Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021023
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23460.1 68417.m03381 beta-adaptin, putative strong similarit...   128   3e-30
At4g11380.1 68417.m01835 beta-adaptin, putative strong similarit...   128   3e-30
At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9...    54   1e-07
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ...    37   0.013
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ...    37   0.013
At1g73430.1 68414.m08500 sec34-like family protein contains Pfam...    29   3.3  
At5g44330.1 68418.m05428 male sterility MS5 family protein simil...    28   5.8  
At1g50240.1 68414.m05633 armadillo/beta-catenin repeat family pr...    27   7.7  

>At4g23460.1 68417.m03381 beta-adaptin, putative strong similarity
           to SP|Q10567 Adapter-related protein complex 1 beta 1
           subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
           [Drosophila melanogaster] GI:434902; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 893

 Score =  128 bits (309), Expect = 3e-30
 Identities = 59/81 (72%), Positives = 74/81 (91%)
 Frame = +1

Query: 259 MEMVSADTELVSTLSRKLAPPLVTLLSAEPEVQYVALRNINLVVQKRPDILKHEMKVFFV 438
           ME++++ T+++  L +K+APPLVTLLSAEPE+QYVALRNINL+VQKRP IL HE+KVFF 
Sbjct: 268 MELITS-TDVIRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFC 326

Query: 439 KYNDPIYVKLEKLDIMIRLAS 501
           KYNDPIYVK+EKL+IMI+LAS
Sbjct: 327 KYNDPIYVKMEKLEIMIKLAS 347



 Score =  113 bits (272), Expect = 9e-26
 Identities = 56/84 (66%), Positives = 66/84 (78%)
 Frame = +2

Query: 2   AALSEINEASVSGRPLVEMNAPTINKLLTALNECTEWGQVFILDALSNYSPRDAREAHSI 181
           AAL+EI E S S  P+ E+N+  + KLLTALNECTEWGQVFILDALS Y   D REA +I
Sbjct: 184 AALAEIQENSTS--PIFEINSTILTKLLTALNECTEWGQVFILDALSRYKASDPREAENI 241

Query: 182 CERITPRLAHANAAVVLSAVKVLM 253
            ER+TPRL HAN AVVLSAVK+++
Sbjct: 242 VERVTPRLQHANCAVVLSAVKMIL 265



 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 32/39 (82%), Positives = 35/39 (89%)
 Frame = +3

Query: 507 HIAQVLGELKEYATEVDVDFVRKAVRAIGRCAIKVEPSA 623
           +I QVL E KEYATEVDVDFVRKAVRAIGRCAIK+E +A
Sbjct: 350 NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA 388


>At4g11380.1 68417.m01835 beta-adaptin, putative strong similarity
           to SP|Q10567 Adapter-related protein complex 1 beta 1
           subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
           [Drosophila melanogaster] GI:434902; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 894

 Score =  128 bits (309), Expect = 3e-30
 Identities = 59/81 (72%), Positives = 74/81 (91%)
 Frame = +1

Query: 259 MEMVSADTELVSTLSRKLAPPLVTLLSAEPEVQYVALRNINLVVQKRPDILKHEMKVFFV 438
           ME++++ T+++  L +K+APPLVTLLSAEPE+QYVALRNINL+VQKRP IL HE+KVFF 
Sbjct: 268 MELITS-TDVIRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFC 326

Query: 439 KYNDPIYVKLEKLDIMIRLAS 501
           KYNDPIYVK+EKL+IMI+LAS
Sbjct: 327 KYNDPIYVKMEKLEIMIKLAS 347



 Score =  115 bits (276), Expect = 3e-26
 Identities = 57/84 (67%), Positives = 67/84 (79%)
 Frame = +2

Query: 2   AALSEINEASVSGRPLVEMNAPTINKLLTALNECTEWGQVFILDALSNYSPRDAREAHSI 181
           AAL+EI E S S  P+ E+N+ T+ KLLTALNECTEWGQVFILDALS Y   D REA +I
Sbjct: 184 AALAEIQENSSS--PIFEINSTTLTKLLTALNECTEWGQVFILDALSKYKAADPREAENI 241

Query: 182 CERITPRLAHANAAVVLSAVKVLM 253
            ER+TPRL HAN AVVLSAVK+++
Sbjct: 242 VERVTPRLQHANCAVVLSAVKMIL 265



 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 32/39 (82%), Positives = 35/39 (89%)
 Frame = +3

Query: 507 HIAQVLGELKEYATEVDVDFVRKAVRAIGRCAIKVEPSA 623
           +I QVL E KEYATEVDVDFVRKAVRAIGRCAIK+E +A
Sbjct: 350 NIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAA 388


>At5g11490.1 68418.m01341 adaptin family protein similar to
           SP|Q9WV76 Adapter-related protein complex 4 beta 1
           subunit (Beta subunit of AP- 4) {Mus musculus},
           beta-adaptin Drosophila 1 {Drosophila melanogaster}
           GI:434902; contains Pfam profile: PF01602 Adaptin N
           terminal region
          Length = 841

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 25/84 (29%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
 Frame = +1

Query: 259 MEMVSADTELVSTLSRKLAPPLVTLLSA-EPEVQYVALRNINLVVQKRPDILKHEMKVFF 435
           +++  + T++   +  ++  PL+TL+S+  PE  Y  L +++L+V + P I   + K F+
Sbjct: 286 LQLTLSMTDVHQQVYERIKSPLLTLVSSGSPEQSYAILSHLHLLVVRAPFIFAADYKHFY 345

Query: 436 VKYNDPIYVKLEKLDIMIRLASQA 507
            +YN+P YVK  KL+++  +A+++
Sbjct: 346 CQYNEPSYVKKLKLEMLTAVANES 369



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 25/66 (37%), Positives = 34/66 (51%)
 Frame = +2

Query: 56  MNAPTINKLLTALNECTEWGQVFILDALSNYSPRDAREAHSICERITPRLAHANAAVVLS 235
           ++ P I   L  + E  EW Q  IL+    Y P D+ +   I   +  RL HAN AVVL+
Sbjct: 221 LSKPVIYYFLNRIKEFNEWAQCLILELAVKYVPSDSNDIFDIMNLLEDRLQHANGAVVLA 280

Query: 236 AVKVLM 253
            VKV +
Sbjct: 281 TVKVFL 286



 Score = 34.3 bits (75), Expect = 0.067
 Identities = 13/35 (37%), Positives = 25/35 (71%)
 Frame = +3

Query: 504 SHIAQVLGELKEYATEVDVDFVRKAVRAIGRCAIK 608
           S+  +++ EL EYA  VD+   R+++RA+G+ A++
Sbjct: 369 SNTYEIVTELCEYAANVDIAIARESIRAVGKIALQ 403


>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
           complex beta3A subunit, Homo sapiens, SP|O00203;
           contains Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 19/69 (27%), Positives = 37/69 (53%)
 Frame = +1

Query: 304 RKLAPPLVTLLSAEPEVQYVALRNINLVVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDI 483
           +K+  PL+ LL +    +YV L NI +  +  P +     + FF+  +D   VK  KL++
Sbjct: 244 KKIVKPLLFLLRSSSASKYVVLCNILVFAKAVPSLFAPHFENFFICSSDAYQVKAYKLEM 303

Query: 484 MIRLASQAT 510
           +  +A+ ++
Sbjct: 304 LSLIATTSS 312


>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
           complex beta3A subunit, Homo sapiens, SP|O00203;
           contains Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 19/69 (27%), Positives = 37/69 (53%)
 Frame = +1

Query: 304 RKLAPPLVTLLSAEPEVQYVALRNINLVVQKRPDILKHEMKVFFVKYNDPIYVKLEKLDI 483
           +K+  PL+ LL +    +YV L NI +  +  P +     + FF+  +D   VK  KL++
Sbjct: 244 KKIVKPLLFLLRSSSASKYVVLCNILVFAKAVPSLFAPHFENFFICSSDAYQVKAYKLEM 303

Query: 484 MIRLASQAT 510
           +  +A+ ++
Sbjct: 304 LSLIATTSS 312


>At1g73430.1 68414.m08500 sec34-like family protein contains Pfam
           PF04136: Sec34-like family profile; similar to Conserved
           oligomeric Golgi complex component 3 (Vesicle docking
           protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) [Homo
           sapiens]
          Length = 784

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 20  NEASVSGRPLVEMNAPTINKLLTALNE-CTEWGQVFILDALSNYSPRD 160
           ++++    PL  +  PT+ ++L  +NE  T   + +I D ++NY+P D
Sbjct: 428 DQSARQSEPLAGLR-PTLQRILADVNERLTFRARTYIRDEIANYTPSD 474


>At5g44330.1 68418.m05428 male sterility MS5 family protein similar
           to male sterility MS5 [Arabidopsis thaliana] GI:3859112;
           contains Pfam profile PF00515 TPR Domain
          Length = 469

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +1

Query: 250 DELMEMVSADTELVSTLSRKLAPPLV 327
           DEL + +S+D + +++ +RKL P L+
Sbjct: 396 DELHQFISSDADCMTSKARKLCPELI 421


>At1g50240.1 68414.m05633 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 1021

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 513 AQVLGELKEYATEVDVDFVRKAVRAIG 593
           A VL  LKEY T VD +   KA  A+G
Sbjct: 809 ASVLQPLKEYLTHVDPNIRAKACSALG 835


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,716,497
Number of Sequences: 28952
Number of extensions: 207364
Number of successful extensions: 568
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)