQ +L LDEADRMLDMGFEPQIRKI++Q+ P RQT+++SAT+P+E+++LA D+
Sbjct: 295 SLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDF 354
Query: 213 LGDYIQINIG 242
L +YI + +G
Sbjct: 355 LSNYIFLAVG 364
Score = 71.3 bits (167), Expect = 6e-13
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Frame = +2
Query: 254 SANHNILQIVDICQEHEKENKLNVLL--QEIGQSQEPGAKTIIFVETKRKAENISRNIRR 427
S+ I+Q V+ + +K + L LL Q +Q A T++FVETK+ A+++ +
Sbjct: 368 SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCI 427
Query: 428 YGWPAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXXX 607
G+PA +HGD++QQER+ L FK G + ++
Sbjct: 428 NGFPATTIHGDRSQQEREVALRSFKTG--RTPILVATDVAARGLDIPHVAHVVNFDLPND 485
Query: 608 XTSIV--LGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 727
V +GRTGR+ + G + AFF +N+ AK L ++QEA
Sbjct: 486 IDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEA 527
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/37 (67%), Positives = 31/37 (83%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
ILVATDVAARGLD+ + +V+NFD PN +DY+HRIG
Sbjct: 458 ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIG 494
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 81.0 bits (191), Expect = 7e-16
Identities = 37/70 (52%), Positives = 55/70 (78%), Gaps = 4/70 (5%)
Frame = +3
Query: 45 NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMWSATWPKEVKKLAEDY 212
++Q +L LDEADRMLDMGFEPQIRKI+EQ+ R RQT+++SAT+P ++++LA D+
Sbjct: 300 SMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADF 359
Query: 213 LGDYIQINIG 242
+ +YI + +G
Sbjct: 360 MSNYIFLAVG 369
Score = 76.6 bits (180), Expect = 2e-14
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 2/160 (1%)
Frame = +2
Query: 254 SANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYG 433
S+ I Q V+ QE +K + L LL ++Q+ + T++FVETKR A+ + +
Sbjct: 373 SSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNE 432
Query: 434 WPAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXXXXT 613
+PA +HGD+TQQER+ L FK G + ++
Sbjct: 433 FPATSIHGDRTQQEREVALRSFKTG--RTPILVATDVAARGLDIPHVAHVVNFDLPNDID 490
Query: 614 SIV--LGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 727
V +GRTGR+ G + AFF +N++ A+ L ++QEA
Sbjct: 491 DYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEA 530
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/37 (67%), Positives = 31/37 (83%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
ILVATDVAARGLD+ + +V+NFD PN +DY+HRIG
Sbjct: 461 ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIG 497
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 81.0 bits (191), Expect = 7e-16
Identities = 37/70 (52%), Positives = 55/70 (78%), Gaps = 4/70 (5%)
Frame = +3
Query: 45 NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMWSATWPKEVKKLAEDY 212
++Q +L LDEADRMLDMGFEPQIRKI+EQ+ R RQT+++SAT+P ++++LA D+
Sbjct: 300 SMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADF 359
Query: 213 LGDYIQINIG 242
+ +YI + +G
Sbjct: 360 MSNYIFLAVG 369
Score = 76.6 bits (180), Expect = 2e-14
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 2/160 (1%)
Frame = +2
Query: 254 SANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYG 433
S+ I Q V+ QE +K + L LL ++Q+ + T++FVETKR A+ + +
Sbjct: 373 SSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNE 432
Query: 434 WPAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXXXXT 613
+PA +HGD+TQQER+ L FK G + ++
Sbjct: 433 FPATSIHGDRTQQEREVALRSFKTG--RTPILVATDVAARGLDIPHVAHVVNFDLPNDID 490
Query: 614 SIV--LGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 727
V +GRTGR+ G + AFF +N++ A+ L ++QEA
Sbjct: 491 DYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEA 530
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/37 (67%), Positives = 31/37 (83%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
ILVATDVAARGLD+ + +V+NFD PN +DY+HRIG
Sbjct: 461 ILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIG 497
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 67.3 bits (157), Expect = 1e-11
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = +3
Query: 45 NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDY 224
+L C YL LDEADR++D+GFE IR++ + + RQTL++SAT P +++ A L
Sbjct: 299 SLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKP 358
Query: 225 IQINIG 242
+ +N+G
Sbjct: 359 VTVNVG 364
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
+LVATDVA++GLD I++VIN+D P E+Y+HRIG
Sbjct: 450 VLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIG 486
Score = 41.9 bits (94), Expect = 4e-04
Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 1/159 (0%)
Frame = +2
Query: 254 SANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYG 433
+AN +++Q V+ ++ E K+ LL+ + ++ P +IF E K ++I + G
Sbjct: 368 AANLDVIQEVEYVKQ---EAKIVYLLECLQKTSPP---VLIFCENKADVDDIHEYLLLKG 421
Query: 434 WPAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXXXXT 613
AV +HG K Q++R+ + FK G
Sbjct: 422 VEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 481
Query: 614 SIVLGRTGRSKSKGTSYAFFTPSNSRQA-KDLVSVLQEA 727
+GRTGR G + F + S DL +LQEA
Sbjct: 482 VHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEA 520
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/82 (40%), Positives = 50/82 (60%)
Frame = +3
Query: 36 QATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 215
++ L YLVLDEAD+ML +GFE + I+E + RQ++++SAT P VKKLA YL
Sbjct: 246 RSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYL 305
Query: 216 GDYIQINIGSLQLPQITTFFKL 281
+ + I++ Q ++ KL
Sbjct: 306 DNPLNIDLVGDQDEKLAEGIKL 327
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/52 (44%), Positives = 36/52 (69%)
Frame = +1
Query: 472 RKR*SSVSVQGRCASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
R+R + QG+ ++LVATDVA+RGLD+ + VI+++ PN E ++HR G
Sbjct: 389 RERTLNAFRQGKF-TVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSG 439
Score = 42.7 bits (96), Expect = 2e-04
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
Frame = +2
Query: 359 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXX 538
G KTI+F +TKR A+ +S + +HGD +Q +R+ L F++G
Sbjct: 351 GGKTIVFTQTKRDADEVSLALSN-SIATEALHGDISQHQRERTLNAFRQG--KFTVLVAT 407
Query: 539 XXXXXXXXVSNMXXXXXXXXXXXXTSIV--LGRTGRSKSKGTSYAFFTPSNSRQAKDL 706
+ N+ + V GRTGR+ +G++ T S R + L
Sbjct: 408 DVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSL 465
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/66 (40%), Positives = 42/66 (63%)
Frame = +3
Query: 45 NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDY 224
+L C L LDEADR++D+GFE IR + + + RQTL++SAT P +++ A L
Sbjct: 250 SLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKP 309
Query: 225 IQINIG 242
+ +N+G
Sbjct: 310 VTVNVG 315
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
+LVATDVA++GLD I++VIN+D P E+Y+HRIG
Sbjct: 401 VLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIG 437
Score = 41.9 bits (94), Expect = 4e-04
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 1/159 (0%)
Frame = +2
Query: 254 SANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYG 433
+AN +++Q V+ ++ E K+ LL+ + ++ P +IF E K ++I + G
Sbjct: 319 AANLDVIQEVEYVKQ---EAKIVYLLECLQKTTPP---VLIFCENKADVDDIHEYLLLKG 372
Query: 434 WPAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXXXXT 613
AV +HG K Q++RD + FK G
Sbjct: 373 VEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENY 432
Query: 614 SIVLGRTGRSKSKGTSYAFFTPSNSR-QAKDLVSVLQEA 727
+GRTGR G + F + S DL +LQEA
Sbjct: 433 VHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEA 471
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/65 (44%), Positives = 42/65 (64%)
Frame = +3
Query: 6 RSRTSGSPGLQATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPK 185
+ +PG AT L+ LVLDEAD +LDMGF I +II + +RQT ++SAT P+
Sbjct: 194 KDHIENTPGF-ATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSATVPE 252
Query: 186 EVKKL 200
EV+++
Sbjct: 253 EVRQI 257
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
ILV +DV+ARG+D + V+ P E YIHR+G
Sbjct: 365 ILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLG 401
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 17/83 (20%)
Frame = +3
Query: 48 LQRCTYLVLDEADRMLDMGFEPQIRKIIE-----QIRPD------------RQTLMWSAT 176
L +C Y+VLDEADRM+DMGFEPQ+ +++ ++P+ R T M+SAT
Sbjct: 461 LNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSAT 520
Query: 177 WPKEVKKLAEDYLGDYIQINIGS 245
P V++LA YL + + + IG+
Sbjct: 521 MPPGVERLARKYLRNPVVVTIGT 543
Score = 51.6 bits (118), Expect = 5e-07
Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 1/154 (0%)
Frame = +2
Query: 269 ILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVC 448
I Q V + +E EK +L LL E+G+ I+FV TK+ ++I++N+ + G+
Sbjct: 551 ISQHVIMMKESEKFFRLQKLLDELGEKT-----AIVFVNTKKNCDSIAKNLDKAGYRVTT 605
Query: 449 MHGDKTQQERDEVLYQFK-EGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXXXXTSIVL 625
+HG K+Q++R+ L F+ + V+++ T +
Sbjct: 606 LHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRI- 664
Query: 626 GRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 727
GRTGR+ G + +F T ++ DL +L ++
Sbjct: 665 GRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQS 698
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +1
Query: 514 SILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
++LVATDV RG+D+ + +VIN+D P E Y HRIG
Sbjct: 628 NVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIG 665
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/42 (59%), Positives = 33/42 (78%)
Frame = +1
Query: 502 GRCASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
G C +ILV TDVA+RGLD+ + VIN+D P +S+DYIHR+G
Sbjct: 309 GEC-NILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVG 349
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/67 (41%), Positives = 45/67 (67%)
Frame = +3
Query: 45 NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDY 224
+L+ YLVLDEADR+L+ FE + +I+E+I +R+T ++SAT K+V+KL L +
Sbjct: 161 SLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNP 220
Query: 225 IQINIGS 245
++I S
Sbjct: 221 VKIEAAS 227
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/67 (37%), Positives = 44/67 (65%)
Frame = +3
Query: 39 ATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLG 218
A NL ++VLDEAD+ML +GF + I+E++ RQ++M+SAT P ++ L + YL
Sbjct: 245 ALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLN 304
Query: 219 DYIQINI 239
+ + +++
Sbjct: 305 NPLTVDL 311
Score = 52.4 bits (120), Expect = 3e-07
Identities = 21/38 (55%), Positives = 31/38 (81%)
Frame = +1
Query: 514 SILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
+ILVATDVAARGLDV + +I+++ PN++E ++HR G
Sbjct: 400 NILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTG 437
Score = 45.2 bits (102), Expect = 4e-05
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Frame = +2
Query: 359 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXX 538
G K I+F +TKR A+ +S + R + +HGD +Q +R+ L F++G
Sbjct: 349 GGKCIVFTQTKRDADRLSYALAR-SFKCEALHGDISQSQRERTLAGFRDG--HFNILVAT 405
Query: 539 XXXXXXXXVSNMXXXXXXXXXXXXTSIV--LGRTGRSKSKGTSYAFFTPSNSRQAK 700
V N+ + V GRTGR+ KG++ ++ SR K
Sbjct: 406 DVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVK 461
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 58.4 bits (135), Expect = 5e-09
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = +3
Query: 48 LQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYI 227
L+ C LV+DEAD++L + F+P I ++I+ + RQ LM+SAT+P VK + YL
Sbjct: 294 LKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPY 353
Query: 228 QINI-GSLQLPQITTFF 275
IN+ L L +T ++
Sbjct: 354 IINLMDQLTLMGVTQYY 370
Score = 54.8 bits (126), Expect = 6e-08
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +1
Query: 502 GRCASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTF 642
G C + LV TD+ RG+D+ + VINFD+P +SE Y+HR+G + F
Sbjct: 440 GACRN-LVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRF 485
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 57.6 bits (133), Expect = 8e-09
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = +3
Query: 48 LQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYI 227
L+ C+ LV+DEAD++L F+P + +I + RQ LM+SAT+P VK + +L +
Sbjct: 271 LKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPY 330
Query: 228 QINI-GSLQLPQITTFF 275
IN+ L L IT F+
Sbjct: 331 VINLMDELTLKGITQFY 347
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +1
Query: 502 GRCASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTF 642
G C + LV TD+ RG+D+ + VINFD+P ++E Y+HR+G + F
Sbjct: 417 GACRN-LVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRF 462
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 57.6 bits (133), Expect = 8e-09
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = +3
Query: 48 LQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYI 227
L+ C+ LV+DEAD++L F+P + +I + RQ LM+SAT+P VK + +L +
Sbjct: 271 LKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPY 330
Query: 228 QINI-GSLQLPQITTFF 275
IN+ L L IT F+
Sbjct: 331 VINLMDELTLKGITQFY 347
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +1
Query: 502 GRCASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTF 642
G C + LV TD+ RG+D+ + VINFD+P ++E Y+HR+G + F
Sbjct: 417 GACRN-LVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRF 462
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 57.6 bits (133), Expect = 8e-09
Identities = 25/67 (37%), Positives = 44/67 (65%)
Frame = +3
Query: 39 ATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLG 218
A NL ++VLDEAD+ML +GF + I++++ RQ++M+SAT P ++ L + YL
Sbjct: 257 ALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLN 316
Query: 219 DYIQINI 239
+ + I++
Sbjct: 317 NPLTIDL 323
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/38 (60%), Positives = 31/38 (81%)
Frame = +1
Query: 514 SILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
SILVATDVAARGLDV + VI+++ PN++E ++HR G
Sbjct: 412 SILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTG 449
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Frame = +2
Query: 359 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXX 538
G K I+F +TKR A+ ++ + + + +HGD +Q +R+ L F++G
Sbjct: 361 GGKCIVFTQTKRDADRLAFGLAK-SYKCEALHGDISQAQRERTLAGFRDG--NFSILVAT 417
Query: 539 XXXXXXXXVSNMXXXXXXXXXXXXTSIV--LGRTGRSKSKGTSYAFFTPSNSRQAK 700
V N+ + V GRTGR+ KG++ +R K
Sbjct: 418 DVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVK 473
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 56.4 bits (130), Expect = 2e-08
Identities = 27/54 (50%), Positives = 36/54 (66%)
Frame = +3
Query: 39 ATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 200
AT L LVLDEAD +LDMGF I +II + RQT ++SAT P+EV+++
Sbjct: 532 ATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQI 585
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +1
Query: 511 ASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
A ILV +DV+ARG+D + V+ P+ E YIHR+G
Sbjct: 691 AIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLG 729
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 56.0 bits (129), Expect = 2e-08
Identities = 23/39 (58%), Positives = 31/39 (79%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGEN 633
+L+ATDV ARG+D GI VIN+D+P+S+ YIHRIG +
Sbjct: 433 VLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRS 471
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +3
Query: 45 NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-RPDRQTLMWSATWPKEVKKLAEDYLGD 221
+L + YLVLDE+D++ + QI +++ P ++SAT P V++LA + D
Sbjct: 279 DLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHD 338
Query: 222 YIQINIG 242
+++ IG
Sbjct: 339 AVRVIIG 345
Score = 35.9 bits (79), Expect = 0.028
Identities = 28/141 (19%), Positives = 54/141 (38%)
Frame = +2
Query: 305 KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 484
+E KL L Q +S P +IFV++K +A+ + ++ A +H D ER+
Sbjct: 364 EEGKLLALRQSFAESLNP--PVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGEREN 421
Query: 485 VLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXXXXTSIVLGRTGRSKSKGTSY 664
+ QF+ G N +GR+GR+ G +
Sbjct: 422 AVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAI 481
Query: 665 AFFTPSNSRQAKDLVSVLQEA 727
F+T + +++ + + +
Sbjct: 482 TFYTEQDVPFLRNIANTMMSS 502
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/56 (42%), Positives = 35/56 (62%)
Frame = +1
Query: 511 ASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTFKIKRNIICFLYP 678
+ +L+ TDVAARGLD+ GI YV+ +D P + +IHR+G + + I FL P
Sbjct: 320 SGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMP 375
Score = 50.8 bits (116), Expect = 9e-07
Identities = 25/60 (41%), Positives = 41/60 (68%)
Frame = +3
Query: 66 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGS 245
L+LDEADR+LDMGF+ Q+ II ++ R+T ++SAT + V LA+ L + +++ G+
Sbjct: 171 LILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGA 230
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 55.2 bits (127), Expect = 4e-08
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Frame = +3
Query: 24 SPGLQATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLA 203
+P + LQ L+LDEADR+LD F+ Q+ II Q+ RQTL++SAT K+VK LA
Sbjct: 211 TPNFECPQLQ---ILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVKDLA 267
Query: 204 EDYLGD--YIQIN 236
L D YI ++
Sbjct: 268 RLSLRDPEYISVH 280
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 514 SILVATDVAARGLDVD-GIKYVINFDYPNSSEDYIHRIGENWTFKIKRNIICFLYP 678
S+L TDV ARGLD D + +V+ D P YIHR+G F + + FL P
Sbjct: 369 SVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTP 424
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 54.8 bits (126), Expect = 6e-08
Identities = 23/52 (44%), Positives = 35/52 (67%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTFKIKRNIICFL 672
ILVATD+ RG+D++ + VIN+D P+S++ Y+HR+G F K I F+
Sbjct: 341 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 392
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/82 (30%), Positives = 43/82 (52%)
Frame = +2
Query: 263 HNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPA 442
H ++Q E EK KLN LL + +Q +IFV++ +A +++ + +P+
Sbjct: 261 HGLVQHYIKLSEMEKNRKLNDLLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPS 315
Query: 443 VCMHGDKTQQERDEVLYQFKEG 508
+C+H +Q+ER FKEG
Sbjct: 316 ICIHSGMSQEERLTRYKSFKEG 337
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/66 (27%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Frame = +3
Query: 45 NLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGD 221
+L+ + +LDE D+ML+ + +++I + D+Q +M+SAT KE++ + + ++ D
Sbjct: 187 SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQD 246
Query: 222 YIQINI 239
++I +
Sbjct: 247 PMEIYV 252
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 54.8 bits (126), Expect = 6e-08
Identities = 23/52 (44%), Positives = 35/52 (67%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTFKIKRNIICFL 672
ILVATD+ RG+D++ + VIN+D P+S++ Y+HR+G F K I F+
Sbjct: 258 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 309
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/82 (30%), Positives = 43/82 (52%)
Frame = +2
Query: 263 HNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPA 442
H ++Q E EK KLN LL + +Q +IFV++ +A +++ + +P+
Sbjct: 178 HGLVQHYIKLSEMEKTRKLNDLLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPS 232
Query: 443 VCMHGDKTQQERDEVLYQFKEG 508
+C+H +Q+ER FKEG
Sbjct: 233 ICIHSGMSQEERLTRYKSFKEG 254
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/66 (27%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Frame = +3
Query: 45 NLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGD 221
+L+ + +LDE D+ML+ + +++I + D+Q +M+SAT KE++ + + ++ D
Sbjct: 104 SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQD 163
Query: 222 YIQINI 239
++I +
Sbjct: 164 PMEIYV 169
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 54.8 bits (126), Expect = 6e-08
Identities = 23/52 (44%), Positives = 35/52 (67%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTFKIKRNIICFL 672
ILVATD+ RG+D++ + VIN+D P+S++ Y+HR+G F K I F+
Sbjct: 341 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 392
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/82 (30%), Positives = 43/82 (52%)
Frame = +2
Query: 263 HNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPA 442
H ++Q E EK KLN LL + +Q +IFV++ +A +++ + +P+
Sbjct: 261 HGLVQHYIKLSEMEKTRKLNDLLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPS 315
Query: 443 VCMHGDKTQQERDEVLYQFKEG 508
+C+H +Q+ER FKEG
Sbjct: 316 ICIHSGMSQEERLTRYKSFKEG 337
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/66 (27%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Frame = +3
Query: 45 NLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGD 221
+L+ + +LDE D+ML+ + +++I + D+Q +M+SAT KE++ + + ++ D
Sbjct: 187 SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQD 246
Query: 222 YIQINI 239
++I +
Sbjct: 247 PMEIYV 252
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = +3
Query: 48 LQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYI 227
L+ C LV+DEAD++L F+P + ++I+ + +RQ LM+SAT+P VK + +L
Sbjct: 264 LKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPY 323
Query: 228 QINI-GSLQLPQITTFF 275
IN+ L L +T ++
Sbjct: 324 VINLMDQLTLMGVTQYY 340
Score = 54.8 bits (126), Expect = 6e-08
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +1
Query: 502 GRCASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTF 642
G C + LV TD+ RG+D+ + VINFD+P +SE Y+HR+G + F
Sbjct: 410 GACRN-LVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRF 455
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = +3
Query: 48 LQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYI 227
L+ C LV+DEAD++L F+P + ++I+ + +RQ LM+SAT+P VK + +L
Sbjct: 264 LKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPY 323
Query: 228 QINI-GSLQLPQITTFF 275
IN+ L L +T ++
Sbjct: 324 VINLMDQLTLMGVTQYY 340
Score = 54.8 bits (126), Expect = 6e-08
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +1
Query: 502 GRCASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTF 642
G C + LV TD+ RG+D+ + VINFD+P +SE Y+HR+G + F
Sbjct: 410 GACRN-LVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRF 455
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 54.4 bits (125), Expect = 7e-08
Identities = 26/52 (50%), Positives = 34/52 (65%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTFKIKRNIICFL 672
+L+ TDV ARG+DV + VIN+D PN+ E YIHRIG + F K I F+
Sbjct: 327 VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 378
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +3
Query: 66 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI-- 239
L+LDE+D ML GF+ QI + + PD Q + SAT P E+ ++ ++ + ++I +
Sbjct: 181 LILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKR 240
Query: 240 GSLQLPQITTFF 275
L L I FF
Sbjct: 241 DELTLEGIKQFF 252
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +2
Query: 365 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEG 508
+ +IF TKRK + +S +R + + MHGD Q+ERD ++ +F+ G
Sbjct: 276 QAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSG 323
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTFKIKRNIICFL 672
+L+ TD+ ARG+DV + VINFD P E+Y+HRIG + F K I F+
Sbjct: 333 VLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFM 384
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 69 VLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI--G 242
VLDEAD ML GF+ QI I + + Q ++SAT P E ++ ++ ++I +
Sbjct: 188 VLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD 247
Query: 243 SLQLPQITTFF 275
L L I F+
Sbjct: 248 ELTLEGIKQFY 258
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/114 (21%), Positives = 44/114 (38%)
Frame = +2
Query: 365 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXX 544
+++IFV T+RK + ++ +R HGD Q RD ++ +F+ G
Sbjct: 282 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 341
Query: 545 XXXXXXVSNMXXXXXXXXXXXXTSIVLGRTGRSKSKGTSYAFFTPSNSRQAKDL 706
++ +GR+GR KG + F T + R D+
Sbjct: 342 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADI 395
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTFKIKRNIICFL 672
+L+ TD+ ARG+DV + VINFD P E+Y+HRIG + F K I F+
Sbjct: 331 VLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFV 382
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +3
Query: 36 QATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 215
Q+ VLDEAD ML GF+ QI I + + P Q ++SAT P E ++ ++
Sbjct: 175 QSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 234
Query: 216 GDYIQINI--GSLQLPQITTFF 275
++I + L L I F+
Sbjct: 235 SKPVRILVKRDELTLEGIKQFY 256
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/114 (21%), Positives = 44/114 (38%)
Frame = +2
Query: 365 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXX 544
+++IFV T+RK + ++ +R HGD Q RD ++ +F+ G
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339
Query: 545 XXXXXXVSNMXXXXXXXXXXXXTSIVLGRTGRSKSKGTSYAFFTPSNSRQAKDL 706
++ +GR+GR KG + F T + R D+
Sbjct: 340 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 393
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTFKIKRNIICFL 672
+L+ TD+ ARG+DV + VINFD P E+Y+HRIG + F K I F+
Sbjct: 331 VLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFV 382
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +3
Query: 69 VLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI--G 242
VLDEAD ML GF+ QI I + + P Q ++SAT P E ++ ++ ++I +
Sbjct: 186 VLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRD 245
Query: 243 SLQLPQITTFF 275
L L I F+
Sbjct: 246 ELTLEGIKQFY 256
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/114 (21%), Positives = 44/114 (38%)
Frame = +2
Query: 365 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXX 544
+++IFV T+RK + ++ +R HGD Q RD ++ +F+ G
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339
Query: 545 XXXXXXVSNMXXXXXXXXXXXXTSIVLGRTGRSKSKGTSYAFFTPSNSRQAKDL 706
++ +GR+GR KG + F T + R D+
Sbjct: 340 RGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDI 393
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/42 (54%), Positives = 31/42 (73%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTF 642
+L+A+DV ARG+DV + +VIN+D PN+ E YIHRIG F
Sbjct: 314 VLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRF 355
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/56 (37%), Positives = 34/56 (60%)
Frame = +3
Query: 66 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 233
LVLDE+D ML G + QI + + D Q + SAT P+E+ ++ E ++ D ++I
Sbjct: 168 LVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRI 223
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/46 (36%), Positives = 30/46 (65%)
Frame = +2
Query: 365 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFK 502
+ IIF T++K + ++ +R + MHGDK Q+ERD+++ QF+
Sbjct: 263 QAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFR 308
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/54 (48%), Positives = 35/54 (64%)
Frame = +3
Query: 39 ATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 200
AT L LVLDEAD +LDMGF +I +II + RQT ++SAT EV+++
Sbjct: 230 ATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSATVSDEVRQI 283
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
ILV +DV+ARG+D + V+ P+ E YIHR+G
Sbjct: 391 ILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLG 427
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +1
Query: 463 NSTRKR*SSVS-VQGRCASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
NS R S++S + IL+ATDVA+RGLD+ + VIN+D P DY+HR+G
Sbjct: 336 NSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVG 391
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = +3
Query: 54 RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 206
R +LVLDEADR+LD+GF+ ++R I + + RQTL++SAT ++ L E
Sbjct: 203 RTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLE 253
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 302 EKENKLNVLLQEIGQSQEPGAKT-IIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQER 478
+K+ K L+ + Q ++ G ++ +IFV T R + +S + + MH +Q R
Sbjct: 282 DKDAKELYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMR 341
Query: 479 DEVLYQFKEG 508
L +FK G
Sbjct: 342 LSALSKFKSG 351
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/68 (32%), Positives = 45/68 (66%)
Frame = +2
Query: 302 EKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERD 481
+++NK+ V+ +I + + G +TIIFV+TK A+ + + + G+ +HG+ T+ +RD
Sbjct: 322 KEQNKIEVIKDQIMELGDIG-QTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRD 380
Query: 482 EVLYQFKE 505
+++ +FKE
Sbjct: 381 KIVKEFKE 388
Score = 36.7 bits (81), Expect = 0.016
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSED-------YIHRIGENWTF 642
+L+ATDV ARG D + V+N++ P E Y+HR+G F
Sbjct: 393 VLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRF 441
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/57 (36%), Positives = 35/57 (61%)
Frame = +1
Query: 514 SILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTFKIKRNIICFLYPFK 684
++L++TDVAARGLD ++ +I +D P + +Y+HR+G K + FL P +
Sbjct: 401 AVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGEALLFLQPIE 457
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/55 (40%), Positives = 39/55 (70%)
Frame = +3
Query: 42 TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 206
+ L ++DEAD +LD+GF+ + KII+ + RQ+L++SAT PKEV+++++
Sbjct: 527 SRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQ 581
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
ILV +DV+ARG++ + VI P+ E YIHR+G
Sbjct: 687 ILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLG 723
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/55 (40%), Positives = 38/55 (69%)
Frame = +3
Query: 42 TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 206
+ L ++DEAD +LD+GF + KII+ + RQ+L++SAT PKEV+++++
Sbjct: 480 SRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQ 534
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
ILV +DV+ARG++ + VI P+ E YIHR+G
Sbjct: 640 ILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLG 676
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 50.8 bits (116), Expect = 9e-07
Identities = 23/69 (33%), Positives = 46/69 (66%)
Frame = +3
Query: 33 LQATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDY 212
++ + + L+LDEADR+L+MGF+ Q+ II ++ R+T ++SAT + V++LA+
Sbjct: 160 MEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEGVEELAKAG 219
Query: 213 LGDYIQINI 239
L + +++ +
Sbjct: 220 LRNPVRVEV 228
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/53 (43%), Positives = 29/53 (54%)
Frame = +1
Query: 520 LVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTFKIKRNIICFLYP 678
L+ TDVAARGLD+ GI YV+ +D P + HR G + I FL P
Sbjct: 332 LLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQGRAIVFLLP 384
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +1
Query: 520 LVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
L+ATDVAARGLD+ G++ VIN+ P + Y+HR+G
Sbjct: 466 LIATDVAARGLDIIGVQTVINYACPREIDSYVHRVG 501
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = +3
Query: 39 ATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 206
+ +L L+LDEADR+L GF +I +++ RQT+++SAT +EVK+L +
Sbjct: 308 SVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVK 363
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 362 AKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKE 505
+K IIF TK+ A + G A +HG+ TQ +R + L F++
Sbjct: 413 SKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRK 460
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/43 (53%), Positives = 33/43 (76%)
Frame = +1
Query: 499 QGRCASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
+G C + LV TD+AARGLD+D + +V+ FD+P +S DY+HR G
Sbjct: 420 EGDCPT-LVCTDLAARGLDLD-VDHVVMFDFPKNSIDYLHRTG 460
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Frame = +3
Query: 63 YLVLDEADRMLDMGFEPQIRKIIEQIRP------DR--QTLMWSATWPKEVKKLAED 209
YLVLDEAD M D GF P+IRK + + D+ QT++ +AT V+KL ++
Sbjct: 266 YLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDE 322
Score = 35.5 bits (78), Expect = 0.036
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +2
Query: 308 ENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEV 487
E+KL LLQ + S G+K ++F T + + + V HG+ ++R E
Sbjct: 353 EDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVEN 412
Query: 488 LYQFKE 505
L +FK+
Sbjct: 413 LKKFKD 418
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/53 (41%), Positives = 35/53 (66%)
Frame = +3
Query: 48 LQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 206
L+ Y+V DEAD + MGF Q+ +I+ Q+ +RQTL++SAT P + + A+
Sbjct: 171 LRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAK 223
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/43 (39%), Positives = 30/43 (69%)
Frame = +1
Query: 499 QGRCASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
+ R +L+ TD+AARG+D+ + VIN+D+P + ++HR+G
Sbjct: 318 RARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVG 360
Score = 29.5 bits (63), Expect = 2.4
Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 1/134 (0%)
Frame = +2
Query: 308 ENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYG-WPAVCMHGDKTQQERDE 484
E K + LL + + +T+IFV TK E ++ + P+VC +GD Q R
Sbjct: 254 EEKYSALLYLVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVC-YGDMDQDARKI 312
Query: 485 VLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXXXXTSIVLGRTGRSKSKGTSY 664
+ +F+ + + +GR R+ G +Y
Sbjct: 313 HVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAY 372
Query: 665 AFFTPSNSRQAKDL 706
+F TP + DL
Sbjct: 373 SFVTPEDMPYMLDL 386
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
IL+ TDVAARGLD+ + ++I +D P+ +YIHR+G
Sbjct: 387 ILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVG 423
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/58 (39%), Positives = 37/58 (63%)
Frame = +3
Query: 66 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 239
LV+DEADR+L+ FE + KI++ + RQT ++SAT +VK LA L + +++
Sbjct: 240 LVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDV 297
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = +3
Query: 66 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 206
L+LDEADR+LDMGF+ Q+ II ++ R+T ++SAT + V LA+
Sbjct: 164 LILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAK 210
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 511 ASILVATDVAARGLDVDGIKYV 576
+ +L+ TDVAARGLD+ GI Y+
Sbjct: 293 SGVLLCTDVAARGLDIPGIVYI 314
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/59 (38%), Positives = 38/59 (64%)
Frame = +3
Query: 63 YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 239
+LV+DEADR+L+ FE ++KI+ + RQT ++SAT +V+ LA L + I++
Sbjct: 304 FLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLARVSLTSPVYIDV 362
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/37 (48%), Positives = 28/37 (75%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
IL+ T+VAARGLD + +++ +D P++ DYIHR+G
Sbjct: 453 ILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVG 489
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 47.6 bits (108), Expect = 8e-06
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
+LV+TD+AARG+D+ ++ NFD P + DY+HR G
Sbjct: 394 LLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAG 430
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 47.6 bits (108), Expect = 8e-06
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
+LV+TD+AARG+D+ ++ NFD P + DY+HR G
Sbjct: 237 LLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAG 273
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 47.2 bits (107), Expect = 1e-05
Identities = 17/37 (45%), Positives = 29/37 (78%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
IL+ATD+ ARG+D+ ++ +I++ P+S+E Y+HR G
Sbjct: 555 ILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVHRCG 591
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 48 LQRCTYLVLDEADRMLDMGFEPQIRKIIE 134
L ++ VLDEADRM++ G +++ I++
Sbjct: 354 LHSLSFFVLDEADRMVERGHFRELQSILD 382
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
+ V TD AARG+DV + +VI D+ +S+ D++HRIG
Sbjct: 476 VFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIG 512
Score = 31.9 bits (69), Expect = 0.45
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 54 RCT-YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQ 230
RC Y+V DEAD +L F+ QI ++I +R D K+V +LA+ LG ++
Sbjct: 236 RCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDE----------KQVSRLAKSNLGRPME 285
Query: 231 INIGSLQL 254
I+ Q+
Sbjct: 286 IDASVPQI 293
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 44.4 bits (100), Expect = 8e-05
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
+LVA+D RG+DV G+ VIN+D P ++ +IHR G
Sbjct: 381 VLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAG 417
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 44.4 bits (100), Expect = 8e-05
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +1
Query: 520 LVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
LV TD A+RG+D G+ +V+ FD+P +Y+ R+G
Sbjct: 698 LVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVG 733
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +2
Query: 308 ENKLNVLLQEIGQSQEPGAKTIIF---VETKRKAENISRNIRR 427
+NK LLQ + + P +KTIIF +ET RK ENI + + R
Sbjct: 620 QNKKTALLQIM--EENPVSKTIIFCNKIETCRKVENIFKRVDR 660
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 520 LVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
LVAT+VAARGLD++ ++ +I + P E YIHR G
Sbjct: 400 LVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSG 435
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +3
Query: 63 YLVLDEADRMLDMGFEPQIRKIIEQIRPDR--QTLMWSATWPKEVKKLAEDYL 215
+ VLDEAD ML MGF + I+ ++ QTL++SAT P VK ++ +L
Sbjct: 251 FRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFL 303
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +2
Query: 326 LLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKE 505
L+ +I G +TIIF ETK + +S + + +HG+ Q +R+ L F+
Sbjct: 339 LIPDIISCYSSGGQTIIFAETKVQVSELSGLLD----GSRALHGEIPQSQREVTLAGFRN 394
Query: 506 G 508
G
Sbjct: 395 G 395
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +3
Query: 69 VLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL 248
VLDE D ML GF Q+ +I + + Q L++SAT +EV+K+ + I ++IG+
Sbjct: 265 VLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISREVEKVGGSLAKEIILVSIGNP 323
Query: 249 QLP 257
P
Sbjct: 324 NKP 326
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTFKIKRNIICFL 672
+LV+T V RG+D+ ++ VI FD P++ ++YIH IG K I F+
Sbjct: 411 VLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFV 462
Score = 35.5 bits (78), Expect = 0.036
Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 1/157 (0%)
Frame = +2
Query: 260 NHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRY-GW 436
N + Q+ +K+ KL +L+ + P +++V ++ A+ ++ I G
Sbjct: 327 NKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPA---VVYVSSRVGADLLANAITVVTGV 383
Query: 437 PAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXXXXTS 616
A+ +HG+K +ER +V+ F G V
Sbjct: 384 KALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYI 443
Query: 617 IVLGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 727
V+GR R KGT+ F + DLV+ L+ +
Sbjct: 444 HVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSS 480
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +3
Query: 69 VLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL 248
VLDE D ML GF Q+ +I + + Q L++SAT +EV+K+ + I ++IG+
Sbjct: 128 VLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISREVEKVGGSLAKEIILVSIGNP 186
Query: 249 QLP 257
P
Sbjct: 187 NKP 189
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTFKIKRNIICFL 672
+LV+T V RG+D+ ++ VI FD P++ ++YIH IG K I F+
Sbjct: 274 VLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFV 325
Score = 35.5 bits (78), Expect = 0.036
Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 1/157 (0%)
Frame = +2
Query: 260 NHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRY-GW 436
N + Q+ +K+ KL +L+ + P +++V ++ A+ ++ I G
Sbjct: 190 NKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPA---VVYVSSRVGADLLANAITVVTGV 246
Query: 437 PAVCMHGDKTQQERDEVLYQFKEGXXXXXXXXXXXXXXXXXXVSNMXXXXXXXXXXXXTS 616
A+ +HG+K +ER +V+ F G V
Sbjct: 247 KALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYI 306
Query: 617 IVLGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 727
V+GR R KGT+ F + DLV+ L+ +
Sbjct: 307 HVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSS 343
>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1029
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/75 (26%), Positives = 42/75 (56%)
Frame = +2
Query: 281 VDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGD 460
VD+ + + +K+ LL+E+ + G+K+I+F + + + + R + V + G
Sbjct: 853 VDVEKNWVESSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGT 912
Query: 461 KTQQERDEVLYQFKE 505
+QQ+R++VL +F E
Sbjct: 913 LSQQQREKVLKEFSE 927
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +3
Query: 66 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 239
LVLDEAD +L G+E +R + I Q L+ SAT +V+KL + L + I + +
Sbjct: 204 LVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTL 261
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +1
Query: 544 RGLDVDGIKYVINFDYPNSSEDYIHRIG 627
RG+D + VINFD P S YIHRIG
Sbjct: 398 RGIDFKKVHTVINFDMPQSVTGYIHRIG 425
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 623 LGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVL 718
+GRTGR+ S G+S + +P +D+ S L
Sbjct: 424 IGRTGRAYSSGSSVSLISPDEMEGFEDIKSFL 455
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGENWTFKIKRNII 663
+LV +++ARGLDV V+N + P + Y HR G K ++
Sbjct: 460 VLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVV 508
Score = 35.5 bits (78), Expect = 0.036
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 14/66 (21%)
Frame = +3
Query: 57 CTYLVLDEADRMLDMGFEPQIRKIIEQI--------------RPDRQTLMWSATWPKEVK 194
C +LVLDE D +L F I +I+E + R +RQT++ SAT P V
Sbjct: 268 CRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVI 327
Query: 195 KLAEDY 212
+ A+ +
Sbjct: 328 RAAKSW 333
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 371 IIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEG 508
I F+ R+ +++ + G + MHGD + R VL +FK G
Sbjct: 411 IAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNG 456
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
++VAT GLD + VI+F P S E+Y+ IG
Sbjct: 539 VVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIG 575
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 32.3 bits (70), Expect = 0.34
Identities = 19/77 (24%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +2
Query: 281 VDICQEHEKENKLNVLLQEIGQSQEPGA--KTIIFVETKRKAENISRNIRRYGWPAVCMH 454
VD+ + ++ +K++ LL+ + + ++ G+ K+I+F + + + +RR G+ +
Sbjct: 1099 VDVVKNWKESSKVSELLKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFD 1158
Query: 455 GDKTQQERDEVLYQFKE 505
G Q+ R++VL +F E
Sbjct: 1159 GKLAQKGREKVLKEFNE 1175
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 31.1 bits (67), Expect = 0.78
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 463 NSTRKR*SSVSVQGR--CASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
N TRK+ + + R +I+VAT + GLDV VI FD ++ +I G
Sbjct: 429 NQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRG 485
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 499 QGRCASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
Q + ++LVAT V GLD+ VI +D P + +I G
Sbjct: 568 QSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRG 610
>At4g10090.1 68417.m01651 expressed protein
Length = 262
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 511 ASILVATDVAARGL--DVDGIKYVINFDYPNSSEDYIHRIGENWTFKIKRNIICFLYP 678
A +++ + A GL DV G V+N NS +N+ F+IK N I + YP
Sbjct: 201 ADVVIKAEPLASGLANDVHGQLTVLNKGISNSGRGSSRNKLQNFQFRIKENGIDYFYP 258
>At3g58460.1 68416.m06516 rhomboid family protein /
ubiquitin-associated (UBA)/TS-N domain-containing
protein contains Pfam profiles PF01694: Rhomboid family,
PF00627: UBA/TS-N domain
Length = 403
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -2
Query: 124 FLICGSNPISNIRSASSRTKYVHRCKLVACSPGDP 20
FL+ GS+ + I SAS + ++ R K + C+ G+P
Sbjct: 214 FLMPGSSFFTTIESASWMSSFIRRPKFIMCTGGNP 248
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 508 CASILVATDVAARGLDVDGIKYVINFDY 591
C +V+T++A L VDG+ YVI+ Y
Sbjct: 273 CRRFIVSTNIAETSLTVDGVVYVIDSGY 300
>At4g16680.1 68417.m02519 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 883
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDY 591
+++AT++A L +DG+KYVI+ Y
Sbjct: 492 VVLATNIAETSLTIDGVKYVIDPGY 516
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 520 LVATDVAARGLDVDGIKYVINFDY 591
+VAT++A L VDGI YVI+ Y
Sbjct: 804 IVATNIAETSLTVDGIYYVIDTGY 827
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVIN 582
+++AT++A L +DGIKYV++
Sbjct: 740 VVLATNIAETSLTIDGIKYVVD 761
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVIN 582
+++AT++A L +DGIKYV++
Sbjct: 674 VVLATNIAETSLTIDGIKYVVD 695
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 514 SILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
++LVAT VA GLD+ V+ FD + YI G
Sbjct: 725 TLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRG 762
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/62 (19%), Positives = 31/62 (50%)
Frame = +3
Query: 33 LQATNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDY 212
L+ ++ + LV+DE + G+ ++ I + I QT++++ ++ + + +
Sbjct: 263 LKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSFSASIIPAVQSF 322
Query: 213 LG 218
LG
Sbjct: 323 LG 324
>At1g15820.1 68414.m01898 chlorophyll A-B binding protein,
chloroplast (LHCB6) nearly identical to Lhcb6 protein
[Arabidopsis thaliana] GI:4741960; contains Pfam profile
PF00504: Chlorophyll A-B binding protein
Length = 258
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 87 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGD 221
++L MG+ + ++ ++ PD Q++ W+ W K + A +Y GD
Sbjct: 149 QLLLMGWV-ESKRWVDFFNPDSQSVEWATPWSKTAENFA-NYTGD 191
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 514 SILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
+++VAT + GLD+ + VI FD S I R+G
Sbjct: 529 NVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMG 566
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVIN 582
++VAT+VA L + GIKYV++
Sbjct: 675 VVVATNVAETSLTIPGIKYVVD 696
>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1132
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 592 PNSSEDYIHRIGENWTFKI 648
P+S +D + RIG NW KI
Sbjct: 274 PSSEKDIVKRIGNNWARKI 292
>At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 620
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
I+VAT G+D ++ V +F+ P S E + G
Sbjct: 216 IIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESG 252
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 627
I+VAT G+D ++ V +F+ P S E + G
Sbjct: 309 IIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESG 345
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 48 LQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 152
L++ LVLDEA +D + I+KII Q DR
Sbjct: 938 LKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 972
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 48 LQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 152
L++ LVLDEA +D + I+KII Q DR
Sbjct: 1391 LKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 1425
>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00575: S1 RNA binding domain
Length = 1168
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 517 ILVATDVAARGLDVDGIKYVIN 582
++VAT++A L +DGI YV++
Sbjct: 785 VVVATNIAEASLTIDGIYYVVD 806
>At1g74790.1 68414.m08665 expressed protein contains similarity to
hedgehog-interacting protein GI:4868122 from [Mus
musculus]
Length = 695
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 555 IKPSSCNISCYKNTSTPSLN*YRTSSLS 472
++PS CN++C K ST N +SS S
Sbjct: 635 VRPSRCNLTCSKENSTARRNPGTSSSPS 662
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,114,859
Number of Sequences: 28952
Number of extensions: 334635
Number of successful extensions: 1162
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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