Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021020
(832 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 130 8e-31
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 128 3e-30
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 125 4e-29
At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING ... 38 0.006
At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING ... 38 0.006
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 36 0.033
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 35 0.076
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 34 0.10
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 32 0.41
At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein ... 32 0.41
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 32 0.54
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 31 0.94
At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger ... 31 1.2
At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger ... 31 1.2
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ... 31 1.2
At1g29600.1 68414.m03619 zinc finger (CCCH-type) family protein ... 31 1.2
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 30 2.2
At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identica... 30 2.2
At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein ... 29 2.9
At1g48195.1 68414.m05380 zinc finger (CCCH-type) family protein ... 29 2.9
At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit... 29 3.8
At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit... 29 3.8
At4g07510.1 68417.m01165 hypothetical protein 29 3.8
At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit... 29 3.8
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 29 5.0
At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein ... 28 6.6
At2g42820.1 68415.m05301 abscisic acid-responsive HVA22 family p... 28 6.6
At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ... 28 6.6
At2g02160.1 68415.m00152 zinc finger (CCCH-type) family protein ... 28 6.6
At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein ... 28 6.6
At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein ... 28 6.6
At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 8.7
At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein ... 28 8.7
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 28 8.7
At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ... 28 8.7
At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein ... 28 8.7
At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein ... 28 8.7
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 130 bits (315), Expect = 8e-31
Identities = 55/79 (69%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Frame = +3
Query: 258 KECKICSRPFTVFRWCPGARMRFKKTEICQTCSKLKNVCQTCLLDLEYGLPIQVRDAALK 437
KECKIC+RPFTVFRW PG R+KKTEICQTC KLKNVCQ CLLDLEYGLP+QVRD AL
Sbjct: 42 KECKICTRPFTVFRWRPGRDARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALN 101
Query: 438 V--QDDLPRNEVNKEYYIQ 488
+ D +P+++VN+EY+ +
Sbjct: 102 ISTHDSIPKSDVNREYFAE 120
Score = 106 bits (255), Expect = 2e-23
Identities = 45/67 (67%), Positives = 54/67 (80%)
Frame = +2
Query: 557 SDLLVRLARTAPYYKRNRPHVCSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYY 736
+D +++L RT PYYKRNR HVCSF+++GEC RG ECPYRHE P + L+ QNIKDRYY
Sbjct: 142 NDTILKLQRTTPYYKRNRAHVCSFFIRGECTRGAECPYRHEMPETGE--LSQQNIKDRYY 199
Query: 737 GVNDPVA 757
GVNDPVA
Sbjct: 200 GVNDPVA 206
Score = 53.6 bits (123), Expect = 2e-07
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +1
Query: 160 YNRQNWEDADFPILCQTCLGDNPYIRMTKEK*AKNVK 270
+ WE +DFPI+C++CLGDNPY+RMTK K K
Sbjct: 9 HEADGWERSDFPIICESCLGDNPYVRMTKANYDKECK 45
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 128 bits (310), Expect = 3e-30
Identities = 53/79 (67%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Frame = +3
Query: 258 KECKICSRPFTVFRWCPGARMRFKKTEICQTCSKLKNVCQTCLLDLEYGLPIQVRDAALK 437
KECKIC+RPFTVFRW PG R+KKTE+CQTC KLKNVCQ CLLDLEYGLP+QVRD AL
Sbjct: 42 KECKICTRPFTVFRWRPGRDARYKKTEVCQTCCKLKNVCQVCLLDLEYGLPVQVRDTALN 101
Query: 438 V--QDDLPRNEVNKEYYIQ 488
+ D +P+++VN+E++ +
Sbjct: 102 ISTHDSIPKSDVNREFFAE 120
Score = 104 bits (250), Expect = 6e-23
Identities = 44/67 (65%), Positives = 53/67 (79%)
Frame = +2
Query: 557 SDLLVRLARTAPYYKRNRPHVCSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYY 736
+D + L RT PYYKRNR H+CSF+++GEC RG+ECPYRHE P + L+ QNIKDRYY
Sbjct: 142 NDTIRMLQRTTPYYKRNRAHICSFFIRGECTRGDECPYRHEMPETGE--LSQQNIKDRYY 199
Query: 737 GVNDPVA 757
GVNDPVA
Sbjct: 200 GVNDPVA 206
Score = 53.6 bits (123), Expect = 2e-07
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +1
Query: 160 YNRQNWEDADFPILCQTCLGDNPYIRMTKEK*AKNVK 270
+ WE +DFPI+C++CLGDNPY+RMTK K K
Sbjct: 9 HEADGWERSDFPIICESCLGDNPYVRMTKANYDKECK 45
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 125 bits (301), Expect = 4e-29
Identities = 54/77 (70%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Frame = +3
Query: 258 KECKICSRPFTVFRWCPGARMRFKKTEICQTCSKLKNVCQTCLLDLEYGLPIQVRDAALK 437
KECKICSRPFT FRW PG RFKKTEICQTCSKLKNVCQ CLLDL +GLP+QVRD+AL
Sbjct: 39 KECKICSRPFTAFRWRPGRNARFKKTEICQTCSKLKNVCQVCLLDLGFGLPVQVRDSALN 98
Query: 438 VQD--DLPRNEVNKEYY 482
+ +P + VN+EY+
Sbjct: 99 INSHYSVPMSHVNREYF 115
Score = 85.4 bits (202), Expect = 4e-17
Identities = 35/67 (52%), Positives = 49/67 (73%)
Frame = +2
Query: 557 SDLLVRLARTAPYYKRNRPHVCSFWVKGECRRGEECPYRHEKPTDPDDPLADQNIKDRYY 736
+D +++L R P Y++NRP +CSF+ G+C+RG EC +RHE P + L+ QNI+DRYY
Sbjct: 139 NDTILKLQRRTPSYEKNRPKICSFYTIGQCKRGAECSFRHEMPETGE--LSHQNIRDRYY 196
Query: 737 GVNDPVA 757
VNDPVA
Sbjct: 197 SVNDPVA 203
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +1
Query: 148 STNTYNRQNWEDADFPILCQTCLGDNPYIRMTKEK*AKNVK 270
S + WE ADFPI C++C GDNPY+RMT+ K K
Sbjct: 2 SHRDHGADGWESADFPITCESCFGDNPYMRMTRADYDKECK 42
>At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 497 ESAVNSDPTQPTNSLKSKGSSDLLVRLARTAPYYKRNRPHVCSFWVKGECRRGEECPYRH 676
ES S T P+ L+ +G ++ + + + R P +CSF G+C RG +CP+ H
Sbjct: 67 ESLDRSISTTPSRHLQQQGDNNDGDKSSNVYCIHPREYP-ICSFAAAGDCPRGNQCPHMH 125
Score = 33.1 bits (72), Expect = 0.23
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 617 VCSFWVKGECRRGEECPYRHEKPTDPDD 700
+C F+V G C +GE C + H+ P++
Sbjct: 6 LCKFFVHGSCLKGENCEFSHDSKDPPNN 33
>At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 497 ESAVNSDPTQPTNSLKSKGSSDLLVRLARTAPYYKRNRPHVCSFWVKGECRRGEECPYRH 676
ES S T P+ L+ +G ++ + + + R P +CSF G+C RG +CP+ H
Sbjct: 67 ESLDRSISTTPSRHLQQQGDNNDGDKSSNVYCIHPREYP-ICSFAAAGDCPRGNQCPHMH 125
Score = 33.1 bits (72), Expect = 0.23
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 617 VCSFWVKGECRRGEECPYRHEKPTDPDD 700
+C F+V G C +GE C + H+ P++
Sbjct: 6 LCKFFVHGSCLKGENCEFSHDSKDPPNN 33
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 35.9 bits (79), Expect = 0.033
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 608 RPHVCSFWVKGECRRGEECPYRH 676
R VC +W G+C+RGE+C + H
Sbjct: 91 RKWVCKYWKDGKCKRGEQCQFLH 113
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 34.7 bits (76), Expect = 0.076
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 617 VCSFWVKGECRRGEECPYRH 676
VC+FW G C++GE+C + H
Sbjct: 150 VCNFWKDGNCKKGEKCQFLH 169
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 34.3 bits (75), Expect = 0.10
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 617 VCSFWVKGECRRGEECPYRH 676
VC+FWV G C G++C Y H
Sbjct: 114 VCNFWVDGNCTYGDKCRYLH 133
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 32.3 bits (70), Expect = 0.41
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 617 VCSFWVKGECRRGEECPYRH 676
+C FWV G C G++C Y H
Sbjct: 107 LCKFWVDGNCPYGDKCRYLH 126
>At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein
weak similarity to Nucleoporin NUP42 (Nuclear pore
protein NUP42) (Swiss-Prot:P49686) [Saccharomyces
cerevisiae]; contains Pfam profile PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 32.3 bits (70), Expect = 0.41
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 608 RPHVCSFWVKGECRRGEECPYRHEKPTDPDDP 703
R +C + +G CR GE C + H + P++P
Sbjct: 2 RKELCRNFQRGSCRYGENCRFLHPQQAKPNNP 33
>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
to CREB-binding protein GB:AAC51770 GI:2443859 from
[Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
profile; contains Pfam PF00569: Zinc finger, ZZ type
domain; identical to histone acetyltransferase HAC4
(GI:14794966) {Arabidopsis thaliana}
Length = 1456
Score = 31.9 bits (69), Expect = 0.54
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 246 RKIGKECKICSRPFTVFRWCPGARMRFKKTEICQTCSKLKNVCQTCLLDLEY 401
RKI K C P +R+C G RM + C++ S C+TC+ EY
Sbjct: 452 RKIVKHIDCCKVPNCKYRYCLGTRMWLDHFKQCKSIS-----CRTCVAVREY 498
>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 536
Score = 31.1 bits (67), Expect = 0.94
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 515 DP-TQP--TNSLKSKGSSDLLVRLARTAPYYKRNRPHVCSFWVKGECRRGEECPYRH 676
DP T P +N S+ L +R +R +P +C ++ KG C+ G C Y H
Sbjct: 124 DPLTSPEFSNGFFSQERQCLPLRTSRRSPSLPEFPVKICHYFNKGFCKHGNNCRYFH 180
>At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger
(CCCH-type) family protein contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF04677: Protein similar to CwfJ C-terminus 1,
PF04676: Protein similar to CwfJ C-terminus 2
Length = 593
Score = 30.7 bits (66), Expect = 1.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 632 VKGECRRGEECPYRHE 679
+KG+C +G EC Y+HE
Sbjct: 343 IKGKCEKGPECSYKHE 358
>At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger
(CCCH-type) family protein contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF04677: Protein similar to CwfJ C-terminus 1,
PF04676: Protein similar to CwfJ C-terminus 2
Length = 404
Score = 30.7 bits (66), Expect = 1.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 632 VKGECRRGEECPYRHE 679
+KG+C +G EC Y+HE
Sbjct: 154 IKGKCEKGPECSYKHE 169
>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
YT521-B-like family protein low similarity to cleavage
and polyadenylation specificity factor 30 kDa subunit
[Bos taurus] GI:2327052; contains Pfam profiles PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar),
PF04146: YT521-B-like family; supporting cDNA
gi|24415581|gb|AY140901.1|
Length = 678
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +2
Query: 620 CSFWVKGECRRGEECPYRHEKPTDPDDPLAD-----QNIKDRYYGVN 745
C+ + G C G +C YRH K P P+ + Q + YG N
Sbjct: 120 CNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTTYNYGTN 166
Score = 30.3 bits (65), Expect = 1.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 608 RPHVCSFWVKGECRRGEECPYRHE 679
R VC W++G C +G+ C + H+
Sbjct: 62 RQTVCRHWLRGLCMKGDACGFLHQ 85
>At1g29600.1 68414.m03619 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 287
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 638 GECRRGEECPYRHEKPTDPD 697
G C+RG CP+ H K D D
Sbjct: 175 GACKRGSNCPFNHPKERDGD 194
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 29.9 bits (64), Expect = 2.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 617 VCSFWVKGECRRGEECPYRHEK 682
VC + +GEC RG+ C + H++
Sbjct: 135 VCRAFQRGECTRGDSCKFSHDE 156
Score = 29.9 bits (64), Expect = 2.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 617 VCSFWVKGECRRGEECPYRHEK 682
VC + +GEC RG+ C + H++
Sbjct: 185 VCRAFQRGECTRGDSCKFSHDE 206
>At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identical
to floral homeotic protein HUA1 [Arabidopsis thaliana]
gi|16797661|gb|AAK01470
Length = 524
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 617 VCSFWVK-GECRRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVAEN 763
+C+F++K G+C+ G C + H P D P + Q+I ++P A N
Sbjct: 273 MCTFYMKTGKCKFGLSCKFHH--PKDIQLPSSSQDIGSSVGLTSEPDATN 320
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 584 TAPYYKRNRPHVCSFWVK-GECRRGEECPYRH 676
+A Y +R C +++K GEC+ GE C + H
Sbjct: 414 SATYPQRPGQSECDYYMKTGECKFGERCKFHH 445
>At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 453
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 521 TQPTNSLKSK--GSSDLLVRLARTAPYYKRNRPHVCSFWVK-GECRRGEECPYRHEK 682
+ P ++K++ SS V + T+ ++ + C F++ G C+ G++C Y H K
Sbjct: 232 SNPIYNMKTQLDSSSSASVAVTVTSHHHSFSERAECRFFMNTGTCKYGDDCKYSHPK 288
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 575 LARTAPYYKRNRPHVCSFWVK-GECRRGEECPYRH 676
+ +++PY R C F+++ G+C G C Y H
Sbjct: 35 MEQSSPYPDRPGERDCQFFLRTGQCGYGNSCRYNH 69
>At1g48195.1 68414.m05380 zinc finger (CCCH-type) family protein
contains Pfam profile PF00642: Zinc finger
C-x8-C-x5-C-x3-H type
Length = 82
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 620 CSFWVK-GECRRGEECPYRHEKPTDPDDPLADQNIK 724
CS++++ G C + C Y H K P +P N K
Sbjct: 15 CSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDK 50
>At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit,
putative strong similarity to U2 snRNP auxiliary factor,
small subunit [Oryza sativa] GI:3850816
Length = 283
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +2
Query: 620 CSFWVK-GECRRGEECPYRHEKPT 688
C F+ K G CR G+ C H +PT
Sbjct: 18 CPFYFKIGACRHGDRCSRLHNRPT 41
>At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit,
putative strong similarity to U2 snRNP auxiliary factor,
small subunit [Oryza sativa] GI:3850816
Length = 283
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +2
Query: 620 CSFWVK-GECRRGEECPYRHEKPT 688
C F+ K G CR G+ C H +PT
Sbjct: 18 CPFYFKIGACRHGDRCSRLHNRPT 41
>At4g07510.1 68417.m01165 hypothetical protein
Length = 312
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 127 HAMATSKSTNTYNRQNWEDADFPILCQ 207
H + T K T T + NW+D +LCQ
Sbjct: 198 HTLWTRKFTRTREKFNWKDLSLLVLCQ 224
>At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit,
putative Strong similarity to gb|Y18349 U2 snRNP
auxiliary factor, small subunit from Oryza sativa. ESTs
gb|AA586295 and gb|AA597332 come from this gene
Length = 296
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +2
Query: 620 CSFWVK-GECRRGEECPYRHEKPT 688
C F+ K G CR G+ C H +PT
Sbjct: 18 CPFYFKIGACRHGDRCSRLHNRPT 41
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 569 VRLARTAPYYKRNRP-HVCSFWVKGECRRGEECPYRHE 679
V+ + P + +P C ++KG C G++C + H+
Sbjct: 338 VKKLKLKPVAPKPKPIKYCRHYLKGRCHEGDKCKFSHD 375
>At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 468
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 533 NSLKSKGSSDLLVRLARTAPYYKRNRPHVCSFWVK-GECRRGEECPYRHEK 682
N + + S + VR T Y +R C F++K G C+ G C + H K
Sbjct: 69 NHPRDRASVEATVRA--TGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPK 117
>At2g42820.1 68415.m05301 abscisic acid-responsive HVA22 family
protein contains Pfam profile PF03134: TB2/DP1, HVA22
family
Length = 158
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 796 VEQALQQHDA*VLSYWIIYTIIPVFNVLIS*WIIRICWL 680
+E D L+YWIIY++I +F +S W + + WL
Sbjct: 32 IESPTMLDDQQWLTYWIIYSLITIFE--LSVWRV-LAWL 67
>At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 716
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 620 CSFWVKGECRRGEECPYRH 676
C + KG CRRG+ C Y H
Sbjct: 307 CPDFRKGACRRGDMCEYAH 325
>At2g02160.1 68415.m00152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 669
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 596 YKRNRPHVCSFWVKGECRRGEECPYRH 676
Y R P C +W+ G C +C +RH
Sbjct: 58 YARMNPRDCYYWLNGNC-LNPKCGFRH 83
>At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Frame = +2
Query: 575 LARTAPYYKRNRPHV-----CSFWVK-GECRRGEECPYRHEKPTDPDDPL 706
L + YYK P C +++K G C+ G C Y H K + P+
Sbjct: 76 LPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGAQPV 125
>At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Frame = +2
Query: 575 LARTAPYYKRNRPHV-----CSFWVK-GECRRGEECPYRHEKPTDPDDPL 706
L + YYK P C +++K G C+ G C Y H K + P+
Sbjct: 76 LPQDVAYYKEELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGAQPV 125
>At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to flavanone 3-hydroxylase
[Persea americana][GI:727410]; contains PF03171
2OG-Fe(II) oxygenase superfamily domain
Length = 341
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 546 LKDRPICWCG*LEQLHIIRGIDRTCARFGSKENVDEGKNVRIV 674
L+D P+ ++ +I+ I + CARFG + ++ G N +I+
Sbjct: 35 LEDFPLIDLSSTDRSFLIQQIHQACARFGFFQVINHGVNKQII 77
>At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 456
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 620 CSFWVK-GECRRGEECPYRHEKPTDPDDPLADQ 715
CS++++ G+C+ G C Y H P P Q
Sbjct: 142 CSYFMRTGQCKFGSTCRYHHPVPPGVQAPSQQQ 174
>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1230
Score = 27.9 bits (59), Expect = 8.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 617 VCSFWVKGECRRGEECPYRH 676
+C F+ G C+RG C + H
Sbjct: 1210 ICKFYESGYCKRGASCSFWH 1229
>At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 448
Score = 27.9 bits (59), Expect = 8.7
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 620 CSFWVK-GECRRGEECPYRHEKPT 688
C ++++ G C+ G EC + H PT
Sbjct: 210 CPYYMRNGSCKYGAECKFNHPDPT 233
>At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 809
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Frame = +2
Query: 491 LGESAVNSDPTQPTNSLKSKGSSDLLVRLARTAPYYKRNRPHVCSFWVK-GECRRGEECP 667
+GE +D + TN SSD ++ +P++K + +CS++ + C G EC
Sbjct: 51 VGEKRKRADEDEKTNL----ESSD--TKITTPSPWWKTS---LCSYFRREASCSHGNECK 101
Query: 668 YRH------EKPTDPDDPLADQNIK 724
Y H KP + DP +++ K
Sbjct: 102 YAHGEAELRMKPDNTWDPTSERGKK 126
>At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 315
Score = 27.9 bits (59), Expect = 8.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 620 CSFWVKGECRRGEECPYRH 676
C + KG CRRG+ C + H
Sbjct: 136 CPEFRKGSCRRGDSCEFSH 154
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,071,030
Number of Sequences: 28952
Number of extensions: 393603
Number of successful extensions: 1085
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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