Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021016
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g41900.1 68414.m04840 myosin heavy chain-related similar to M...    30   1.5  
At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein ...    29   2.6  
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea...    28   6.1  
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi...    28   8.1  

>At1g41900.1 68414.m04840 myosin heavy chain-related similar to
           Myosin heavy chain, skeletal muscle, extraocular
           (MyHC-eo) (SP:Q9UKX3)  {Homo sapiens}
          Length = 442

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 359 TSTPIEPVNQGSRIRNVPIKYIPVLENGSGTPARKPRIHTPVRP 490
           ++ P++P+ + SRI  VP   +P++   S + +  P I    RP
Sbjct: 184 SAAPLDPIKEVSRIEPVPQADLPIVHPDSSSTSELPLIRRMRRP 227


>At2g41940.1 68415.m05188 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 257

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 630 CHICQENFKTTISKTMHPS*SRRSRQHCNR 719
           CH C  NF T+ +   H +  +R RQH  R
Sbjct: 97  CHYCFRNFPTSQALGGHQNAHKRERQHAKR 126


>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
           [Homo sapiens]
          Length = 343

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 296 NGKNRKTVRYVPIQLEAGHPS 358
           NGKNR +    PI L +GHPS
Sbjct: 34  NGKNRTSSLEAPIMLLSGHPS 54


>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 551

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 293 KNGKNRKTVRYVPIQLEAGHPSTSTPIEPVNQGSRIRNVPIKYIP 427
           KNGK +   RY+P  L AG   T++   PV+  ++  + P+   P
Sbjct: 392 KNGKLQSYFRYLP-DLSAGKKKTTS--SPVSSSAKTTSTPVSSSP 433


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,659,046
Number of Sequences: 28952
Number of extensions: 314501
Number of successful extensions: 842
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)