Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0028
(518 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53320.1 68416.m05883 expressed protein 31 0.61
At4g13650.1 68417.m02123 pentatricopeptide (PPR) repeat-containi... 29 1.9
At3g13080.4 68416.m01638 ABC transporter family protein almost i... 29 1.9
At3g13080.3 68416.m01637 ABC transporter family protein almost i... 29 1.9
At3g13080.2 68416.m01636 ABC transporter family protein almost i... 29 1.9
At3g13080.1 68416.m01635 ABC transporter family protein almost i... 29 1.9
At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containi... 28 3.3
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 28 4.3
At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger) fa... 28 4.3
At5g37350.1 68418.m04486 RIO1 family protein similar to extragen... 27 5.7
At4g34890.1 68417.m04948 xanthine dehydrogenase, putative simila... 27 7.6
>At3g53320.1 68416.m05883 expressed protein
Length = 553
Score = 30.7 bits (66), Expect = 0.61
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -1
Query: 410 TRRSSRPPGMRCGSRGFRKLSHLPGPDPGHTRRPK*SASAP----ISNFSHTFSRHS 252
+R SS+P R SRG +P T +PK S+S P IS++S SR S
Sbjct: 354 SRLSSQPLANRSTSRGIMGQPRIPPQQTNKTSKPKLSSSVPTAGSISDYSSESSRAS 410
>At4g13650.1 68417.m02123 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1064
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +1
Query: 154 YVFSFEMLTKMWLVSQPNSVILEIKVDPNAIGQECLEKVC---EKLEIGAEADYFGLRVC 324
YV +MLT+ L+S+ I E+ + P+A+ L C + +EIG A + L +
Sbjct: 832 YVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELE 891
Query: 325 P 327
P
Sbjct: 892 P 892
>At3g13080.4 68416.m01638 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1120
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 133 QDIFVNEFNTRYNCL-SHTRKYLFKKVLLNSLCEMFIAY 20
QD + F+ ++ + +HT +LFK+VLL LC + Y
Sbjct: 781 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIY 819
>At3g13080.3 68416.m01637 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1120
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 133 QDIFVNEFNTRYNCL-SHTRKYLFKKVLLNSLCEMFIAY 20
QD + F+ ++ + +HT +LFK+VLL LC + Y
Sbjct: 781 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIY 819
>At3g13080.2 68416.m01636 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1489
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 133 QDIFVNEFNTRYNCL-SHTRKYLFKKVLLNSLCEMFIAY 20
QD + F+ ++ + +HT +LFK+VLL LC + Y
Sbjct: 781 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIY 819
>At3g13080.1 68416.m01635 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1514
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 133 QDIFVNEFNTRYNCL-SHTRKYLFKKVLLNSLCEMFIAY 20
QD + F+ ++ + +HT +LFK+VLL LC + Y
Sbjct: 781 QDADIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIY 819
>At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 620
Score = 28.3 bits (60), Expect = 3.3
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +1
Query: 145 IKFYVFSFEMLTKMWLVSQPNSVILEIKVDPNAIGQECLEKVC---EKLEIGAEADYFGL 315
I+ Y ++L + L+ + I E+ + PNA+ L K C + +E+G E +
Sbjct: 384 IEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILI 443
Query: 316 RVCPGSGPGRWLNLRN 363
+ P G GR+++ N
Sbjct: 444 AIDPYHG-GRYVHKAN 458
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 361 NPLDPHRIPGGRLDLRVKFW-VPPHLLINEPTRHQ 462
NP+D + G LD +V+ W +P H +++ H+
Sbjct: 517 NPVDDNYFISGSLDAKVRIWSIPDHQVVDWNDLHE 551
>At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 381
Score = 27.9 bits (59), Expect = 4.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 328 GSGPGRWLNLRNPLDP 375
G GPG WLN+R +P
Sbjct: 73 GGGPGNWLNVRQTTEP 88
>At5g37350.1 68418.m04486 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 531
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 365 GFRKLSHLPGPDPGHTRRPK*SASAPISNFSHTFSRH 255
GF + P GH RP SA PISN + + H
Sbjct: 58 GFSLHARRPNAHGGHGSRPNSSALQPISNKAQKLTSH 94
>At4g34890.1 68417.m04948 xanthine dehydrogenase, putative similar
to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
[SP|P47990]; contains Pfam profile PF02738 Aldehyde
oxidase and xanthine dehydrogenase, molybdopterin
binding domain
Length = 1361
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 341 EDGLTCGTPSIRTAYPEDG*TSASSSGCPLTCSSTNRRGISS 466
+D L CG S+ +DG T S+G P +C S ++S
Sbjct: 178 DDALYCGVSSLSL---QDGSTICPSTGKPCSCGSKTTNEVAS 216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,542,043
Number of Sequences: 28952
Number of extensions: 248696
Number of successful extensions: 662
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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